Wall clock time and date at job start Tue Mar 31 2020 01:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99539 * 2 1 4 4 H 1.48496 * 109.47487 * 269.99907 * 3 2 1 5 5 H 1.48503 * 109.47440 * 30.00120 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99802 * 3 2 1 7 7 C 1.37873 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99827 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99914 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46748 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46708 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.47184 * 179.97438 * 11 10 9 13 13 C 1.34229 * 117.00153 * 179.97438 * 12 11 10 14 14 O 1.20824 * 120.00227 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00057 * 180.02562 * 13 12 11 16 16 S 1.81394 * 109.47167 * 180.02562 * 15 13 12 17 17 C 1.76199 * 103.00056 * 180.02562 * 16 15 13 18 18 C 1.38975 * 120.07816 * 180.02562 * 17 16 15 19 19 C 1.38086 * 119.91892 * 179.97438 * 18 17 16 20 20 C 1.38310 * 120.07752 * 359.97438 * 19 18 17 21 21 C 1.38301 * 120.16067 * 0.02562 * 20 19 18 22 22 C 1.38081 * 120.08205 * 359.97438 * 21 20 19 23 23 H 0.97002 * 120.00481 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.47222 * 59.99841 * 9 7 2 25 25 H 1.08998 * 109.46571 * 299.99758 * 9 7 2 26 26 H 1.08992 * 109.47572 * 59.99831 * 10 9 7 27 27 H 1.08998 * 109.47204 * 299.99146 * 10 9 7 28 28 H 1.08999 * 109.47858 * 59.99239 * 11 10 9 29 29 H 1.09000 * 109.47021 * 299.99354 * 11 10 9 30 30 H 1.09000 * 109.46878 * 60.00105 * 15 13 12 31 31 H 1.09004 * 109.47053 * 300.00052 * 15 13 12 32 32 H 1.07995 * 120.04427 * 359.69664 * 18 17 16 33 33 H 1.08000 * 119.96089 * 179.97438 * 19 18 17 34 34 H 1.07995 * 119.91521 * 179.97438 * 20 19 18 35 35 H 1.07996 * 119.95950 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.04201 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0018 11 6 1.4805 -4.9870 0.0012 12 8 2.4241 -6.0906 0.0018 13 6 1.9112 -7.3310 0.0019 14 8 0.7133 -7.4894 0.0010 15 6 2.8292 -8.5261 0.0031 16 16 1.8414 -10.0475 0.0021 17 6 3.0654 -11.3149 0.0045 18 6 2.6843 -12.6513 0.0038 19 6 3.6463 -13.6419 0.0051 20 6 4.9878 -13.3053 0.0065 21 6 5.3708 -11.9764 0.0072 22 6 4.4143 -10.9805 0.0059 23 1 -0.4851 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5566 0.8903 26 1 2.8715 -3.6038 0.8922 27 1 2.8727 -3.6046 -0.8878 28 1 0.8547 -5.0450 -0.8894 29 1 0.8530 -5.0447 0.8905 30 1 3.4573 -8.5008 0.8936 31 1 3.4588 -8.5015 -0.8864 32 1 1.6370 -12.9149 0.0068 33 1 3.3508 -14.6807 0.0051 34 1 5.7380 -14.0822 0.0080 35 1 6.4192 -11.7173 0.0087 36 1 4.7141 -9.9430 0.0068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958544.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:14 Heat of formation + Delta-G solvation = -74.885426 kcal Electronic energy + Delta-G solvation = -17735.915077 eV Core-core repulsion = 14696.939096 eV Total energy + Delta-G solvation = -3038.975982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34733 -39.26143 -36.64246 -34.05808 -32.05721 -31.63687 -31.31300 -30.34019 -27.01269 -23.59445 -23.11223 -22.90067 -21.12336 -20.38481 -18.38008 -17.63281 -16.73892 -16.61767 -16.50801 -15.88601 -15.31190 -14.93247 -14.75392 -14.49343 -13.82479 -13.80251 -13.62082 -13.13839 -13.12272 -12.22991 -12.12439 -12.01918 -11.81621 -11.53839 -11.00546 -10.74824 -10.70713 -10.53608 -10.49650 -10.48397 -10.13919 -9.78503 -9.55975 -9.37671 -9.20004 -8.41468 -7.72714 -6.06028 -4.09382 0.82590 0.86177 0.98118 1.97990 2.10265 2.74651 3.29319 3.33146 3.35629 3.38892 4.40145 4.45004 4.53062 4.53934 4.61027 4.71088 4.83342 5.00653 5.12564 5.29897 5.34485 5.50301 5.53078 5.59126 5.86896 5.93274 5.98984 6.11647 6.34898 6.47687 6.51138 6.73691 6.92211 7.56561 7.67084 7.69538 7.91807 8.32400 8.96735 9.55069 11.05334 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.051771 B = 0.002296 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.714234 B =12192.980888 C =12702.645508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.351 6.351 13 C 0.476 3.524 14 O -0.492 6.492 15 C -0.127 4.127 16 S -0.033 6.033 17 C -0.098 4.098 18 C -0.099 4.099 19 C -0.101 4.101 20 C -0.128 4.128 21 C -0.099 4.099 22 C -0.137 4.137 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.533 -26.595 0.019 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.004 4.004 12 O -0.268 6.268 13 C 0.317 3.683 14 O -0.379 6.379 15 C -0.276 4.276 16 S 0.211 5.789 17 C -0.211 4.211 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.149 4.149 21 C -0.119 4.119 22 C -0.161 4.161 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.740 -26.410 0.022 27.521 hybrid contribution 1.751 1.086 -0.008 2.061 sum 9.491 -25.324 0.014 27.044 Atomic orbital electron populations 1.69962 1.06084 1.26813 1.50418 1.25035 0.94898 0.99403 0.95173 0.86535 0.79786 0.83187 0.78143 1.20602 1.21174 1.19821 1.21155 0.93113 0.90637 1.51143 0.92417 1.19058 0.93824 0.90686 0.97763 1.21786 0.99998 0.90813 1.02062 1.23621 0.91139 0.83155 1.02503 1.86474 1.42760 1.14567 1.83000 1.22254 0.87699 0.84713 0.73671 1.90722 1.16245 1.86448 1.44503 1.23396 1.01828 0.93087 1.09278 1.86258 1.07244 0.93406 1.91969 1.22089 0.96889 0.97777 1.04345 1.20748 1.00075 0.90439 1.01061 1.21113 0.92854 0.99130 0.98964 1.21207 0.96188 0.96382 1.01086 1.21091 0.99333 0.92782 0.98648 1.21235 0.91654 1.00035 1.03174 0.92852 0.96170 0.96166 0.92047 0.92061 0.91192 0.91187 0.85327 0.85330 0.85350 0.85461 0.85798 0.85601 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.21 5.53 -26.73 -0.15 -2.36 16 11 C 0.07 1.24 5.47 37.16 0.20 1.44 16 12 O -0.35 -5.60 10.22 -39.26 -0.40 -6.00 16 13 C 0.48 6.94 7.98 36.01 0.29 7.23 16 14 O -0.49 -8.65 15.61 -18.75 -0.29 -8.94 16 15 C -0.13 -1.30 4.93 36.01 0.18 -1.12 16 16 S -0.03 -0.37 21.06 -107.50 -2.26 -2.63 16 17 C -0.10 -0.95 6.11 -39.04 -0.24 -1.18 16 18 C -0.10 -0.86 9.79 -39.36 -0.39 -1.24 16 19 C -0.10 -0.72 10.04 -39.61 -0.40 -1.11 16 20 C -0.13 -0.87 10.04 -39.53 -0.40 -1.26 16 21 C -0.10 -0.72 10.04 -39.62 -0.40 -1.11 16 22 C -0.14 -1.15 9.36 -39.37 -0.37 -1.52 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 29 H 0.07 1.27 8.13 -51.93 -0.42 0.84 16 30 H 0.13 1.03 7.75 -51.92 -0.40 0.63 16 31 H 0.13 1.03 7.75 -51.92 -0.40 0.63 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.12 0.86 5.88 -52.49 -0.31 0.56 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -31.92 328.37 -9.39 -41.32 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -4.88 Total: -3.99 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.21 Total: -15.18 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.69 Total: -14.94 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.26 Total: -2.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.92 -9.39 -41.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958544.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.570 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds