Wall clock time and date at job start Tue Mar 31 2020 01:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21270 * 119.99955 * 2 1 4 4 C 1.46990 * 119.99920 * 180.02562 * 2 1 3 5 5 C 1.39919 * 120.16806 * 359.97438 * 4 2 1 6 6 C 1.38248 * 119.78792 * 180.02562 * 5 4 2 7 7 O 1.35966 * 119.93118 * 179.97438 * 6 5 4 8 8 C 1.34258 * 116.99978 * 77.11778 * 7 6 5 9 9 O 1.20828 * 120.00000 * 355.10297 * 8 7 6 10 10 C 1.50702 * 120.00017 * 175.09628 * 8 7 6 11 11 H 1.09003 * 109.46813 * 60.00333 * 10 8 7 12 12 C 1.52998 * 109.47164 * 300.00285 * 10 8 7 13 13 C 1.50704 * 109.46965 * 180.02562 * 10 8 7 14 14 H 1.07997 * 119.99805 * 359.97438 * 13 10 8 15 15 C 1.37878 * 119.99572 * 180.02562 * 13 10 8 16 16 N 1.31509 * 120.00412 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99496 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.47005 * 269.99602 * 17 15 13 19 19 H 1.48496 * 109.47353 * 29.99552 * 17 15 13 20 20 H 1.48497 * 109.47007 * 149.99711 * 17 15 13 21 21 C 1.38968 * 120.14131 * 0.25924 * 6 5 4 22 22 C 1.38166 * 120.34473 * 359.48472 * 21 6 5 23 23 C 1.38273 * 120.20241 * 0.51290 * 22 21 6 24 24 F 1.35103 * 120.06842 * 179.72515 * 23 22 21 25 25 H 1.09004 * 109.47231 * 239.99551 * 1 2 3 26 26 H 1.09003 * 109.47411 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47551 * 119.99608 * 1 2 3 28 28 H 1.07997 * 120.10725 * 0.05213 * 5 4 2 29 29 H 1.08998 * 109.47690 * 299.99992 * 12 10 8 30 30 H 1.09005 * 109.47011 * 60.00113 * 12 10 8 31 31 H 1.08999 * 109.46942 * 179.97438 * 12 10 8 32 32 H 0.96996 * 120.00239 * 180.02562 * 16 15 13 33 33 H 1.08001 * 119.83352 * 179.74357 * 21 6 5 34 34 H 1.08004 * 119.89444 * 180.25906 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2419 -1.2730 -0.0006 5 6 1.5459 -2.4868 -0.0006 6 6 2.2450 -3.6794 -0.0006 7 8 1.5716 -4.8606 0.0000 8 6 1.0376 -5.2582 -1.1659 9 8 1.0899 -4.5349 -2.1323 10 6 0.3730 -6.6069 -1.2692 11 1 -0.4598 -6.6562 -0.5677 12 6 1.3874 -7.7023 -0.9345 13 6 -0.1388 -6.8085 -2.6723 14 1 0.0026 -6.0370 -3.4147 15 6 -0.7885 -7.9774 -3.0077 16 7 -0.9611 -8.9166 -2.1035 17 14 -1.4235 -8.2270 -4.7466 18 1 -2.8152 -7.7178 -4.8432 19 1 -0.5585 -7.4874 -5.7005 20 1 -1.4018 -9.6742 -5.0785 21 6 3.6347 -3.6736 0.0049 22 6 4.3278 -2.4784 -0.0004 23 6 3.6429 -1.2772 -0.0005 24 9 4.3234 -0.1100 0.0000 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5137 -0.8900 28 1 0.4659 -2.4919 -0.0010 29 1 2.2202 -7.6530 -1.6360 30 1 1.7579 -7.5566 0.0802 31 1 0.9066 -8.6776 -1.0088 32 1 -1.4179 -9.7391 -2.3396 33 1 4.1758 -4.6083 0.0090 34 1 5.4078 -2.4824 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873637943.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:58 Heat of formation + Delta-G solvation = -153.903266 kcal Electronic energy + Delta-G solvation = -21265.707399 eV Core-core repulsion = 17657.091771 eV Total energy + Delta-G solvation = -3608.615628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.13862 -42.33770 -40.74410 -39.29747 -37.62547 -35.93917 -33.41001 -32.75750 -30.87093 -30.43548 -27.27394 -25.78004 -25.40267 -23.63345 -22.10321 -20.95841 -19.08394 -18.82179 -18.39431 -18.20284 -17.81484 -16.98204 -16.89290 -16.51669 -16.28706 -15.88492 -15.73348 -15.26309 -15.08459 -14.79723 -14.41669 -14.07726 -13.68793 -13.27252 -13.17833 -13.09001 -12.99369 -12.97591 -12.77413 -12.62017 -12.30581 -12.13348 -12.05948 -11.23304 -11.10753 -10.94239 -10.53433 -10.42524 -9.81921 -8.19567 -6.32542 -0.75518 -0.23257 1.07382 1.28038 1.44061 1.45896 1.55675 1.79872 2.40424 2.50504 2.78042 2.94400 3.11510 3.43384 3.66199 3.84364 4.00480 4.04113 4.39259 4.49586 4.55082 4.61987 4.71554 4.72440 4.78871 4.89794 4.94314 5.04336 5.11636 5.26913 5.43711 5.59702 5.71508 5.90957 6.11096 6.28992 6.73879 7.00303 7.36830 8.86422 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.004130 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.309798 B = 6778.354498 C = 7290.681583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.397 3.603 3 O -0.486 6.486 4 C -0.207 4.207 5 C -0.047 4.047 6 C 0.042 3.958 7 O -0.293 6.293 8 C 0.474 3.526 9 O -0.521 6.521 10 C 0.054 3.946 11 H 0.059 0.941 12 C -0.125 4.125 13 C -0.538 4.538 14 H 0.057 0.943 15 C 0.027 3.973 16 N -0.907 5.907 17 Si 0.959 3.041 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.276 1.276 21 C -0.056 4.056 22 C -0.140 4.140 23 C 0.135 3.865 24 F -0.126 7.126 25 H 0.119 0.881 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.159 0.841 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.268 0.732 33 H 0.169 0.831 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.889 9.768 7.079 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.277 3.723 3 O -0.364 6.364 4 C -0.209 4.209 5 C -0.066 4.066 6 C 0.000 4.000 7 O -0.209 6.209 8 C 0.320 3.680 9 O -0.407 6.407 10 C 0.035 3.965 11 H 0.077 0.923 12 C -0.182 4.182 13 C -0.576 4.576 14 H 0.076 0.924 15 C -0.174 4.174 16 N -0.545 5.545 17 Si 0.785 3.215 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.074 4.074 22 C -0.158 4.158 23 C 0.115 3.885 24 F -0.105 7.105 25 H 0.137 0.863 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.177 0.823 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.187 0.813 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.153 10.423 6.805 13.886 hybrid contribution -0.294 -0.036 -0.922 0.968 sum 5.859 10.387 5.883 13.298 Atomic orbital electron populations 1.22299 0.89920 1.06525 1.06449 1.22840 0.93643 0.86000 0.69816 1.90574 1.73129 1.34744 1.37911 1.20608 0.92781 0.96297 1.11227 1.21633 1.01834 0.89546 0.93538 1.18902 0.91782 0.84860 1.04437 1.84823 1.64059 1.35540 1.36501 1.25409 0.74047 0.89585 0.78930 1.90536 1.55916 1.55738 1.38529 1.18739 0.94949 0.83986 0.98790 0.92348 1.21611 0.96976 1.01056 0.98591 1.21232 1.37932 1.03055 0.95376 0.92444 1.25551 0.95502 0.95183 1.01127 1.69938 1.42128 1.07526 1.34877 0.85533 0.78709 0.77419 0.79881 1.19902 1.20167 1.20114 1.21605 0.91856 1.00275 0.93709 1.21284 1.02865 0.88733 1.02951 1.18256 0.89297 0.82273 0.98649 1.91554 1.79453 1.46507 1.92940 0.86294 0.88485 0.87530 0.82314 0.94959 0.92750 0.90367 0.92236 0.81303 0.80004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.34 8.93 71.24 0.64 -2.70 16 2 C 0.40 10.16 7.22 27.98 0.20 10.36 16 3 O -0.49 -15.58 16.07 -3.00 -0.05 -15.63 16 4 C -0.21 -5.49 5.87 -20.13 -0.12 -5.61 16 5 C -0.05 -1.26 8.98 22.68 0.20 -1.06 16 6 C 0.04 1.23 5.13 22.45 0.12 1.35 16 7 O -0.29 -10.17 9.92 4.13 0.04 -10.13 16 8 C 0.47 20.00 7.12 71.24 0.51 20.51 16 9 O -0.52 -24.34 14.95 21.96 0.33 -24.02 16 10 C 0.05 2.54 2.74 -12.28 -0.03 2.51 16 11 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 12 C -0.12 -5.32 8.90 71.98 0.64 -4.68 16 13 C -0.54 -28.54 8.37 25.60 0.21 -28.32 16 14 H 0.06 3.21 6.76 -2.91 -0.02 3.19 16 15 C 0.03 1.39 5.30 84.66 0.45 1.84 16 16 N -0.91 -47.63 11.32 21.45 0.24 -47.38 16 17 Si 0.96 41.80 29.54 68.60 2.03 43.83 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 21 C -0.06 -1.34 9.97 22.43 0.22 -1.11 16 22 C -0.14 -2.98 10.00 22.26 0.22 -2.76 16 23 C 0.14 3.55 7.29 22.73 0.17 3.71 16 24 F -0.13 -3.65 15.54 44.97 0.70 -2.95 16 25 H 0.12 1.51 8.09 -2.38 -0.02 1.49 16 26 H 0.10 1.49 8.12 -2.39 -0.02 1.47 16 27 H 0.11 1.70 8.09 -2.39 -0.02 1.68 16 28 H 0.16 3.75 7.05 -2.91 -0.02 3.73 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.96 8.11 -2.38 -0.02 1.94 16 31 H 0.08 3.69 6.07 -2.39 -0.01 3.68 16 32 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 33 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -63.70 307.49 7.85 -55.85 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.13 Total: 6.40 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 3.43 Total: -5.97 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.24 Total: -47.38 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: 0.32 Total: -49.77 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.70 Total: -2.95 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -63.70 7.85 -55.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873637943.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.054 kcal (2) G-P(sol) polarization free energy of solvation -63.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds