Wall clock time and date at job start Tue Mar 31 2020 01:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86804 * 119.99870 * 2 1 4 4 H 1.48505 * 109.47113 * 83.17278 * 3 2 1 5 5 H 1.48494 * 109.47236 * 203.17304 * 3 2 1 6 6 H 1.48496 * 109.47166 * 323.17557 * 3 2 1 7 7 C 1.40338 * 120.00507 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99520 * 17.55376 * 7 2 1 9 9 C 1.40499 * 120.00283 * 197.54854 * 7 2 1 10 10 C 1.39673 * 123.36532 * 24.92065 * 9 7 2 11 11 C 1.32866 * 115.28173 * 179.76112 * 10 9 7 12 12 S 1.75652 * 110.86477 * 0.49123 * 11 10 9 13 13 C 1.39699 * 123.36168 * 205.21645 * 9 7 2 14 14 C 1.41752 * 125.45495 * 359.97438 * 13 9 7 15 15 O 1.21686 * 120.00448 * 0.02562 * 14 13 9 16 16 O 1.35007 * 119.99985 * 180.02562 * 14 13 9 17 17 C 1.42900 * 117.00049 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47320 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.47488 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47488 * 179.97438 * 19 18 17 21 21 C 1.52991 * 117.50115 * 243.74645 * 20 19 18 22 22 C 1.52994 * 117.49944 * 175.08544 * 20 19 18 23 23 H 0.97000 * 119.99917 * 173.08296 * 1 2 3 24 24 H 1.08001 * 122.35651 * 359.97438 * 10 9 7 25 25 H 1.07999 * 124.57231 * 180.21341 * 11 10 9 26 26 H 1.08994 * 109.47213 * 300.00006 * 17 16 14 27 27 H 1.09005 * 109.47023 * 59.99610 * 17 16 14 28 28 H 1.09003 * 109.47142 * 300.00104 * 18 17 16 29 29 H 1.09005 * 109.47109 * 60.00008 * 18 17 16 30 30 H 1.09003 * 109.46849 * 300.00081 * 19 18 17 31 31 H 1.08997 * 109.47289 * 59.99472 * 19 18 17 32 32 H 1.09001 * 115.54327 * 29.41473 * 20 19 18 33 33 H 1.09000 * 117.49619 * 359.97438 * 21 20 19 34 34 H 1.09001 * 117.50472 * 145.01762 * 21 20 19 35 35 H 1.09005 * 117.49632 * 214.98216 * 22 20 19 36 36 H 1.09001 * 117.50012 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3435 2.1297 1.3902 5 1 3.6023 1.4030 -0.5509 6 1 1.5171 2.6068 -0.8391 7 6 2.0080 -1.2153 0.0005 8 1 1.5057 -2.1290 -0.2812 9 6 3.3640 -1.2434 0.3674 10 6 3.9556 -0.2870 1.1957 11 6 5.2480 -0.4717 1.4427 12 16 5.8449 -1.9016 0.6154 13 6 4.2565 -2.2274 -0.0647 14 6 3.9332 -3.3147 -0.9147 15 8 2.7969 -3.4456 -1.3299 16 8 4.8861 -4.2052 -1.2638 17 6 4.4897 -5.2763 -2.1226 18 6 5.6948 -6.1751 -2.4065 19 6 5.2707 -7.3216 -3.3265 20 6 6.4760 -8.2200 -3.6109 21 6 6.9648 -8.3093 -5.0579 22 6 6.2318 -9.4935 -4.4229 23 1 -0.4850 -0.8339 -0.1012 24 1 3.4008 0.5422 1.6092 25 1 5.8514 0.1731 2.0644 26 1 3.7069 -5.8598 -1.6381 27 1 4.1116 -4.8691 -3.0604 28 1 6.4774 -5.5913 -2.8912 29 1 6.0733 -6.5823 -1.4688 30 1 4.4880 -7.9055 -2.8422 31 1 4.8924 -6.9141 -4.2641 32 1 7.2273 -8.2622 -2.8223 33 1 6.4275 -7.7282 -5.8073 34 1 8.0377 -8.4105 -5.2214 35 1 6.8228 -10.3735 -4.1688 36 1 5.2124 -9.6915 -4.7542 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870044069.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:10 Heat of formation + Delta-G solvation = -77.039342 kcal Electronic energy + Delta-G solvation = -18739.393259 eV Core-core repulsion = 15700.323876 eV Total energy + Delta-G solvation = -3039.069382 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13923 -38.99720 -38.57199 -37.07685 -35.42196 -34.14617 -31.16835 -29.22571 -27.53387 -24.18377 -23.29458 -23.04676 -22.51807 -21.38572 -21.12972 -19.58882 -18.70164 -17.58835 -17.35046 -16.70448 -16.44006 -15.95435 -15.65121 -15.39902 -15.13548 -14.91514 -14.12540 -13.97637 -13.72903 -13.47475 -13.35164 -12.97209 -12.67973 -12.62845 -12.44083 -12.23288 -12.02549 -12.00726 -11.74807 -11.44721 -11.37521 -11.15450 -11.11529 -10.85794 -10.77167 -9.83440 -9.50234 -9.22863 -6.78199 -0.13298 1.16611 1.26522 1.47469 1.54810 1.64383 1.78720 2.05666 2.13085 2.23944 2.90538 3.03711 3.66193 3.85639 3.95084 4.07375 4.09818 4.26276 4.27215 4.39264 4.48564 4.55980 4.69293 4.77811 4.79619 4.93542 5.04774 5.06496 5.10605 5.16607 5.17315 5.26594 5.33004 5.37515 5.45238 5.72275 6.00740 6.22313 6.52355 7.30254 7.62219 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.003749 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.210047 B = 7467.632008 C = 8200.388886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.006 3.994 3 Si 1.099 2.901 4 H -0.229 1.229 5 H -0.253 1.253 6 H -0.273 1.273 7 C -0.451 4.451 8 H 0.063 0.937 9 C 0.107 3.893 10 C -0.201 4.201 11 C -0.138 4.138 12 S 0.060 5.940 13 C -0.457 4.457 14 C 0.522 3.478 15 O -0.586 6.586 16 O -0.368 6.368 17 C 0.065 3.935 18 C -0.099 4.099 19 C -0.081 4.081 20 C -0.160 4.160 21 C -0.182 4.182 22 C -0.178 4.178 23 H 0.286 0.714 24 H 0.146 0.854 25 H 0.205 0.795 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.649 -6.550 -2.711 14.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.213 4.213 3 Si 0.915 3.085 4 H -0.153 1.153 5 H -0.177 1.177 6 H -0.199 1.199 7 C -0.482 4.482 8 H 0.081 0.919 9 C 0.096 3.904 10 C -0.234 4.234 11 C -0.273 4.273 12 S 0.318 5.682 13 C -0.572 4.572 14 C 0.380 3.620 15 O -0.485 6.485 16 O -0.287 6.287 17 C -0.010 4.010 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.179 4.179 21 C -0.219 4.219 22 C -0.215 4.215 23 H 0.097 0.903 24 H 0.163 0.837 25 H 0.222 0.778 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.436 -5.808 -2.858 14.914 hybrid contribution -2.261 -1.645 -0.293 2.811 sum 11.174 -7.453 -3.151 13.797 Atomic orbital electron populations 1.70473 1.08721 1.33708 1.27940 1.29108 0.95785 1.07437 0.89012 0.83445 0.75337 0.69011 0.80729 1.15292 1.17667 1.19919 1.21078 0.95416 0.97191 1.34507 0.91877 1.17279 0.92591 0.90622 0.89923 1.20326 0.96384 1.02546 1.04104 1.25910 0.97965 1.00877 1.02589 1.83043 1.10184 1.24564 1.50414 1.21437 0.98939 1.11206 1.25639 1.18571 0.82331 0.81583 0.79564 1.90706 1.23128 1.76466 1.58209 1.86138 1.41670 1.37260 1.63639 1.22655 0.99040 0.86835 0.92437 1.21465 0.95664 0.95493 1.01025 1.21029 0.97044 0.94699 0.99102 1.22263 1.00162 0.99841 0.95584 1.23138 1.01196 1.02288 0.95260 1.23063 1.02098 0.92416 1.03905 0.90274 0.83703 0.77804 0.93381 0.93388 0.90581 0.90450 0.91261 0.91606 0.87209 0.88901 0.87885 0.87685 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.43 13.64 21.89 0.30 -41.13 16 2 C 0.01 0.33 5.48 85.38 0.47 0.79 16 3 Si 1.10 42.80 24.91 68.60 1.71 44.51 16 4 H -0.23 -7.45 6.81 99.48 0.68 -6.77 16 5 H -0.25 -9.73 6.57 99.48 0.65 -9.07 16 6 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.45 -25.66 8.79 23.33 0.21 -25.46 16 8 H 0.06 4.10 6.24 -2.91 -0.02 4.08 16 9 C 0.11 5.55 5.16 -22.03 -0.11 5.43 16 10 C -0.20 -8.43 7.24 21.44 0.16 -8.27 16 11 C -0.14 -4.84 11.11 66.64 0.74 -4.10 16 12 S 0.06 2.38 23.02 -56.49 -1.30 1.08 16 13 C -0.46 -23.58 6.36 23.49 0.15 -23.43 16 14 C 0.52 28.06 7.73 68.69 0.53 28.59 16 15 O -0.59 -35.11 14.10 19.23 0.27 -34.84 16 16 O -0.37 -16.75 9.87 -59.25 -0.58 -17.33 16 17 C 0.07 2.41 5.38 71.98 0.39 2.80 16 18 C -0.10 -2.65 5.54 30.59 0.17 -2.48 16 19 C -0.08 -1.76 5.50 30.59 0.17 -1.60 16 20 C -0.16 -2.91 5.73 -10.80 -0.06 -2.97 16 21 C -0.18 -2.92 10.18 30.61 0.31 -2.61 16 22 C -0.18 -2.75 10.25 30.61 0.31 -2.43 16 23 H 0.29 15.27 8.73 -92.71 -0.81 14.46 16 24 H 0.15 5.44 4.51 -2.91 -0.01 5.43 16 25 H 0.21 4.84 8.06 -2.91 -0.02 4.82 16 26 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 27 H 0.05 1.83 8.13 -2.38 -0.02 1.81 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.43 7.87 -2.39 -0.02 1.41 16 32 H 0.11 1.90 8.08 -2.39 -0.02 1.88 16 33 H 0.09 1.51 8.03 -2.39 -0.02 1.49 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -66.87 317.10 4.78 -62.10 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.96 Total: 21.34 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 3.42 Total: -35.73 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.30 Total: -41.13 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.31 Total: -52.17 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.71 Total: 44.51 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.30 Total: 1.08 kcal Total: -66.87 4.78 -62.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044069.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.942 kcal (2) G-P(sol) polarization free energy of solvation -66.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds