Wall clock time and date at job start Tue Mar 31 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21269 * 120.00207 * 2 1 4 4 C 1.46991 * 119.99902 * 179.72868 * 2 1 3 5 5 C 1.39997 * 120.17098 * 359.72041 * 4 2 1 6 6 C 1.37776 * 119.95411 * 179.69480 * 5 4 2 7 7 C 1.38459 * 120.30234 * 0.60918 * 6 5 4 8 8 C 1.38649 * 120.34962 * 359.66968 * 7 6 5 9 9 O 1.35974 * 119.98324 * 180.02562 * 8 7 6 10 10 C 1.34243 * 117.00624 * 260.99837 * 9 8 7 11 11 O 1.20831 * 119.99540 * 5.38586 * 10 9 8 12 12 C 1.50701 * 120.00443 * 185.38724 * 10 9 8 13 13 H 1.09000 * 109.46796 * 300.00043 * 12 10 9 14 14 C 1.53008 * 109.46972 * 59.99855 * 12 10 9 15 15 C 1.50695 * 109.47302 * 180.02562 * 12 10 9 16 16 H 1.08002 * 120.00061 * 359.97438 * 15 12 10 17 17 C 1.37875 * 120.00081 * 180.02562 * 15 12 10 18 18 N 1.31515 * 120.00170 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99975 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47625 * 59.99992 * 19 17 15 21 21 H 1.48512 * 109.47079 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47129 * 299.99648 * 19 17 15 23 23 C 1.38778 * 120.03820 * 0.02657 * 8 7 6 24 24 F 1.35094 * 120.15177 * 179.97438 * 23 8 7 25 25 H 1.09006 * 109.47262 * 270.27079 * 1 2 3 26 26 H 1.09000 * 109.47623 * 30.27275 * 1 2 3 27 27 H 1.09003 * 109.47206 * 150.27689 * 1 2 3 28 28 H 1.07998 * 120.02300 * 0.02562 * 5 4 2 29 29 H 1.07999 * 119.84439 * 180.27435 * 6 5 4 30 30 H 1.08004 * 119.82633 * 179.69355 * 7 6 5 31 31 H 1.08998 * 109.46594 * 180.02562 * 14 12 10 32 32 H 1.08994 * 109.47151 * 300.00258 * 14 12 10 33 33 H 1.09005 * 109.46815 * 60.00243 * 14 12 10 34 34 H 0.96995 * 120.00478 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2419 -1.2730 0.0060 5 6 1.5455 -2.4874 0.0177 6 6 2.2388 -3.6780 0.0169 7 6 3.6234 -3.6801 0.0174 8 6 4.3258 -2.4848 0.0117 9 8 5.6855 -2.4956 0.0117 10 6 6.2966 -2.3077 1.1921 11 8 5.6432 -2.2365 2.2060 12 6 7.7974 -2.1856 1.2527 13 1 8.2521 -3.0963 0.8628 14 6 8.2463 -0.9901 0.4098 15 6 8.2276 -1.9824 2.6826 16 1 7.4881 -1.9450 3.4689 17 6 9.5651 -1.8432 2.9870 18 7 10.4656 -1.8882 2.0296 19 14 10.0982 -1.5906 4.7594 20 1 9.6631 -2.7510 5.5775 21 1 11.5773 -1.4704 4.8191 22 1 9.4784 -0.3501 5.2908 23 6 3.6419 -1.2772 0.0061 24 9 4.3240 -0.1111 0.0011 25 1 -0.3634 0.0049 1.0277 26 1 -0.3634 0.8875 -0.5180 27 1 -0.3634 -0.8925 -0.5095 28 1 0.4655 -2.4910 0.0219 29 1 1.6998 -4.6138 0.0215 30 1 4.1591 -4.6179 0.0218 31 1 9.3318 -0.9021 0.4533 32 1 7.9352 -1.1375 -0.6244 33 1 7.7916 -0.0794 0.7997 34 1 11.4065 -1.7899 2.2436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873639930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:05 Heat of formation + Delta-G solvation = -155.859732 kcal Electronic energy + Delta-G solvation = -21646.861418 eV Core-core repulsion = 18038.160951 eV Total energy + Delta-G solvation = -3608.700467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.22440 -42.29794 -40.79007 -39.31696 -37.84266 -36.05129 -33.17167 -32.68339 -31.38581 -30.15088 -27.39140 -26.00447 -25.15756 -23.68187 -22.14995 -21.02487 -19.27215 -18.68848 -18.36734 -18.24382 -18.01093 -17.03824 -16.99332 -16.54729 -16.29785 -15.88816 -15.77951 -15.66429 -15.01050 -14.84584 -14.45504 -13.78977 -13.50061 -13.45208 -13.19201 -13.09393 -13.00856 -12.87206 -12.73835 -12.67431 -12.45473 -12.25387 -12.10613 -11.39404 -11.24037 -10.89118 -10.61656 -10.22595 -9.89687 -8.26577 -6.41240 -0.67616 -0.24720 1.11669 1.19355 1.39076 1.41586 1.49447 1.79374 2.37699 2.50168 2.76778 2.99211 3.03389 3.58408 3.75122 3.85629 4.02775 4.12956 4.39797 4.54324 4.63547 4.67626 4.73425 4.74764 4.77467 4.88534 4.98664 5.04696 5.21673 5.26461 5.29579 5.57230 5.63645 5.77836 5.98386 6.40744 6.63634 6.85622 7.27710 8.80062 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.026723 B = 0.004522 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.530318 B = 6190.054700 C = 6474.155898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.386 3.614 3 O -0.505 6.505 4 C -0.216 4.216 5 C -0.021 4.021 6 C -0.109 4.109 7 C -0.067 4.067 8 C 0.001 3.999 9 O -0.299 6.299 10 C 0.469 3.531 11 O -0.524 6.524 12 C 0.056 3.944 13 H 0.062 0.938 14 C -0.122 4.122 15 C -0.544 4.544 16 H 0.055 0.945 17 C 0.025 3.975 18 N -0.907 5.907 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.277 1.277 23 C 0.099 3.901 24 F -0.142 7.142 25 H 0.121 0.879 26 H 0.093 0.907 27 H 0.129 0.871 28 H 0.208 0.792 29 H 0.200 0.800 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.021 0.979 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.901 -5.403 -6.820 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.267 3.733 3 O -0.384 6.384 4 C -0.218 4.218 5 C -0.039 4.039 6 C -0.126 4.126 7 C -0.085 4.085 8 C -0.041 4.041 9 O -0.215 6.215 10 C 0.316 3.684 11 O -0.410 6.410 12 C 0.037 3.963 13 H 0.080 0.920 14 C -0.180 4.180 15 C -0.582 4.582 16 H 0.074 0.926 17 C -0.175 4.175 18 N -0.545 5.545 19 Si 0.791 3.209 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.203 1.203 23 C 0.079 3.921 24 F -0.120 7.120 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.147 0.853 28 H 0.225 0.775 29 H 0.217 0.783 30 H 0.178 0.822 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.565 -4.788 -6.544 23.039 hybrid contribution 1.267 0.708 0.840 1.677 sum -20.298 -4.080 -5.703 21.475 Atomic orbital electron populations 1.22272 0.87517 1.07302 1.06842 1.23351 0.94627 0.85751 0.69561 1.90620 1.73726 1.35787 1.38258 1.21070 0.89934 0.99639 1.11115 1.22125 1.03121 0.88129 0.90493 1.21724 0.91369 1.01131 0.98368 1.21874 0.96607 0.95976 0.94040 1.19209 0.82430 0.93740 1.08753 1.84809 1.17892 1.82954 1.35877 1.25598 0.93304 0.69755 0.79770 1.90488 1.67685 1.46546 1.36324 1.18750 0.80413 0.98537 0.98572 0.91988 1.21595 1.04155 0.95802 0.96415 1.21164 0.93104 1.52433 0.91487 0.92636 1.25653 0.95877 0.93892 1.02095 1.69934 1.01855 1.49139 1.33524 0.85481 0.77408 0.78794 0.79216 1.19453 1.19451 1.20282 1.18979 0.91544 0.80579 1.00985 1.91502 1.80369 1.47043 1.93130 0.86107 0.88794 0.85254 0.77501 0.78312 0.82170 0.89547 0.93628 0.96020 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.75 71.23 0.69 -1.16 16 2 C 0.39 9.71 7.22 27.98 0.20 9.91 16 3 O -0.51 -18.71 16.09 -2.99 -0.05 -18.76 16 4 C -0.22 -5.65 5.87 -20.13 -0.12 -5.76 16 5 C -0.02 -0.29 9.36 22.59 0.21 -0.08 16 6 C -0.11 -1.52 10.02 22.21 0.22 -1.29 16 7 C -0.07 -1.66 9.97 22.42 0.22 -1.43 16 8 C 0.00 0.03 4.96 22.50 0.11 0.14 16 9 O -0.30 -13.26 9.79 4.19 0.04 -13.22 16 10 C 0.47 23.99 7.15 71.24 0.51 24.50 16 11 O -0.52 -28.91 15.20 21.95 0.33 -28.58 16 12 C 0.06 3.04 2.74 -12.28 -0.03 3.01 16 13 H 0.06 3.38 8.14 -2.39 -0.02 3.36 16 14 C -0.12 -6.26 8.90 71.98 0.64 -5.62 16 15 C -0.54 -32.04 8.37 25.60 0.21 -31.82 16 16 H 0.06 3.43 6.76 -2.91 -0.02 3.41 16 17 C 0.03 1.42 5.30 84.65 0.45 1.87 16 18 N -0.91 -51.19 11.32 21.45 0.24 -50.94 16 19 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 C 0.10 3.77 7.24 22.83 0.17 3.93 16 24 F -0.14 -6.66 15.39 44.97 0.69 -5.97 16 25 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.13 0.20 6.47 -2.39 -0.02 0.19 16 28 H 0.21 0.25 6.36 -2.91 -0.02 0.23 16 29 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 30 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.09 4.65 6.07 -2.39 -0.01 4.64 16 32 H 0.04 2.08 8.11 -2.39 -0.02 2.06 16 33 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -82.82 306.26 7.92 -74.90 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: 1.14 Total: -0.40 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 3.49 Total: -3.81 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.24 Total: -50.94 kcal Atomic # 8 Polarization: -60.88 SS G_CDS: 0.33 Total: -60.56 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.69 Total: -5.97 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -82.82 7.92 -74.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873639930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.960 kcal (2) G-P(sol) polarization free energy of solvation -82.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds