Wall clock time and date at job start Tue Mar 31 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21269 * 120.00207 * 2 1 4 4 C 1.46991 * 119.99902 * 179.72868 * 2 1 3 5 5 C 1.39997 * 120.17098 * 359.72041 * 4 2 1 6 6 C 1.37776 * 119.95411 * 179.69480 * 5 4 2 7 7 C 1.38459 * 120.30234 * 0.60918 * 6 5 4 8 8 C 1.38649 * 120.34962 * 359.66968 * 7 6 5 9 9 O 1.35974 * 119.98324 * 180.02562 * 8 7 6 10 10 C 1.34243 * 117.00624 * 260.99837 * 9 8 7 11 11 O 1.20831 * 119.99540 * 5.38586 * 10 9 8 12 12 C 1.50701 * 120.00443 * 185.38724 * 10 9 8 13 13 H 1.09000 * 109.46796 * 300.00043 * 12 10 9 14 14 C 1.53008 * 109.46972 * 59.99855 * 12 10 9 15 15 C 1.50695 * 109.47302 * 180.02562 * 12 10 9 16 16 H 1.08002 * 120.00061 * 359.97438 * 15 12 10 17 17 C 1.37875 * 120.00081 * 180.02562 * 15 12 10 18 18 N 1.31515 * 120.00170 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99975 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47625 * 59.99992 * 19 17 15 21 21 H 1.48512 * 109.47079 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47129 * 299.99648 * 19 17 15 23 23 C 1.38778 * 120.03820 * 0.02657 * 8 7 6 24 24 F 1.35094 * 120.15177 * 179.97438 * 23 8 7 25 25 H 1.09006 * 109.47262 * 270.27079 * 1 2 3 26 26 H 1.09000 * 109.47623 * 30.27275 * 1 2 3 27 27 H 1.09003 * 109.47206 * 150.27689 * 1 2 3 28 28 H 1.07998 * 120.02300 * 0.02562 * 5 4 2 29 29 H 1.07999 * 119.84439 * 180.27435 * 6 5 4 30 30 H 1.08004 * 119.82633 * 179.69355 * 7 6 5 31 31 H 1.08998 * 109.46594 * 180.02562 * 14 12 10 32 32 H 1.08994 * 109.47151 * 300.00258 * 14 12 10 33 33 H 1.09005 * 109.46815 * 60.00243 * 14 12 10 34 34 H 0.96995 * 120.00478 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2419 -1.2730 0.0060 5 6 1.5455 -2.4874 0.0177 6 6 2.2388 -3.6780 0.0169 7 6 3.6234 -3.6801 0.0174 8 6 4.3258 -2.4848 0.0117 9 8 5.6855 -2.4956 0.0117 10 6 6.2966 -2.3077 1.1921 11 8 5.6432 -2.2365 2.2060 12 6 7.7974 -2.1856 1.2527 13 1 8.2521 -3.0963 0.8628 14 6 8.2463 -0.9901 0.4098 15 6 8.2276 -1.9824 2.6826 16 1 7.4881 -1.9450 3.4689 17 6 9.5651 -1.8432 2.9870 18 7 10.4656 -1.8882 2.0296 19 14 10.0982 -1.5906 4.7594 20 1 9.6631 -2.7510 5.5775 21 1 11.5773 -1.4704 4.8191 22 1 9.4784 -0.3501 5.2908 23 6 3.6419 -1.2772 0.0061 24 9 4.3240 -0.1111 0.0011 25 1 -0.3634 0.0049 1.0277 26 1 -0.3634 0.8875 -0.5180 27 1 -0.3634 -0.8925 -0.5095 28 1 0.4655 -2.4910 0.0219 29 1 1.6998 -4.6138 0.0215 30 1 4.1591 -4.6179 0.0218 31 1 9.3318 -0.9021 0.4533 32 1 7.9352 -1.1375 -0.6244 33 1 7.7916 -0.0794 0.7997 34 1 11.4065 -1.7899 2.2436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873639930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:06 Heat of formation + Delta-G solvation = -134.971726 kcal Electronic energy + Delta-G solvation = -21645.955646 eV Core-core repulsion = 18038.160951 eV Total energy + Delta-G solvation = -3607.794695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.81165 -40.71893 -39.65988 -38.04601 -36.22639 -33.97674 -32.05002 -30.82988 -30.25059 -29.26849 -25.26196 -24.53668 -23.90570 -22.27507 -20.66413 -19.72338 -17.90576 -17.21960 -17.07517 -16.37886 -16.27055 -15.80529 -15.54736 -15.01695 -14.83260 -14.78956 -14.46393 -14.41188 -13.48575 -13.10901 -12.77456 -12.64399 -12.48301 -12.34107 -12.12636 -11.88789 -11.63140 -11.09085 -10.88968 -10.77624 -10.74849 -10.37853 -10.11126 -9.85907 -9.54715 -9.14390 -9.10163 -8.70428 -8.48800 -6.15040 -4.21492 0.34689 0.89390 2.15520 2.97949 3.16204 3.31070 3.33726 3.39363 3.59074 3.82315 4.05359 4.38233 4.50078 4.67353 4.77119 4.94610 5.06858 5.15011 5.18216 5.28486 5.57477 5.63283 5.82760 5.95894 5.97037 6.07105 6.51159 6.62348 6.78944 6.86538 7.07991 7.34076 7.36364 7.69019 7.88388 8.06377 8.66152 8.86009 9.44327 10.92241 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.026723 B = 0.004522 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.530318 B = 6190.054700 C = 6474.155898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.391 3.609 3 O -0.443 6.443 4 C -0.203 4.203 5 C -0.055 4.055 6 C -0.131 4.131 7 C -0.065 4.065 8 C 0.054 3.946 9 O -0.299 6.299 10 C 0.464 3.536 11 O -0.496 6.496 12 C 0.064 3.936 13 H 0.069 0.931 14 C -0.136 4.136 15 C -0.517 4.517 16 H 0.075 0.925 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.150 3.850 24 F -0.105 7.105 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.099 0.901 32 H 0.024 0.976 33 H 0.034 0.966 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.461 -3.396 -6.825 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.268 3.732 3 O -0.317 6.317 4 C -0.205 4.205 5 C -0.073 4.073 6 C -0.150 4.150 7 C -0.084 4.084 8 C 0.011 3.989 9 O -0.216 6.216 10 C 0.309 3.691 11 O -0.379 6.379 12 C 0.045 3.955 13 H 0.086 0.914 14 C -0.194 4.194 15 C -0.554 4.554 16 H 0.094 0.906 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.734 3.266 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.130 3.870 24 F -0.083 7.083 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.118 0.882 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.111 -2.754 -6.509 19.441 hybrid contribution 0.382 0.187 0.935 1.027 sum -17.729 -2.567 -5.574 18.761 Atomic orbital electron populations 1.22194 0.93023 1.04965 1.04944 1.22322 0.91875 0.87057 0.71976 1.90633 1.71972 1.33914 1.35182 1.20553 0.91645 0.97016 1.11252 1.21347 1.00370 0.90368 0.95222 1.21022 0.93195 0.98683 1.02049 1.21462 0.94562 0.97294 0.95034 1.18653 0.84080 0.91760 1.04424 1.84910 1.15158 1.83606 1.37960 1.26115 0.93689 0.70218 0.79094 1.90537 1.67085 1.45153 1.35110 1.18848 0.78660 0.98593 0.99392 0.91368 1.21772 1.05373 0.96758 0.95450 1.21061 0.92783 1.50903 0.90697 0.90650 1.24923 0.96156 0.94593 0.98121 1.69861 1.01507 1.49551 1.31945 0.86397 0.77154 0.79060 0.83940 1.20026 1.21097 1.20003 1.18295 0.89367 0.81593 0.97763 1.91612 1.79307 1.45113 1.92279 0.88272 0.89209 0.89428 0.83724 0.83980 0.83673 0.88225 0.95648 0.94698 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 9.75 36.00 0.35 -1.06 16 2 C 0.39 5.14 7.22 -30.77 -0.22 4.91 16 3 O -0.44 -7.82 16.09 5.57 0.09 -7.73 16 4 C -0.20 -2.81 5.87 -105.03 -0.62 -3.42 16 5 C -0.05 -0.53 9.36 -39.09 -0.37 -0.89 16 6 C -0.13 -1.28 10.02 -39.67 -0.40 -1.68 16 7 C -0.07 -0.87 9.97 -39.35 -0.39 -1.27 16 8 C 0.05 0.97 4.96 -39.23 -0.19 0.78 16 9 O -0.30 -6.28 9.79 -23.72 -0.23 -6.51 16 10 C 0.46 11.21 7.15 36.01 0.26 11.47 16 11 O -0.50 -12.96 15.20 -18.75 -0.28 -13.24 16 12 C 0.06 1.65 2.74 -92.92 -0.25 1.39 16 13 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 14 C -0.14 -3.32 8.90 37.16 0.33 -2.99 16 15 C -0.52 -14.59 8.37 -34.44 -0.29 -14.88 16 16 H 0.08 2.22 6.76 -52.49 -0.35 1.86 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 19 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.15 2.74 7.24 -38.72 -0.28 2.46 16 24 F -0.11 -2.25 15.39 2.25 0.03 -2.22 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.39 6.47 -51.93 -0.34 0.05 16 28 H 0.15 0.75 6.36 -52.49 -0.33 0.41 16 29 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 30 H 0.15 1.68 8.06 -52.48 -0.42 1.25 16 31 H 0.10 2.58 6.07 -51.93 -0.32 2.26 16 32 H 0.02 0.54 8.11 -51.93 -0.42 0.12 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 306.26 15.07 4.62 4.62 Total: -1.00 -33.64 306.26 -5.77 -39.41 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -3.43 Total: -3.24 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.17 Total: -3.52 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.63 Total: -24.11 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.43 Total: -27.49 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.03 Total: -2.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.64 -5.77 -39.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873639930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.561 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds