Wall clock time and date at job start Tue Mar 31 2020 01:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21270 * 119.99955 * 2 1 4 4 C 1.46990 * 119.99920 * 180.02562 * 2 1 3 5 5 C 1.39919 * 120.16806 * 359.97438 * 4 2 1 6 6 C 1.38248 * 119.78792 * 180.02562 * 5 4 2 7 7 O 1.35966 * 119.93118 * 179.97438 * 6 5 4 8 8 C 1.34258 * 116.99978 * 77.11778 * 7 6 5 9 9 O 1.20828 * 120.00000 * 355.10297 * 8 7 6 10 10 C 1.50702 * 120.00017 * 175.09628 * 8 7 6 11 11 H 1.09003 * 109.46813 * 60.00333 * 10 8 7 12 12 C 1.52998 * 109.47164 * 300.00285 * 10 8 7 13 13 C 1.50704 * 109.46965 * 180.02562 * 10 8 7 14 14 H 1.07997 * 119.99805 * 359.97438 * 13 10 8 15 15 C 1.37878 * 119.99572 * 180.02562 * 13 10 8 16 16 N 1.31509 * 120.00412 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99496 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.47005 * 269.99602 * 17 15 13 19 19 H 1.48496 * 109.47353 * 29.99552 * 17 15 13 20 20 H 1.48497 * 109.47007 * 149.99711 * 17 15 13 21 21 C 1.38968 * 120.14131 * 0.25924 * 6 5 4 22 22 C 1.38166 * 120.34473 * 359.48472 * 21 6 5 23 23 C 1.38273 * 120.20241 * 0.51290 * 22 21 6 24 24 F 1.35103 * 120.06842 * 179.72515 * 23 22 21 25 25 H 1.09004 * 109.47231 * 239.99551 * 1 2 3 26 26 H 1.09003 * 109.47411 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47551 * 119.99608 * 1 2 3 28 28 H 1.07997 * 120.10725 * 0.05213 * 5 4 2 29 29 H 1.08998 * 109.47690 * 299.99992 * 12 10 8 30 30 H 1.09005 * 109.47011 * 60.00113 * 12 10 8 31 31 H 1.08999 * 109.46942 * 179.97438 * 12 10 8 32 32 H 0.96996 * 120.00239 * 180.02562 * 16 15 13 33 33 H 1.08001 * 119.83352 * 179.74357 * 21 6 5 34 34 H 1.08004 * 119.89444 * 180.25906 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2419 -1.2730 -0.0006 5 6 1.5459 -2.4868 -0.0006 6 6 2.2450 -3.6794 -0.0006 7 8 1.5716 -4.8606 0.0000 8 6 1.0376 -5.2582 -1.1659 9 8 1.0899 -4.5349 -2.1323 10 6 0.3730 -6.6069 -1.2692 11 1 -0.4598 -6.6562 -0.5677 12 6 1.3874 -7.7023 -0.9345 13 6 -0.1388 -6.8085 -2.6723 14 1 0.0026 -6.0370 -3.4147 15 6 -0.7885 -7.9774 -3.0077 16 7 -0.9611 -8.9166 -2.1035 17 14 -1.4235 -8.2270 -4.7466 18 1 -2.8152 -7.7178 -4.8432 19 1 -0.5585 -7.4874 -5.7005 20 1 -1.4018 -9.6742 -5.0785 21 6 3.6347 -3.6736 0.0049 22 6 4.3278 -2.4784 -0.0004 23 6 3.6429 -1.2772 -0.0005 24 9 4.3234 -0.1100 0.0000 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5137 -0.8900 28 1 0.4659 -2.4919 -0.0010 29 1 2.2202 -7.6530 -1.6360 30 1 1.7579 -7.5566 0.0802 31 1 0.9066 -8.6776 -1.0088 32 1 -1.4179 -9.7391 -2.3396 33 1 4.1758 -4.6083 0.0090 34 1 5.4078 -2.4824 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873637943.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:59 Heat of formation + Delta-G solvation = -138.861077 kcal Electronic energy + Delta-G solvation = -21265.055121 eV Core-core repulsion = 17657.091771 eV Total energy + Delta-G solvation = -3607.963350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.01057 -40.92635 -39.58755 -38.02746 -36.15378 -34.05462 -32.38680 -30.92467 -29.64721 -29.55522 -25.34527 -24.39340 -24.20390 -22.29066 -20.72292 -19.67556 -17.89730 -17.46642 -17.19283 -16.31665 -16.25275 -15.84409 -15.62841 -15.08597 -14.85373 -14.68837 -14.54523 -14.28272 -13.60838 -13.43311 -12.88781 -12.69513 -12.43337 -12.34442 -12.10712 -11.89544 -11.69185 -11.17075 -10.97538 -10.85095 -10.75868 -10.46381 -10.17821 -9.88337 -9.53638 -9.38557 -9.20290 -8.65354 -8.54705 -6.22518 -4.29167 0.31748 0.87598 2.12548 2.93872 3.08019 3.23293 3.29854 3.36223 3.64712 3.76652 4.00772 4.31615 4.43144 4.74095 4.89903 4.94459 5.11053 5.18093 5.21037 5.25385 5.51570 5.67850 5.78742 5.87033 6.01605 6.09121 6.46435 6.52252 6.68902 6.74952 7.03893 7.26366 7.30359 7.60501 7.80858 7.98612 8.60281 8.79302 9.37506 10.84661 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.004130 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.309798 B = 6778.354498 C = 7290.681583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.397 3.603 3 O -0.449 6.449 4 C -0.197 4.197 5 C -0.051 4.051 6 C 0.078 3.922 7 O -0.303 6.303 8 C 0.463 3.537 9 O -0.495 6.495 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.136 4.136 13 C -0.517 4.517 14 H 0.076 0.924 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.906 3.094 18 H -0.278 1.278 19 H -0.272 1.272 20 H -0.285 1.285 21 C -0.063 4.063 22 C -0.154 4.154 23 C 0.147 3.853 24 F -0.119 7.119 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.148 0.852 29 H 0.033 0.967 30 H 0.025 0.975 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.148 0.852 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 9.772 6.827 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.275 3.725 3 O -0.325 6.325 4 C -0.199 4.199 5 C -0.070 4.070 6 C 0.036 3.964 7 O -0.220 6.220 8 C 0.308 3.692 9 O -0.379 6.379 10 C 0.043 3.957 11 H 0.086 0.914 12 C -0.194 4.194 13 C -0.555 4.555 14 H 0.094 0.906 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.733 3.267 18 H -0.204 1.204 19 H -0.196 1.196 20 H -0.210 1.210 21 C -0.081 4.081 22 C -0.172 4.172 23 C 0.127 3.873 24 F -0.097 7.097 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.165 0.835 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.165 0.835 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.742 10.439 6.522 13.583 hybrid contribution -0.229 -0.097 -0.914 0.947 sum 5.514 10.343 5.609 12.993 Atomic orbital electron populations 1.22256 0.92926 1.05377 1.05114 1.22318 0.92015 0.86852 0.71330 1.90586 1.72134 1.33823 1.35926 1.20445 0.92454 0.96034 1.10958 1.21550 1.01135 0.89953 0.94332 1.18544 0.90660 0.85547 1.01633 1.84886 1.64230 1.34306 1.38610 1.26037 0.74265 0.90457 0.78395 1.90554 1.54799 1.55167 1.37357 1.18847 0.94491 0.81928 1.00409 0.91378 1.21774 0.97762 1.02876 0.96968 1.21103 1.37013 1.03185 0.94206 0.90558 1.24922 0.95426 0.95440 0.98004 1.69861 1.41989 1.07323 1.33634 0.86358 0.79298 0.77282 0.83775 1.20431 1.19640 1.21037 1.21346 0.92784 0.98886 0.95102 1.20983 1.01286 0.90130 1.04847 1.17892 0.88937 0.81865 0.98597 1.91571 1.79347 1.45889 1.92863 0.88540 0.89413 0.88310 0.83481 0.94807 0.95588 0.88281 0.92513 0.83470 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 8.93 36.01 0.32 -1.56 16 2 C 0.40 5.25 7.22 -30.76 -0.22 5.03 16 3 O -0.45 -7.26 16.07 5.57 0.09 -7.17 16 4 C -0.20 -2.72 5.87 -105.02 -0.62 -3.34 16 5 C -0.05 -0.72 8.98 -38.95 -0.35 -1.07 16 6 C 0.08 1.22 5.13 -39.31 -0.20 1.02 16 7 O -0.30 -5.46 9.92 -23.73 -0.24 -5.69 16 8 C 0.46 9.89 7.12 36.01 0.26 10.15 16 9 O -0.50 -11.61 14.95 -18.75 -0.28 -11.89 16 10 C 0.06 1.45 2.74 -92.92 -0.25 1.20 16 11 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 12 C -0.14 -2.96 8.90 37.16 0.33 -2.63 16 13 C -0.52 -13.62 8.37 -34.44 -0.29 -13.91 16 14 H 0.08 2.10 6.76 -52.49 -0.35 1.75 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 16 N -0.89 -23.48 11.32 55.43 0.63 -22.85 16 17 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.06 -0.82 9.97 -39.34 -0.39 -1.21 16 22 C -0.15 -1.83 10.00 -39.59 -0.40 -2.23 16 23 C 0.15 2.04 7.29 -38.87 -0.28 1.75 16 24 F -0.12 -1.77 15.54 2.25 0.04 -1.73 16 25 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 27 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 28 H 0.15 1.84 7.05 -52.49 -0.37 1.47 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.48 8.11 -51.93 -0.42 0.06 16 31 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 32 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.15 1.33 8.06 -52.48 -0.42 0.90 16 LS Contribution 307.49 15.07 4.63 4.63 Total: -1.00 -29.78 307.49 -5.89 -35.67 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -3.55 Total: -1.24 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.19 Total: -5.22 kcal Atomic # 7 Polarization: -23.48 SS G_CDS: 0.63 Total: -22.85 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.43 Total: -24.75 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.78 -5.89 -35.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873637943.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.195 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds