Wall clock time and date at job start Tue Mar 31 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47363 * 2 1 4 4 C 1.30997 * 120.00334 * 124.99618 * 3 2 1 5 5 C 1.50699 * 120.00334 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47284 * 125.00417 * 5 4 3 7 7 O 1.42900 * 109.47320 * 180.02562 * 6 5 4 8 8 C 1.35007 * 117.00049 * 179.97438 * 7 6 5 9 9 O 1.21686 * 119.99567 * 0.02562 * 8 7 6 10 10 C 1.41752 * 119.99985 * 179.97438 * 8 7 6 11 11 S 1.75830 * 125.45698 * 359.97438 * 10 8 7 12 12 C 1.75652 * 91.49081 * 180.02562 * 11 10 8 13 13 C 1.32866 * 110.86477 * 359.72515 * 12 11 10 14 14 C 1.39673 * 115.28173 * 0.49123 * 13 12 11 15 15 C 1.40499 * 123.36532 * 179.76112 * 14 13 12 16 16 H 1.08006 * 120.00196 * 204.91543 * 15 14 13 17 17 C 1.40338 * 120.00283 * 24.92065 * 15 14 13 18 18 N 1.30620 * 120.00507 * 197.54854 * 17 15 14 19 19 Si 1.86804 * 119.99622 * 17.54650 * 17 15 14 20 20 H 1.48505 * 109.47113 * 263.17482 * 19 17 15 21 21 H 1.48494 * 109.47236 * 23.17509 * 19 17 15 22 22 H 1.48496 * 109.47166 * 143.17761 * 19 17 15 23 23 H 1.08994 * 109.47273 * 60.00000 * 1 2 3 24 24 H 1.08998 * 109.47029 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46953 * 300.00257 * 1 2 3 26 26 H 1.09000 * 109.47200 * 240.00077 * 2 1 3 27 27 H 1.09002 * 109.47573 * 120.00061 * 2 1 3 28 28 H 1.08006 * 120.00076 * 305.00736 * 3 2 1 29 29 H 1.08004 * 120.00081 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.46868 * 5.00450 * 5 4 3 31 31 H 1.09005 * 109.47289 * 245.00603 * 5 4 3 32 32 H 1.08994 * 109.47265 * 59.99983 * 6 5 4 33 33 H 1.09005 * 109.47109 * 300.00296 * 6 5 4 34 34 H 1.07999 * 124.56229 * 180.02562 * 12 11 10 35 35 H 1.08001 * 122.36131 * 180.25381 * 13 12 11 36 36 H 0.97000 * 119.99917 * 353.08091 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8641 1.8215 0.9293 5 6 3.3661 3.2424 0.9296 6 6 3.0710 3.8873 2.2854 7 8 3.5464 5.2348 2.2855 8 6 3.3622 5.9497 3.4159 9 8 2.8129 5.4405 4.3749 10 6 3.8097 7.2929 3.4859 11 16 4.6190 8.1671 2.1926 12 6 4.7457 9.6105 3.1855 13 6 4.2054 9.4103 4.3827 14 6 3.6790 8.1339 4.5937 15 6 3.0732 7.7372 5.7977 16 1 3.0478 6.6925 6.0709 17 6 2.5010 8.6982 6.6453 18 7 2.2499 8.4025 7.8926 19 14 2.0984 10.4005 5.9898 20 1 3.2034 11.3342 6.3254 21 1 1.9346 10.3371 4.5152 22 1 0.8374 10.8834 6.6076 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7065 2.1088 -0.7661 29 1 3.1902 1.1334 1.6953 30 1 2.8641 3.8052 0.1426 31 1 4.4414 3.2480 0.7510 32 1 3.5729 3.3245 3.0724 33 1 1.9957 3.8817 2.4640 34 1 5.1974 10.5374 2.8642 35 1 4.1786 10.1791 5.1407 36 1 2.3643 7.4922 8.2077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:55 Heat of formation + Delta-G solvation = -72.751846 kcal Electronic energy + Delta-G solvation = -18627.176203 eV Core-core repulsion = 15588.292741 eV Total energy + Delta-G solvation = -3038.883463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.24076 -37.16958 -36.41670 -35.05054 -33.55621 -32.70401 -29.47706 -28.63429 -26.82211 -23.97638 -22.27662 -21.56957 -20.90271 -19.71511 -19.25459 -17.77902 -16.81319 -15.83019 -15.57296 -15.01732 -14.87490 -14.61724 -14.08609 -13.66330 -13.54715 -13.37057 -13.20250 -12.39743 -12.26999 -12.16008 -11.97387 -11.78862 -11.43674 -11.30734 -11.18846 -11.01135 -10.92530 -10.86290 -10.21769 -10.04413 -9.70012 -9.65449 -9.40780 -9.07364 -8.84342 -7.92591 -7.66543 -7.40038 -4.79842 1.67271 2.13005 2.83965 2.91096 3.12994 3.28168 3.43605 3.47637 3.73425 3.87416 4.16875 4.71488 4.88145 4.97799 5.09872 5.17443 5.32886 5.36039 5.43880 5.69291 5.71467 5.74123 5.75736 5.88312 6.00902 6.08867 6.11897 6.19029 6.61737 6.73868 6.77656 6.78497 7.13405 7.15637 7.29798 7.66893 7.93042 8.27307 8.44870 9.28018 9.57793 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.022844 B = 0.003831 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.426978 B = 7306.441794 C = 8121.691723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.161 4.161 4 C -0.149 4.149 5 C -0.089 4.089 6 C 0.078 3.922 7 O -0.371 6.371 8 C 0.532 3.468 9 O -0.548 6.548 10 C -0.415 4.415 11 S 0.016 5.984 12 C -0.174 4.174 13 C -0.168 4.168 14 C 0.111 3.889 15 C -0.410 4.410 16 H 0.111 0.889 17 C 0.033 3.967 18 N -0.769 5.769 19 Si 1.066 2.934 20 H -0.270 1.270 21 H -0.254 1.254 22 H -0.280 1.280 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.148 0.852 35 H 0.125 0.875 36 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 -5.975 -10.656 12.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.179 4.179 4 C -0.168 4.168 5 C -0.126 4.126 6 C 0.003 3.997 7 O -0.291 6.291 8 C 0.388 3.612 9 O -0.445 6.445 10 C -0.531 4.531 11 S 0.274 5.726 12 C -0.309 4.309 13 C -0.201 4.201 14 C 0.101 3.899 15 C -0.440 4.440 16 H 0.129 0.871 17 C -0.192 4.192 18 N -0.390 5.390 19 Si 0.890 3.110 20 H -0.196 1.196 21 H -0.178 1.178 22 H -0.206 1.206 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.155 -5.126 -11.326 12.432 hybrid contribution 0.189 -1.369 1.237 1.855 sum 0.034 -6.495 -10.088 11.998 Atomic orbital electron populations 1.21720 0.95195 1.01494 1.02220 1.20629 0.96154 0.94325 1.02122 1.22881 0.98259 0.97318 0.99447 1.22726 0.98536 0.96480 0.99008 1.20622 1.02243 0.92602 0.97161 1.22186 0.99145 0.81534 0.96825 1.86156 1.76561 1.24936 1.41430 1.18196 0.77904 0.85483 0.79596 1.90730 1.45078 1.71379 1.37285 1.20854 1.35026 0.98099 0.99102 1.83285 1.65485 1.04645 1.19142 1.25268 1.05611 1.01934 0.98075 1.20281 1.03933 0.98300 0.97623 1.16888 0.91857 0.89410 0.91765 1.21229 1.24155 0.98932 0.99690 0.87109 1.27800 0.91993 1.06974 0.92480 1.70397 1.30769 1.24010 1.13826 0.83756 0.77496 0.71900 0.77834 1.19641 1.17818 1.20618 0.92627 0.92713 0.92455 0.91320 0.91667 0.87264 0.87219 0.90739 0.90194 0.92570 0.92497 0.83410 0.85725 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.10 -0.85 6.38 -27.88 -0.18 -1.03 16 3 C -0.16 -1.73 9.12 -36.03 -0.33 -2.05 16 4 C -0.15 -1.79 9.12 -36.03 -0.33 -2.12 16 5 C -0.09 -1.25 6.03 -27.88 -0.17 -1.42 16 6 C 0.08 1.43 5.36 37.16 0.20 1.63 16 7 O -0.37 -8.30 9.87 -41.34 -0.41 -8.71 16 8 C 0.53 13.80 7.73 32.07 0.25 14.05 16 9 O -0.55 -15.43 14.10 -19.41 -0.27 -15.71 16 10 C -0.41 -10.63 6.36 -37.69 -0.24 -10.87 16 11 S 0.02 0.35 23.02 -107.50 -2.47 -2.13 16 12 C -0.17 -3.45 11.11 28.88 0.32 -3.13 16 13 C -0.17 -3.74 7.24 -40.90 -0.30 -4.04 16 14 C 0.11 2.87 5.16 -107.96 -0.56 2.31 16 15 C -0.41 -11.09 8.79 -37.94 -0.33 -11.42 16 16 H 0.11 3.29 6.24 -52.48 -0.33 2.97 16 17 C 0.03 0.82 5.48 -17.28 -0.09 0.73 16 18 N -0.77 -19.44 13.64 55.57 0.76 -18.68 16 19 Si 1.07 22.03 24.91 -169.99 -4.23 17.80 16 20 H -0.27 -5.07 6.81 56.52 0.38 -4.69 16 21 H -0.25 -5.25 6.57 56.52 0.37 -4.88 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 28 H 0.11 1.13 7.84 -52.48 -0.41 0.72 16 29 H 0.11 1.23 7.84 -52.48 -0.41 0.82 16 30 H 0.07 1.02 7.79 -51.93 -0.40 0.61 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 33 H 0.06 1.07 8.13 -51.93 -0.42 0.64 16 34 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.13 2.57 4.52 -52.49 -0.24 2.33 16 36 H 0.30 7.40 8.73 -40.82 -0.36 7.05 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -28.98 319.57 -7.98 -36.96 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.78 Total: 3.90 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -1.39 Total: -18.26 kcal Atomic # 7 Polarization: -19.44 SS G_CDS: 0.76 Total: -18.68 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.68 Total: -24.41 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.23 Total: 17.80 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.47 Total: -2.13 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.98 -7.98 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.793 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds