Wall clock time and date at job start Tue Mar 31 2020 01:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21285 * 120.00105 * 2 1 4 4 C 1.46989 * 120.00107 * 179.72913 * 2 1 3 5 5 C 1.39905 * 120.17043 * 359.72151 * 4 2 1 6 6 C 1.38258 * 119.79406 * 179.74623 * 5 4 2 7 7 O 1.35970 * 119.93103 * 180.23299 * 6 5 4 8 8 C 1.34247 * 116.99863 * 69.32533 * 7 6 5 9 9 O 1.20829 * 120.00246 * 5.77530 * 8 7 6 10 10 C 1.50707 * 119.99766 * 185.76832 * 8 7 6 11 11 H 1.08994 * 109.47092 * 300.00233 * 10 8 7 12 12 C 1.53001 * 109.46431 * 60.00259 * 10 8 7 13 13 C 1.50700 * 109.47223 * 179.97438 * 10 8 7 14 14 H 1.08002 * 119.99860 * 0.02562 * 13 10 8 15 15 C 1.37869 * 120.00010 * 180.02562 * 13 10 8 16 16 N 1.31512 * 120.00198 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99939 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47493 * 60.00336 * 17 15 13 19 19 H 1.48505 * 109.47265 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47267 * 299.99932 * 17 15 13 21 21 C 1.38971 * 120.13307 * 0.52715 * 6 5 4 22 22 C 1.38154 * 120.35031 * 359.72762 * 21 6 5 23 23 C 1.38285 * 120.20306 * 0.02562 * 22 21 6 24 24 F 1.35104 * 120.06930 * 179.97438 * 23 22 21 25 25 H 1.08996 * 109.46861 * 240.27301 * 1 2 3 26 26 H 1.09001 * 109.47274 * 0.27500 * 1 2 3 27 27 H 1.09002 * 109.47052 * 120.27331 * 1 2 3 28 28 H 1.07999 * 120.10592 * 359.97438 * 5 4 2 29 29 H 1.09008 * 109.46725 * 179.97438 * 12 10 8 30 30 H 1.08999 * 109.47272 * 299.99163 * 12 10 8 31 31 H 1.08994 * 109.47504 * 60.00227 * 12 10 8 32 32 H 0.97002 * 120.00142 * 179.97438 * 16 15 13 33 33 H 1.07998 * 119.82429 * 179.69598 * 21 6 5 34 34 H 1.07999 * 119.90400 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2419 -1.2729 0.0060 5 6 1.5461 -2.4866 0.0176 6 6 2.2452 -3.6794 0.0179 7 8 1.5717 -4.8605 0.0244 8 6 0.8978 -5.1840 -1.0907 9 8 0.9925 -4.4913 -2.0762 10 6 0.0234 -6.4112 -1.1135 11 1 0.6296 -7.2932 -0.9069 12 6 -1.0665 -6.2804 -0.0477 13 6 -0.6161 -6.5473 -2.4713 14 1 -0.4097 -5.8183 -3.2409 15 6 -1.4647 -7.6024 -2.7309 16 7 -1.7165 -8.4898 -1.7936 17 14 -2.2568 -7.7715 -4.4142 18 1 -1.1991 -7.8990 -5.4486 19 1 -3.1196 -8.9800 -4.4362 20 1 -3.0823 -6.5695 -4.6958 21 6 3.6349 -3.6735 0.0178 22 6 4.3279 -2.4784 0.0116 23 6 3.6430 -1.2771 0.0062 24 9 4.3234 -0.1099 0.0007 25 1 -0.3633 -0.5096 0.8924 26 1 -0.3634 1.0276 -0.0049 27 1 -0.3633 -0.5181 -0.8875 28 1 0.4661 -2.4918 0.0226 29 1 -1.6993 -7.1679 -0.0644 30 1 -0.6044 -6.1819 0.9345 31 1 -1.6728 -5.3985 -0.2543 32 1 -2.3139 -9.2320 -1.9762 33 1 4.1760 -4.6081 0.0229 34 1 5.4079 -2.4822 0.0120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873637945.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:01 Heat of formation + Delta-G solvation = -138.869442 kcal Electronic energy + Delta-G solvation = -21328.742140 eV Core-core repulsion = 17720.778427 eV Total energy + Delta-G solvation = -3607.963713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.00166 -40.94651 -39.57514 -38.02382 -36.16411 -34.06050 -32.38055 -30.92305 -29.65099 -29.54148 -25.35344 -24.39955 -24.20551 -22.31101 -20.65354 -19.71819 -17.89824 -17.46444 -17.12252 -16.37081 -16.28625 -15.83782 -15.67696 -14.98845 -14.83914 -14.67313 -14.54618 -14.27677 -13.62973 -13.36367 -12.93094 -12.79113 -12.41149 -12.33214 -12.03498 -11.90038 -11.71171 -11.17453 -10.95633 -10.86444 -10.83490 -10.46999 -10.17986 -9.87716 -9.52632 -9.37758 -9.21903 -8.62491 -8.55119 -6.22607 -4.29464 0.32450 0.88076 2.13336 2.92878 3.10063 3.25380 3.29009 3.34147 3.62492 3.76623 4.01505 4.31282 4.43342 4.74237 4.90823 4.94194 5.11037 5.18958 5.22931 5.27813 5.51990 5.69341 5.78659 5.88001 6.01310 6.08408 6.46494 6.51205 6.67991 6.74247 7.03187 7.25485 7.31447 7.59928 7.80410 7.98210 8.59137 8.78576 9.37190 10.84476 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025790 B = 0.004200 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.416331 B = 6664.296361 C = 7051.866546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.397 3.603 3 O -0.450 6.450 4 C -0.195 4.195 5 C -0.055 4.055 6 C 0.080 3.920 7 O -0.302 6.302 8 C 0.463 3.537 9 O -0.495 6.495 10 C 0.062 3.938 11 H 0.068 0.932 12 C -0.136 4.136 13 C -0.518 4.518 14 H 0.076 0.924 15 C 0.065 3.935 16 N -0.890 5.890 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.063 4.063 22 C -0.153 4.153 23 C 0.145 3.855 24 F -0.119 7.119 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.147 0.853 29 H 0.099 0.901 30 H 0.025 0.975 31 H 0.033 0.967 32 H 0.266 0.734 33 H 0.148 0.852 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 9.303 6.485 12.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.275 3.725 3 O -0.325 6.325 4 C -0.197 4.197 5 C -0.074 4.074 6 C 0.038 3.962 7 O -0.219 6.219 8 C 0.308 3.692 9 O -0.378 6.378 10 C 0.043 3.957 11 H 0.086 0.914 12 C -0.194 4.194 13 C -0.556 4.556 14 H 0.094 0.906 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.734 3.266 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.082 4.082 22 C -0.172 4.172 23 C 0.125 3.875 24 F -0.097 7.097 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.165 0.835 29 H 0.118 0.882 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.165 0.835 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.527 9.957 6.179 13.414 hybrid contribution -0.280 -0.064 -0.906 0.951 sum 6.247 9.893 5.273 12.834 Atomic orbital electron populations 1.22257 0.92894 1.05389 1.05161 1.22327 0.92031 0.86847 0.71306 1.90588 1.72139 1.33817 1.35938 1.20436 0.92454 0.96021 1.10752 1.21559 1.01141 0.90036 0.94645 1.18569 0.90775 0.85489 1.01346 1.84884 1.60034 1.34543 1.42432 1.26030 0.76444 0.88092 0.78633 1.90557 1.60391 1.52397 1.34464 1.18843 0.91362 0.86790 0.98666 0.91390 1.21780 0.99431 1.03475 0.94705 1.21056 1.27551 1.11088 0.95891 0.90611 1.24917 0.96037 0.95139 0.97664 1.69853 1.36480 1.13605 1.32860 0.86411 0.79219 0.77524 0.83480 1.20019 1.21119 1.20023 1.21262 0.92580 0.98860 0.95488 1.20975 1.01252 0.90123 1.04802 1.17888 0.88923 0.81876 0.98813 1.91570 1.79338 1.45890 1.92891 0.88512 0.89398 0.88292 0.83516 0.88249 0.95574 0.94814 0.92450 0.83464 0.83389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 8.93 36.00 0.32 -1.64 16 2 C 0.40 5.35 7.22 -30.77 -0.22 5.13 16 3 O -0.45 -7.34 16.07 5.55 0.09 -7.25 16 4 C -0.19 -2.72 5.87 -105.03 -0.62 -3.34 16 5 C -0.06 -0.79 8.75 -38.95 -0.34 -1.13 16 6 C 0.08 1.25 5.26 -39.30 -0.21 1.05 16 7 O -0.30 -5.44 9.94 -23.72 -0.24 -5.67 16 8 C 0.46 9.86 7.02 36.01 0.25 10.12 16 9 O -0.49 -11.56 14.88 -18.75 -0.28 -11.84 16 10 C 0.06 1.45 2.74 -92.92 -0.25 1.20 16 11 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 12 C -0.14 -2.93 8.90 37.16 0.33 -2.60 16 13 C -0.52 -13.60 8.37 -34.44 -0.29 -13.89 16 14 H 0.08 2.08 6.76 -52.49 -0.35 1.72 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 16 N -0.89 -23.43 11.32 55.43 0.63 -22.80 16 17 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C -0.06 -0.82 9.97 -39.34 -0.39 -1.21 16 22 C -0.15 -1.81 10.00 -39.59 -0.40 -2.20 16 23 C 0.14 2.01 7.29 -38.86 -0.28 1.73 16 24 F -0.12 -1.77 15.54 2.25 0.04 -1.74 16 25 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 26 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 27 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 28 H 0.15 1.92 7.05 -52.49 -0.37 1.55 16 29 H 0.10 2.35 6.07 -51.92 -0.31 2.03 16 30 H 0.03 0.48 8.11 -51.93 -0.42 0.06 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -29.61 307.23 -5.89 -35.50 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -3.55 Total: -1.09 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.19 Total: -5.21 kcal Atomic # 7 Polarization: -23.43 SS G_CDS: 0.63 Total: -22.80 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.43 Total: -24.76 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.61 -5.89 -35.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873637945.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.370 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds