Wall clock time and date at job start Tue Mar 31 2020 01:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50704 * 119.99904 * 2 1 4 4 C 1.31006 * 120.00093 * 179.97438 * 2 1 3 5 5 C 1.50694 * 119.99957 * 353.38858 * 4 2 1 6 6 C 1.53001 * 109.46970 * 122.06352 * 5 4 2 7 7 O 1.42904 * 109.46892 * 180.02562 * 6 5 4 8 8 C 1.35003 * 116.99785 * 180.02562 * 7 6 5 9 9 O 1.21692 * 120.00021 * 359.97438 * 8 7 6 10 10 C 1.41752 * 120.00265 * 180.02562 * 8 7 6 11 11 S 1.75833 * 125.45447 * 0.13717 * 10 8 7 12 12 C 1.75647 * 91.49371 * 180.18473 * 11 10 8 13 13 C 1.32877 * 110.86630 * 359.82481 * 12 11 10 14 14 C 1.39678 * 115.27661 * 359.97438 * 13 12 11 15 15 C 1.40508 * 123.36207 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99513 * 159.21092 * 15 14 13 17 17 C 1.40333 * 120.00024 * 339.21426 * 15 14 13 18 18 N 1.30624 * 119.99984 * 330.27270 * 17 15 14 19 19 Si 1.86800 * 120.00221 * 150.27494 * 17 15 14 20 20 H 1.48496 * 109.47276 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.46877 * 299.99941 * 19 17 15 22 22 H 1.48505 * 109.46873 * 59.99497 * 19 17 15 23 23 H 1.08998 * 109.47551 * 265.22249 * 1 2 3 24 24 H 1.08999 * 109.47068 * 25.22521 * 1 2 3 25 25 H 1.09000 * 109.46912 * 145.22604 * 1 2 3 26 26 H 1.08997 * 109.47065 * 269.99217 * 3 2 1 27 27 H 1.09001 * 109.47079 * 29.99964 * 3 2 1 28 28 H 1.09004 * 109.46793 * 149.99622 * 3 2 1 29 29 H 1.08000 * 119.99461 * 173.38622 * 4 2 1 30 30 H 1.09006 * 109.47352 * 2.06525 * 5 4 2 31 31 H 1.08999 * 109.47336 * 242.06626 * 5 4 2 32 32 H 1.08990 * 109.47272 * 60.00098 * 6 5 4 33 33 H 1.09002 * 109.46841 * 299.99704 * 6 5 4 34 34 H 1.07999 * 124.57177 * 179.84013 * 12 11 10 35 35 H 1.07994 * 122.36203 * 180.02562 * 13 12 11 36 36 H 0.97002 * 119.99828 * 351.92852 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4161 -2.4352 0.1513 6 6 1.7027 -3.3304 -1.0558 7 8 0.9949 -4.5636 -0.9131 8 6 1.1414 -5.4722 -1.9007 9 8 1.8512 -5.2223 -2.8571 10 6 0.4676 -6.7170 -1.8243 11 16 -0.5926 -7.2244 -0.5165 12 6 -0.8865 -8.7719 -1.2936 13 6 -0.2253 -8.8576 -2.4430 14 6 0.5369 -7.7359 -2.7776 15 6 1.3024 -7.6443 -3.9522 16 1 1.5935 -6.6764 -4.3328 17 6 1.6886 -8.8104 -4.6309 18 7 1.8767 -9.9199 -3.9678 19 14 1.9336 -8.7758 -6.4824 20 1 2.3379 -10.1247 -6.9535 21 1 0.6634 -8.3806 -7.1424 22 1 2.9947 -7.7943 -6.8230 23 1 -0.3634 -0.0856 1.0240 24 1 -0.3633 0.9297 -0.4380 25 1 -0.3633 -0.8441 -0.5861 26 1 2.4423 1.6197 -1.0276 27 1 1.6714 2.0648 0.5138 28 1 3.2129 1.1748 0.5139 29 1 3.2366 -1.1376 -0.1072 30 1 0.3460 -2.2357 0.2098 31 1 1.7423 -2.9376 1.0620 32 1 2.7726 -3.5299 -1.1143 33 1 1.3764 -2.8279 -1.9664 34 1 -1.5196 -9.5491 -0.8916 35 1 -0.2743 -9.7324 -3.0743 36 1 1.8649 -9.9133 -2.9979 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:31 Heat of formation + Delta-G solvation = -74.913065 kcal Electronic energy + Delta-G solvation = -18819.602219 eV Core-core repulsion = 15780.625039 eV Total energy + Delta-G solvation = -3038.977180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.17432 -37.33666 -36.81468 -34.98389 -33.30735 -31.55045 -29.20546 -27.92107 -26.92959 -25.71025 -23.00907 -21.95237 -20.58499 -19.21640 -18.10119 -17.42299 -16.68063 -15.91567 -15.51114 -14.77346 -14.55508 -14.21281 -14.11340 -14.00771 -13.61608 -13.22592 -12.87695 -12.51888 -12.19684 -12.08068 -11.97292 -11.74253 -11.53709 -11.31809 -11.24788 -11.04736 -10.79254 -10.65647 -10.53043 -10.26956 -9.81069 -9.60110 -9.24242 -8.84479 -8.68779 -7.87361 -7.50797 -7.47240 -4.75318 1.84145 2.09287 2.95493 2.98861 3.02052 3.23863 3.54264 3.59865 3.79201 3.95382 4.18102 4.81756 4.89376 4.95788 5.22879 5.32626 5.39731 5.45210 5.54476 5.67639 5.75843 5.80436 5.84707 5.85274 5.94750 6.18058 6.19184 6.48130 6.65171 6.82743 6.88101 6.92572 7.09734 7.26762 7.54036 7.71879 7.86929 8.27352 8.51620 9.36296 9.51775 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.004116 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.965711 B = 6801.556855 C = 7863.853919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.136 4.136 3 C -0.115 4.115 4 C -0.157 4.157 5 C -0.094 4.094 6 C 0.079 3.921 7 O -0.372 6.372 8 C 0.531 3.469 9 O -0.555 6.555 10 C -0.425 4.425 11 S -0.002 6.002 12 C -0.184 4.184 13 C -0.148 4.148 14 C 0.108 3.892 15 C -0.409 4.409 16 H 0.116 0.884 17 C 0.031 3.969 18 N -0.750 5.750 19 Si 1.071 2.929 20 H -0.269 1.269 21 H -0.268 1.268 22 H -0.267 1.267 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 9.777 4.322 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.136 4.136 3 C -0.172 4.172 4 C -0.175 4.175 5 C -0.131 4.131 6 C 0.004 3.996 7 O -0.291 6.291 8 C 0.388 3.612 9 O -0.452 6.452 10 C -0.541 4.541 11 S 0.255 5.745 12 C -0.319 4.319 13 C -0.182 4.182 14 C 0.098 3.902 15 C -0.438 4.438 16 H 0.134 0.866 17 C -0.197 4.197 18 N -0.371 5.371 19 Si 0.891 3.109 20 H -0.194 1.194 21 H -0.193 1.193 22 H -0.191 1.191 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.386 9.539 4.175 10.504 hybrid contribution 0.222 0.277 0.158 0.389 sum -1.164 9.816 4.334 10.793 Atomic orbital electron populations 1.20908 0.92380 1.02477 1.02125 1.21619 0.95911 0.94932 1.01119 1.20809 0.99530 0.94908 1.01940 1.22502 0.99577 0.93252 1.02211 1.20727 1.01190 0.92900 0.98240 1.22180 0.96290 0.83475 0.97703 1.86165 1.67607 1.26195 1.49181 1.18187 0.80339 0.82931 0.79734 1.90694 1.41692 1.78863 1.33972 1.20731 1.26110 1.02360 1.04882 1.83238 1.52728 1.10581 1.27983 1.25241 1.05392 1.01236 1.00048 1.20422 1.00074 1.00081 0.97589 1.16817 0.92657 0.89426 0.91250 1.21275 1.21487 0.98365 1.02695 0.86589 1.27724 0.91566 0.90898 1.09463 1.70402 1.23763 1.29369 1.13581 0.83558 0.78792 0.77738 0.70786 1.19361 1.19293 1.19136 0.91566 0.92118 0.91095 0.91653 0.91956 0.91992 0.87177 0.90183 0.90194 0.92667 0.92698 0.83946 0.85401 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.00 36.00 0.32 -0.95 16 2 C -0.14 -1.52 6.05 -101.07 -0.61 -2.13 16 3 C -0.12 -1.03 10.00 36.01 0.36 -0.67 16 4 C -0.16 -1.98 9.10 -36.03 -0.33 -2.30 16 5 C -0.09 -1.37 5.74 -27.89 -0.16 -1.53 16 6 C 0.08 1.48 5.36 37.16 0.20 1.68 16 7 O -0.37 -8.55 9.87 -41.33 -0.41 -8.95 16 8 C 0.53 14.04 7.73 32.07 0.25 14.29 16 9 O -0.55 -15.66 14.04 -19.41 -0.27 -15.93 16 10 C -0.43 -11.23 6.36 -37.69 -0.24 -11.47 16 11 S 0.00 -0.05 23.02 -107.50 -2.47 -2.52 16 12 C -0.18 -3.91 11.11 28.88 0.32 -3.59 16 13 C -0.15 -3.49 8.20 -40.89 -0.34 -3.82 16 14 C 0.11 2.86 5.29 -107.96 -0.57 2.29 16 15 C -0.41 -10.83 8.38 -37.94 -0.32 -11.15 16 16 H 0.12 3.26 6.01 -52.48 -0.32 2.95 16 17 C 0.03 0.73 5.02 -17.28 -0.09 0.65 16 18 N -0.75 -18.11 12.33 55.57 0.68 -17.42 16 19 Si 1.07 20.25 30.03 -169.99 -5.10 15.15 16 20 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 21 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.07 0.82 6.54 -51.93 -0.34 0.48 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 29 H 0.11 1.30 8.05 -52.49 -0.42 0.87 16 30 H 0.08 1.13 5.56 -51.93 -0.29 0.84 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.05 8.13 -51.93 -0.42 0.62 16 33 H 0.05 1.05 8.13 -51.93 -0.42 0.62 16 34 H 0.14 2.49 8.06 -52.49 -0.42 2.07 16 35 H 0.13 2.92 6.80 -52.49 -0.36 2.56 16 36 H 0.30 7.52 7.03 -40.82 -0.29 7.23 16 LS Contribution 320.97 15.07 4.84 4.84 Total: -1.00 -28.96 320.97 -8.54 -37.49 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.60 Total: 6.06 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -1.20 Total: -18.71 kcal Atomic # 7 Polarization: -18.11 SS G_CDS: 0.68 Total: -17.42 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.68 Total: -24.88 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.10 Total: 15.15 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.47 Total: -2.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.96 -8.54 -37.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.420 kcal (2) G-P(sol) polarization free energy of solvation -28.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds