Wall clock time and date at job start Tue Mar 31 2020 01:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21285 * 120.00105 * 2 1 4 4 C 1.46989 * 120.00107 * 179.72913 * 2 1 3 5 5 C 1.39905 * 120.17043 * 359.72151 * 4 2 1 6 6 C 1.38258 * 119.79406 * 179.74623 * 5 4 2 7 7 O 1.35970 * 119.93103 * 180.23299 * 6 5 4 8 8 C 1.34247 * 116.99863 * 69.32533 * 7 6 5 9 9 O 1.20829 * 120.00246 * 5.77530 * 8 7 6 10 10 C 1.50707 * 119.99766 * 185.76832 * 8 7 6 11 11 H 1.08994 * 109.47092 * 300.00233 * 10 8 7 12 12 C 1.53001 * 109.46431 * 60.00259 * 10 8 7 13 13 C 1.50700 * 109.47223 * 179.97438 * 10 8 7 14 14 H 1.08002 * 119.99860 * 0.02562 * 13 10 8 15 15 C 1.37869 * 120.00010 * 180.02562 * 13 10 8 16 16 N 1.31512 * 120.00198 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99939 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47493 * 60.00336 * 17 15 13 19 19 H 1.48505 * 109.47265 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47267 * 299.99932 * 17 15 13 21 21 C 1.38971 * 120.13307 * 0.52715 * 6 5 4 22 22 C 1.38154 * 120.35031 * 359.72762 * 21 6 5 23 23 C 1.38285 * 120.20306 * 0.02562 * 22 21 6 24 24 F 1.35104 * 120.06930 * 179.97438 * 23 22 21 25 25 H 1.08996 * 109.46861 * 240.27301 * 1 2 3 26 26 H 1.09001 * 109.47274 * 0.27500 * 1 2 3 27 27 H 1.09002 * 109.47052 * 120.27331 * 1 2 3 28 28 H 1.07999 * 120.10592 * 359.97438 * 5 4 2 29 29 H 1.09008 * 109.46725 * 179.97438 * 12 10 8 30 30 H 1.08999 * 109.47272 * 299.99163 * 12 10 8 31 31 H 1.08994 * 109.47504 * 60.00227 * 12 10 8 32 32 H 0.97002 * 120.00142 * 179.97438 * 16 15 13 33 33 H 1.07998 * 119.82429 * 179.69598 * 21 6 5 34 34 H 1.07999 * 119.90400 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2419 -1.2729 0.0060 5 6 1.5461 -2.4866 0.0176 6 6 2.2452 -3.6794 0.0179 7 8 1.5717 -4.8605 0.0244 8 6 0.8978 -5.1840 -1.0907 9 8 0.9925 -4.4913 -2.0762 10 6 0.0234 -6.4112 -1.1135 11 1 0.6296 -7.2932 -0.9069 12 6 -1.0665 -6.2804 -0.0477 13 6 -0.6161 -6.5473 -2.4713 14 1 -0.4097 -5.8183 -3.2409 15 6 -1.4647 -7.6024 -2.7309 16 7 -1.7165 -8.4898 -1.7936 17 14 -2.2568 -7.7715 -4.4142 18 1 -1.1991 -7.8990 -5.4486 19 1 -3.1196 -8.9800 -4.4362 20 1 -3.0823 -6.5695 -4.6958 21 6 3.6349 -3.6735 0.0178 22 6 4.3279 -2.4784 0.0116 23 6 3.6430 -1.2771 0.0062 24 9 4.3234 -0.1099 0.0007 25 1 -0.3633 -0.5096 0.8924 26 1 -0.3634 1.0276 -0.0049 27 1 -0.3633 -0.5181 -0.8875 28 1 0.4661 -2.4918 0.0226 29 1 -1.6993 -7.1679 -0.0644 30 1 -0.6044 -6.1819 0.9345 31 1 -1.6728 -5.3985 -0.2543 32 1 -2.3139 -9.2320 -1.9762 33 1 4.1760 -4.6081 0.0229 34 1 5.4079 -2.4822 0.0120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873637945.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:01 Heat of formation + Delta-G solvation = -153.757380 kcal Electronic energy + Delta-G solvation = -21329.387730 eV Core-core repulsion = 17720.778427 eV Total energy + Delta-G solvation = -3608.609302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.13157 -42.35884 -40.74229 -39.29709 -37.63440 -35.93914 -33.41415 -32.75047 -30.87353 -30.44216 -27.27205 -25.78380 -25.41099 -23.66120 -22.02388 -21.01190 -19.08622 -18.80289 -18.34398 -18.16417 -17.95927 -16.97797 -16.91082 -16.50144 -16.20228 -15.88719 -15.72641 -15.27225 -15.09566 -14.79862 -14.42487 -14.15295 -13.59915 -13.30389 -13.19044 -13.12841 -12.98619 -12.97276 -12.75681 -12.61192 -12.34785 -12.15207 -12.04797 -11.22330 -11.10967 -10.95116 -10.52784 -10.42516 -9.79577 -8.19156 -6.32340 -0.75243 -0.23269 1.06385 1.29884 1.45965 1.46049 1.53918 1.78557 2.39993 2.49479 2.77670 2.94457 3.11847 3.43109 3.65438 3.84150 4.00419 4.04248 4.38894 4.49219 4.54022 4.61385 4.72150 4.72294 4.79157 4.89412 4.94342 5.03911 5.10653 5.28023 5.43576 5.59507 5.71554 5.91463 6.11313 6.28267 6.73754 6.99433 7.36984 8.86549 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025790 B = 0.004200 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.416331 B = 6664.296361 C = 7051.866546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.397 3.603 3 O -0.485 6.485 4 C -0.206 4.206 5 C -0.052 4.052 6 C 0.044 3.956 7 O -0.292 6.292 8 C 0.474 3.526 9 O -0.520 6.520 10 C 0.055 3.945 11 H 0.057 0.943 12 C -0.124 4.124 13 C -0.539 4.539 14 H 0.058 0.942 15 C 0.027 3.973 16 N -0.906 5.906 17 Si 0.959 3.041 18 H -0.276 1.276 19 H -0.276 1.276 20 H -0.273 1.273 21 C -0.055 4.055 22 C -0.138 4.138 23 C 0.133 3.867 24 F -0.126 7.126 25 H 0.118 0.882 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.156 0.844 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.268 0.732 33 H 0.172 0.828 34 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.580 9.424 6.790 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.277 3.723 3 O -0.363 6.363 4 C -0.208 4.208 5 C -0.071 4.071 6 C 0.002 3.998 7 O -0.208 6.208 8 C 0.320 3.680 9 O -0.406 6.406 10 C 0.036 3.964 11 H 0.075 0.925 12 C -0.182 4.182 13 C -0.577 4.577 14 H 0.076 0.924 15 C -0.173 4.173 16 N -0.544 5.544 17 Si 0.784 3.216 18 H -0.201 1.201 19 H -0.201 1.201 20 H -0.199 1.199 21 C -0.073 4.073 22 C -0.156 4.156 23 C 0.114 3.886 24 F -0.105 7.105 25 H 0.137 0.863 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.173 0.827 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.189 0.811 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.851 10.068 6.514 13.811 hybrid contribution -0.281 -0.063 -0.943 0.986 sum 6.570 10.005 5.571 13.203 Atomic orbital electron populations 1.22297 0.90044 1.06514 1.06384 1.22831 0.93593 0.86057 0.69827 1.90576 1.73100 1.34725 1.37900 1.20583 0.92842 0.96208 1.11135 1.21613 1.01677 0.89744 0.94060 1.18929 0.91952 0.84740 1.04131 1.84819 1.59737 1.35747 1.40538 1.25400 0.76312 0.87234 0.79055 1.90539 1.61411 1.53096 1.35578 1.18735 0.92124 0.87583 0.98002 0.92548 1.21614 0.98650 1.02418 0.95533 1.21198 1.28392 1.11074 0.96992 0.92399 1.25546 0.96364 0.94854 1.00566 1.69935 1.36686 1.13783 1.34039 0.85594 0.78394 0.77694 0.79891 1.20140 1.20142 1.19869 1.21544 0.91568 1.00327 0.93889 1.21292 1.02878 0.88667 1.02795 1.18253 0.89223 0.82329 0.98842 1.91554 1.79428 1.46519 1.92963 0.86342 0.88432 0.87680 0.82676 0.90366 0.92888 0.94661 0.92234 0.81079 0.79884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.52 8.93 71.23 0.64 -2.89 16 2 C 0.40 10.37 7.22 27.98 0.20 10.57 16 3 O -0.49 -15.73 16.07 -3.05 -0.05 -15.78 16 4 C -0.21 -5.53 5.87 -20.13 -0.12 -5.65 16 5 C -0.05 -1.44 8.75 22.68 0.20 -1.24 16 6 C 0.04 1.30 5.26 22.45 0.12 1.42 16 7 O -0.29 -10.15 9.94 4.18 0.04 -10.11 16 8 C 0.47 19.96 7.02 71.24 0.50 20.46 16 9 O -0.52 -24.24 14.88 21.95 0.33 -23.91 16 10 C 0.05 2.55 2.74 -12.28 -0.03 2.51 16 11 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 12 C -0.12 -5.27 8.90 71.98 0.64 -4.63 16 13 C -0.54 -28.48 8.37 25.60 0.21 -28.26 16 14 H 0.06 3.22 6.76 -2.91 -0.02 3.20 16 15 C 0.03 1.41 5.30 84.65 0.45 1.86 16 16 N -0.91 -47.55 11.32 21.44 0.24 -47.31 16 17 Si 0.96 41.70 29.54 68.60 2.03 43.73 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 21 C -0.06 -1.29 9.97 22.43 0.22 -1.06 16 22 C -0.14 -2.89 10.00 22.26 0.22 -2.66 16 23 C 0.13 3.50 7.29 22.73 0.17 3.67 16 24 F -0.13 -3.65 15.54 44.97 0.70 -2.95 16 25 H 0.12 1.62 8.08 -2.39 -0.02 1.60 16 26 H 0.10 1.58 8.12 -2.39 -0.02 1.56 16 27 H 0.10 1.81 8.09 -2.39 -0.02 1.79 16 28 H 0.16 3.86 7.05 -2.91 -0.02 3.84 16 29 H 0.08 3.67 6.07 -2.38 -0.01 3.66 16 30 H 0.05 1.90 8.11 -2.39 -0.02 1.89 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 33 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -63.35 307.23 7.84 -55.51 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.13 Total: 6.72 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 3.42 Total: -5.89 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.24 Total: -47.31 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: 0.32 Total: -49.80 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.70 Total: -2.95 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -63.35 7.84 -55.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873637945.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.250 kcal (2) G-P(sol) polarization free energy of solvation -63.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds