Wall clock time and date at job start Tue Mar 31 2020 01:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47130 * 272.51948 * 3 2 1 5 5 N 1.46904 * 109.47104 * 179.72413 * 4 3 2 6 6 C 1.46897 * 111.00093 * 297.91162 * 5 4 3 7 7 C 1.50701 * 109.47047 * 293.08599 * 6 5 4 8 8 H 1.08005 * 120.00029 * 354.97490 * 7 6 5 9 9 C 1.37878 * 119.99933 * 174.97907 * 7 6 5 10 10 N 1.31512 * 120.00103 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99725 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47309 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47192 * 120.00371 * 11 9 7 14 14 H 1.48510 * 109.46792 * 239.99765 * 11 9 7 15 15 C 1.46906 * 110.99869 * 61.86568 * 5 4 3 16 16 C 1.50698 * 109.46954 * 66.04508 * 15 5 4 17 17 C 1.38644 * 120.05821 * 94.98167 * 16 15 5 18 18 C 1.38825 * 117.98008 * 180.02562 * 17 16 15 19 19 C 1.38771 * 117.95466 * 359.97438 * 18 17 16 20 20 Cl 1.73600 * 120.08876 * 180.02562 * 19 18 17 21 21 N 1.32028 * 119.81693 * 359.97438 * 19 18 17 22 22 N 1.28343 * 122.16590 * 0.02562 * 21 19 18 23 23 H 1.09005 * 109.47048 * 152.51875 * 3 2 1 24 24 H 1.09004 * 109.47251 * 32.52182 * 3 2 1 25 25 H 1.09000 * 109.47247 * 59.72435 * 4 3 2 26 26 H 1.09003 * 109.47056 * 299.72202 * 4 3 2 27 27 H 1.09001 * 109.46941 * 53.08080 * 6 5 4 28 28 H 1.09000 * 109.47359 * 173.08816 * 6 5 4 29 29 H 0.97006 * 119.99889 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.47016 * 306.04388 * 15 5 4 31 31 H 1.09002 * 109.46601 * 186.04665 * 15 5 4 32 32 H 1.07995 * 121.01501 * 359.97438 * 17 16 15 33 33 H 1.08002 * 121.02157 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1180 -0.0625 1.4411 5 7 4.5870 -0.0685 1.4408 6 6 5.1085 -1.2542 0.7480 7 6 4.7635 -2.4901 1.5384 8 1 4.2840 -2.3986 2.5018 9 6 5.0600 -3.7376 1.0316 10 7 5.6444 -3.8490 -0.1413 11 14 4.6330 -5.2695 2.0117 12 1 3.9880 -4.8755 3.2899 13 1 3.6995 -6.1157 1.2258 14 1 5.8728 -6.0350 2.2987 15 6 5.1184 1.1651 0.8458 16 6 4.7648 2.3385 1.7227 17 6 5.6699 2.7970 2.6675 18 6 5.2993 3.8804 3.4525 19 6 4.0459 4.4376 3.2423 20 17 3.5262 5.7945 4.1923 21 7 3.2502 3.9336 2.3171 22 7 3.5940 2.9319 1.5920 23 1 2.9709 0.9126 -0.4742 24 1 2.9717 -0.8657 -0.5525 25 1 2.7510 -0.9720 1.9169 26 1 2.7583 0.8064 1.9922 27 1 4.6619 -1.3211 -0.2441 28 1 6.1914 -1.1734 0.6544 29 1 5.8526 -4.7268 -0.4980 30 1 4.6844 1.3073 -0.1439 31 1 6.2023 1.0893 0.7598 32 1 6.6336 2.3252 2.7898 33 1 5.9661 4.2774 4.2037 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877139667.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:04 Heat of formation + Delta-G solvation = 66.695953 kcal Electronic energy + Delta-G solvation = -18913.049926 eV Core-core repulsion = 15806.922076 eV Total energy + Delta-G solvation = -3106.127851 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.14871 -39.31135 -37.89358 -37.34792 -34.87758 -34.32279 -33.56993 -31.72540 -29.38052 -27.21724 -25.73096 -25.43233 -23.91144 -21.44993 -19.10118 -18.58085 -18.24579 -18.18003 -17.05787 -16.72527 -16.34831 -15.97514 -15.63449 -15.20361 -14.97822 -14.64938 -14.32732 -13.99539 -13.59462 -13.45028 -13.24478 -13.08150 -12.93741 -12.72172 -12.68006 -12.47833 -12.45124 -12.14985 -11.86264 -11.56339 -11.26327 -11.14580 -10.68621 -10.60805 -10.48021 -8.99914 -8.11440 -6.16605 -0.29090 -0.22991 0.58082 1.44166 1.49176 1.57880 1.76368 1.81487 2.32400 2.48508 2.99509 3.05622 3.24198 3.42628 3.55992 3.65161 3.79016 4.01646 4.17183 4.23845 4.49221 4.50768 4.63020 4.76180 4.90804 5.01843 5.10449 5.20963 5.40666 5.43992 5.75986 6.14137 6.26343 6.58409 6.63434 6.98820 7.52017 7.53404 8.98112 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.004369 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.546393 B = 6407.011327 C = 7136.275915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.245 3.755 3 C -0.057 4.057 4 C 0.079 3.921 5 N -0.524 5.524 6 C 0.199 3.801 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.015 3.985 10 N -0.925 5.925 11 Si 0.945 3.055 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.281 1.281 15 C 0.094 3.906 16 C 0.081 3.919 17 C -0.077 4.077 18 C -0.096 4.096 19 C 0.097 3.903 20 Cl -0.007 7.007 21 N -0.269 5.269 22 N -0.245 5.245 23 H 0.126 0.874 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.001 0.999 28 H 0.024 0.976 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.193 0.807 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 16.196 5.863 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.072 4.072 3 C -0.098 4.098 4 C -0.052 4.052 5 N -0.247 5.247 6 C 0.074 3.926 7 C -0.553 4.553 8 H 0.075 0.925 9 C -0.184 4.184 10 N -0.566 5.566 11 Si 0.772 3.228 12 H -0.194 1.194 13 H -0.214 1.214 14 H -0.207 1.207 15 C -0.035 4.035 16 C -0.064 4.064 17 C -0.106 4.106 18 C -0.125 4.125 19 C -0.075 4.075 20 Cl 0.021 6.979 21 N -0.112 5.112 22 N -0.088 5.088 23 H 0.144 0.856 24 H 0.131 0.869 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.018 0.982 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.211 0.789 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.994 16.244 5.544 17.280 hybrid contribution 1.015 -0.975 0.276 1.434 sum 3.008 15.270 5.820 16.616 Atomic orbital electron populations 1.81128 1.14268 1.11390 1.10677 1.29400 0.95367 0.91003 0.91429 1.20108 0.80604 1.06366 1.02772 1.21903 0.88441 1.02010 0.92827 1.62305 1.05755 1.01801 1.54867 1.19591 0.94919 0.85862 0.92232 1.21444 1.38337 0.91078 1.04403 0.92476 1.25548 0.95503 1.01531 0.95780 1.70014 1.43361 1.24485 1.18725 0.85696 0.77757 0.80247 0.79083 1.19437 1.21366 1.20709 1.21154 1.02417 0.85411 0.94494 1.23094 0.91189 0.96211 0.95949 1.22751 1.02379 0.93833 0.91605 1.22627 0.94682 0.95000 1.00210 1.23742 0.93956 0.94070 0.95773 1.98416 1.91401 1.40241 1.67811 1.72826 1.29026 1.05916 1.03399 1.73017 1.16036 1.02207 1.17512 0.85583 0.86906 0.91360 0.91175 0.98161 0.95825 0.92920 0.91591 0.86496 0.78943 0.78679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -19.23 18.54 20.00 0.37 -18.86 16 2 C 0.24 8.43 15.43 89.44 1.38 9.81 16 3 C -0.06 -1.73 5.05 28.79 0.15 -1.59 16 4 C 0.08 2.62 4.85 86.30 0.42 3.04 16 5 N -0.52 -17.44 4.69 -905.34 -4.24 -21.68 16 6 C 0.20 8.34 4.53 85.56 0.39 8.72 16 7 C -0.51 -25.19 8.39 25.60 0.21 -24.97 16 8 H 0.06 2.85 7.37 -2.91 -0.02 2.82 16 9 C 0.02 0.78 5.46 84.66 0.46 1.24 16 10 N -0.93 -49.80 13.29 21.45 0.28 -49.51 16 11 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 15 C 0.09 2.37 5.09 85.56 0.44 2.80 16 16 C 0.08 1.94 5.77 42.64 0.25 2.18 16 17 C -0.08 -1.32 9.85 22.51 0.22 -1.10 16 18 C -0.10 -1.52 10.00 22.54 0.23 -1.29 16 19 C 0.10 2.12 7.37 84.79 0.62 2.75 16 20 Cl -0.01 -0.13 29.14 -2.72 -0.08 -0.20 16 21 N -0.27 -7.66 11.49 -49.87 -0.57 -8.24 16 22 N -0.24 -6.99 9.99 -47.62 -0.48 -7.46 16 23 H 0.13 3.27 6.33 -2.38 -0.02 3.26 16 24 H 0.11 3.70 6.29 -2.38 -0.02 3.68 16 25 H 0.07 2.60 6.97 -2.39 -0.02 2.58 16 26 H 0.07 2.32 6.25 -2.39 -0.01 2.31 16 27 H 0.00 0.03 6.02 -2.39 -0.01 0.02 16 28 H 0.02 1.04 7.91 -2.39 -0.02 1.02 16 29 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16 30 H 0.07 1.59 6.06 -2.39 -0.01 1.57 16 31 H 0.12 2.47 7.83 -2.39 -0.02 2.46 16 32 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -62.37 305.24 3.23 -59.14 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: 1.15 Total: 1.67 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 4.76 Total: 1.59 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -4.64 Total: -105.74 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.08 Total: -0.20 kcal Total: -62.37 3.23 -59.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877139667.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.835 kcal (2) G-P(sol) polarization free energy of solvation -62.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds