Wall clock time and date at job start Tue Mar 31 2020 00:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47089 * 2 1 4 4 C 1.36938 * 119.99851 * 275.40493 * 3 2 1 5 5 H 1.08001 * 119.99733 * 34.07263 * 4 3 2 6 6 C 1.38809 * 119.99601 * 214.07733 * 4 3 2 7 7 N 1.31617 * 120.00342 * 22.95347 * 6 4 3 8 8 Si 1.86801 * 119.99936 * 202.95081 * 6 4 3 9 9 H 1.48505 * 109.46699 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47062 * 120.00138 * 8 6 4 11 11 H 1.48497 * 109.47480 * 240.00354 * 8 6 4 12 12 C 1.46500 * 119.99672 * 95.40327 * 3 2 1 13 13 C 1.50698 * 109.47121 * 269.99669 * 12 3 2 14 14 C 1.34037 * 124.91307 * 90.00674 * 13 12 3 15 15 C 1.46626 * 106.17655 * 180.02562 * 14 13 12 16 16 C 1.40820 * 105.40419 * 359.97438 * 15 14 13 17 17 C 1.39179 * 118.01867 * 179.97438 * 16 15 14 18 18 C 1.37793 * 118.94393 * 0.02562 * 17 16 15 19 19 N 1.32247 * 121.53645 * 0.03692 * 18 17 16 20 20 C 1.31885 * 122.09039 * 359.94291 * 19 18 17 21 21 Cl 1.73608 * 119.96561 * 180.32126 * 20 19 18 22 22 O 1.34367 * 107.35631 * 0.02562 * 16 15 14 23 23 H 1.09004 * 109.46923 * 299.99713 * 1 2 3 24 24 H 1.08997 * 109.47389 * 60.00314 * 1 2 3 25 25 H 1.09001 * 109.46969 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47288 * 240.00151 * 2 1 3 27 27 H 1.08997 * 109.47389 * 119.99686 * 2 1 3 28 28 H 0.96997 * 119.99774 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.46619 * 150.00117 * 12 3 2 30 30 H 1.08993 * 109.47681 * 30.00348 * 12 3 2 31 31 H 1.08003 * 126.91480 * 359.97438 * 14 13 12 32 32 H 1.07998 * 120.52758 * 179.97438 * 17 16 15 33 33 H 1.08003 * 119.23129 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1412 2.0640 -1.1807 5 1 1.4398 1.8867 -1.9825 6 6 3.1674 2.9839 -1.3468 7 7 4.2557 2.8957 -0.6119 8 14 3.0038 4.3470 -2.6135 9 1 1.6942 4.2270 -3.3034 10 1 3.0866 5.6655 -1.9354 11 1 4.1002 4.2324 -3.6085 12 6 2.3751 2.0320 1.2631 13 6 1.1639 2.7267 1.8300 14 6 0.2788 2.1656 2.6657 15 6 -0.7226 3.1975 2.9531 16 6 -0.3132 4.3297 2.2226 17 6 -1.0922 5.4799 2.3084 18 6 -2.2213 5.4632 3.0980 19 7 -2.5777 4.3830 3.7727 20 6 -1.8775 3.2663 3.7280 21 17 -2.4007 1.8780 4.6296 22 8 0.8142 3.9998 1.5703 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.9729 3.5383 -0.7283 29 1 3.1633 2.7636 1.0849 30 1 2.7285 1.2824 1.9710 31 1 0.2986 1.1563 3.0496 32 1 -0.8156 6.3715 1.7655 33 1 -2.8295 6.3530 3.1676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876632213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:23 Heat of formation + Delta-G solvation = 50.646248 kcal Electronic energy + Delta-G solvation = -19628.984759 eV Core-core repulsion = 16489.868190 eV Total energy + Delta-G solvation = -3139.116569 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.26014 -38.88952 -36.52107 -36.21509 -32.63777 -32.02525 -31.53965 -30.38107 -28.72004 -26.10166 -24.04936 -23.36759 -22.25838 -21.05498 -20.43568 -17.75082 -17.18235 -16.48371 -15.97871 -15.83067 -15.01159 -14.67133 -14.13947 -14.01795 -13.86359 -13.68556 -13.15942 -12.77712 -12.46911 -11.93676 -11.61888 -11.53098 -11.36001 -11.28336 -11.18955 -10.86613 -10.69667 -10.27223 -10.24516 -10.08617 -9.73324 -9.70314 -9.13405 -8.71501 -7.82549 -6.92604 -6.04278 -3.57491 0.77785 1.38112 1.89735 2.72308 3.01485 3.26720 3.35573 3.38633 3.74462 4.32965 4.45121 4.74966 4.85174 5.09752 5.23215 5.33559 5.36557 5.47511 5.86166 5.91523 6.00014 6.16364 6.17060 6.26870 6.31433 6.48533 6.51224 6.70899 6.76902 7.03777 7.18668 7.57293 7.64644 7.79104 8.24990 8.90576 9.54490 10.07263 10.97195 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.006114 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.167194 B = 4578.477422 C = 5461.453593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.139 3.861 3 N -0.567 5.567 4 C -0.264 4.264 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.881 5.881 8 Si 0.899 3.101 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.287 1.287 12 C 0.191 3.809 13 C 0.084 3.916 14 C -0.233 4.233 15 C -0.153 4.153 16 C 0.085 3.915 17 C -0.150 4.150 18 C 0.105 3.895 19 N -0.490 5.490 20 C 0.217 3.783 21 Cl -0.034 7.034 22 O -0.169 6.169 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.259 0.741 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 0.905 7.366 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.014 3.986 3 N -0.285 5.285 4 C -0.393 4.393 5 H 0.084 0.916 6 C -0.185 4.185 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.214 1.214 12 C 0.063 3.937 13 C 0.032 3.968 14 C -0.254 4.254 15 C -0.158 4.158 16 C 0.029 3.971 17 C -0.170 4.170 18 C -0.046 4.046 19 N -0.204 5.204 20 C 0.048 3.952 21 Cl -0.006 7.006 22 O -0.067 6.067 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.174 0.826 32 H 0.164 0.836 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.493 1.094 7.681 11.503 hybrid contribution 0.282 0.587 -0.942 1.145 sum -8.211 1.681 6.738 10.754 Atomic orbital electron populations 1.22378 0.99567 0.99456 1.01813 1.20964 0.91984 0.86153 0.99499 1.43852 1.74716 1.08271 1.01618 1.19109 1.08109 1.19442 0.92599 0.91580 1.25115 0.93959 1.01023 0.98419 1.69931 1.04583 1.35712 1.42018 0.86287 0.77919 0.82187 0.80825 1.19946 1.21064 1.21357 1.20114 0.90291 0.96508 0.86829 1.25405 0.99768 0.79626 0.92014 1.22000 0.96142 1.00116 1.07184 1.20477 0.97483 0.96565 1.01232 1.19824 0.88502 0.95032 0.93765 1.21036 0.95626 0.96873 1.03509 1.22199 0.94093 0.95473 0.92879 1.66981 1.31886 0.98845 1.22650 1.20856 0.90619 0.89506 0.94238 1.98377 1.90728 1.38066 1.73397 1.84198 1.34400 1.30090 1.57964 0.93093 0.93257 0.94162 0.92966 0.94134 0.93057 0.86176 0.90875 0.82604 0.83618 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.21 37.16 0.38 -2.70 16 2 C 0.14 2.72 6.44 -4.04 -0.03 2.69 16 3 N -0.57 -13.04 2.44 -174.61 -0.43 -13.47 16 4 C -0.26 -6.79 9.48 -15.06 -0.14 -6.94 16 5 H 0.07 1.73 7.93 -52.49 -0.42 1.32 16 6 C 0.02 0.41 4.95 -17.43 -0.09 0.33 16 7 N -0.88 -23.59 11.32 55.49 0.63 -22.96 16 8 Si 0.90 20.82 29.61 -169.99 -5.03 15.78 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 12 C 0.19 4.11 5.83 -5.19 -0.03 4.08 16 13 C 0.08 1.70 6.78 -35.79 -0.24 1.46 16 14 C -0.23 -4.19 9.30 -37.68 -0.35 -4.54 16 15 C -0.15 -2.75 6.25 -105.16 -0.66 -3.41 16 16 C 0.09 1.56 7.49 -38.26 -0.29 1.28 16 17 C -0.15 -2.20 10.13 -39.39 -0.40 -2.60 16 18 C 0.10 1.40 11.14 -17.54 -0.20 1.21 16 19 N -0.49 -7.78 10.33 -10.18 -0.11 -7.89 16 20 C 0.22 3.63 7.32 -17.15 -0.13 3.50 16 21 Cl -0.03 -0.50 29.10 -51.86 -1.51 -2.01 16 22 O -0.17 -3.57 10.57 4.85 0.05 -3.52 16 23 H 0.05 0.92 6.34 -51.93 -0.33 0.59 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 27 H 0.04 0.71 7.83 -51.93 -0.41 0.30 16 28 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.12 2.95 5.32 -51.92 -0.28 2.67 16 30 H 0.07 1.40 7.86 -51.93 -0.41 0.99 16 31 H 0.16 2.50 8.05 -52.48 -0.42 2.07 16 32 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 302.13 15.07 4.55 4.55 Total: -1.00 -27.95 302.13 -7.51 -35.46 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -3.50 Total: -0.31 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.16 Total: -5.64 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.10 Total: -44.32 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: 0.05 Total: -3.52 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.51 Total: -2.01 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.95 -7.51 -35.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876632213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.102 kcal (2) G-P(sol) polarization free energy of solvation -27.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds