Wall clock time and date at job start Tue Mar 31 2020 01:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76195 * 103.00345 * 2 1 4 4 C 1.38996 * 120.08055 * 359.97438 * 3 2 1 5 5 C 1.38057 * 119.92243 * 180.02562 * 4 3 2 6 6 C 1.38326 * 120.08226 * 359.72202 * 5 4 3 7 7 C 1.38283 * 120.15608 * 0.55330 * 6 5 4 8 8 C 1.38106 * 120.08100 * 359.44558 * 7 6 5 9 9 C 1.50694 * 120.04144 * 180.29687 * 8 7 6 10 10 O 1.45199 * 109.47136 * 0.02562 * 9 8 7 11 11 C 1.34235 * 116.99998 * 180.02562 * 10 9 8 12 12 O 1.20827 * 119.99986 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99798 * 179.97438 * 11 10 9 14 14 H 1.09001 * 109.46805 * 60.00010 * 13 11 10 15 15 C 1.52998 * 109.47120 * 299.99754 * 13 11 10 16 16 C 1.50705 * 109.46900 * 179.97438 * 13 11 10 17 17 H 1.07996 * 119.99851 * 0.02562 * 16 13 11 18 18 C 1.37872 * 119.99803 * 179.97438 * 16 13 11 19 19 N 1.31513 * 120.00016 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99888 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47056 * 60.00090 * 20 18 16 22 22 H 1.48501 * 109.47012 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46922 * 299.99812 * 20 18 16 24 24 H 1.09009 * 109.46979 * 299.99944 * 1 2 3 25 25 H 1.08999 * 109.47093 * 59.99499 * 1 2 3 26 26 H 1.08997 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.08009 * 120.03802 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.95671 * 179.97438 * 5 4 3 29 29 H 1.07998 * 119.92334 * 180.28221 * 6 5 4 30 30 H 1.08002 * 119.96168 * 179.72725 * 7 6 5 31 31 H 1.09000 * 109.47521 * 120.00204 * 9 8 7 32 32 H 1.08997 * 109.47294 * 240.00219 * 9 8 7 33 33 H 1.09004 * 109.47288 * 59.99934 * 15 13 11 34 34 H 1.08997 * 109.47054 * 180.02562 * 15 13 11 35 35 H 1.09004 * 109.47284 * 300.00326 * 15 13 11 36 36 H 0.97003 * 119.99917 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 -0.0005 5 6 1.5096 4.0105 -0.0011 6 6 2.8329 4.4131 0.0047 7 6 3.8456 3.4714 -0.0005 8 6 3.5387 2.1249 0.0001 9 6 4.6429 1.0994 0.0012 10 8 5.9291 1.7732 0.0021 11 6 7.0239 0.9965 0.0026 12 8 6.9112 -0.2065 0.0028 13 6 8.3937 1.6251 0.0030 14 1 8.5092 2.2437 0.8929 15 6 8.5568 2.4930 -1.2464 16 6 9.4428 0.5431 0.0042 17 1 9.1472 -0.4956 0.0042 18 6 10.7798 0.8795 0.0042 19 7 11.1397 2.1444 0.0036 20 14 12.0803 -0.4616 0.0049 21 1 11.9224 -1.3048 -1.2072 22 1 13.4300 0.1578 0.0054 23 1 11.9222 -1.3037 1.2178 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.1617 2.3526 -0.0005 28 1 0.7212 4.7487 -0.0019 29 1 3.0759 5.4654 0.0089 30 1 4.8777 3.7893 -0.0003 31 1 4.5591 0.4761 0.8914 32 1 4.5600 0.4752 -0.8885 33 1 7.7980 3.2755 -1.2468 34 1 9.5476 2.9472 -1.2463 35 1 8.4412 1.8743 -2.1363 36 1 12.0804 2.3811 0.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118467514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:15 Heat of formation + Delta-G solvation = -86.092154 kcal Electronic energy + Delta-G solvation = -19008.558104 eV Core-core repulsion = 15969.096163 eV Total energy + Delta-G solvation = -3039.461942 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.49864 -40.08155 -37.54089 -35.94435 -33.41396 -32.50163 -32.27840 -29.69150 -27.80662 -27.27622 -24.95634 -23.83798 -22.48421 -21.50169 -18.79891 -18.63971 -18.00888 -17.70995 -17.39362 -16.81271 -16.12028 -16.00835 -15.43276 -15.27688 -14.96159 -14.69311 -14.60011 -14.37840 -13.79389 -13.48414 -13.38307 -13.32314 -12.98778 -12.78853 -12.62640 -12.51143 -12.31702 -12.11385 -12.03257 -11.90191 -11.16095 -11.11475 -11.08589 -10.72496 -10.54250 -9.83047 -8.48572 -8.20866 -6.34314 0.15699 0.32159 0.50321 1.38520 1.42249 1.44648 1.45517 1.51937 1.78416 2.43316 2.66112 3.09219 3.55541 3.86188 4.03019 4.13049 4.13448 4.26406 4.26652 4.28987 4.43714 4.56250 4.67486 4.70169 4.83901 4.88155 4.97223 4.99588 5.23452 5.28138 5.41762 5.47493 5.59256 5.68818 5.87275 5.92705 6.08921 6.71467 6.98340 7.34427 8.85521 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.003803 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.525531 B = 7361.749940 C = 8217.118531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.172 6.172 3 C -0.088 4.088 4 C -0.132 4.132 5 C -0.095 4.095 6 C -0.122 4.122 7 C -0.098 4.098 8 C -0.094 4.094 9 C 0.108 3.892 10 O -0.353 6.353 11 C 0.472 3.528 12 O -0.542 6.542 13 C 0.053 3.947 14 H 0.054 0.946 15 C -0.120 4.120 16 C -0.543 4.543 17 H 0.055 0.945 18 C 0.025 3.975 19 N -0.908 5.908 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.272 1.272 23 H -0.274 1.274 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.154 0.846 28 H 0.163 0.837 29 H 0.152 0.848 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.986 4.563 -0.439 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.070 5.930 3 C -0.200 4.200 4 C -0.155 4.155 5 C -0.114 4.114 6 C -0.143 4.143 7 C -0.117 4.117 8 C -0.100 4.100 9 C 0.034 3.966 10 O -0.271 6.271 11 C 0.317 3.683 12 O -0.431 6.431 13 C 0.034 3.966 14 H 0.071 0.929 15 C -0.178 4.178 16 C -0.580 4.580 17 H 0.073 0.927 18 C -0.176 4.176 19 N -0.546 5.546 20 Si 0.788 3.212 21 H -0.199 1.199 22 H -0.197 1.197 23 H -0.200 1.200 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.142 0.858 27 H 0.172 0.828 28 H 0.180 0.820 29 H 0.170 0.830 30 H 0.146 0.854 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.270 3.240 -0.439 22.509 hybrid contribution 0.200 0.035 0.069 0.214 sum -22.070 3.275 -0.370 22.315 Atomic orbital electron populations 1.23791 0.90510 1.08605 1.06938 1.86034 1.11171 1.03431 1.92318 1.21515 0.95124 0.97357 1.06020 1.21452 0.98527 0.93074 1.02480 1.21509 0.97094 0.95630 0.97196 1.21550 0.92575 1.00527 0.99609 1.21163 1.01050 0.91585 0.97946 1.19217 0.91222 0.94767 1.04754 1.21529 0.79331 0.93543 1.02192 1.86509 1.14807 1.41403 1.84340 1.24998 0.87375 0.86036 0.69859 1.90486 1.87612 1.17856 1.47127 1.18693 0.83147 0.96337 0.98429 0.92870 1.21567 1.03126 0.97860 0.95240 1.21227 0.91036 0.92801 1.52969 0.92653 1.25621 0.99986 0.98001 0.93954 1.69945 1.17757 1.17101 1.49812 0.85529 0.77847 0.79026 0.78777 1.19909 1.19687 1.19961 0.88291 0.88281 0.85824 0.82821 0.81963 0.83007 0.85357 0.91026 0.91013 0.93099 0.90170 0.95374 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.15 113.37 1.04 -0.50 16 2 S -0.17 -4.05 21.46 -56.49 -1.21 -5.26 16 3 C -0.09 -2.21 6.11 22.62 0.14 -2.07 16 4 C -0.13 -2.42 9.36 22.41 0.21 -2.21 16 5 C -0.09 -1.55 10.04 22.25 0.22 -1.33 16 6 C -0.12 -2.46 10.04 22.30 0.22 -2.23 16 7 C -0.10 -2.71 9.38 22.25 0.21 -2.50 16 8 C -0.09 -2.86 5.90 -19.73 -0.12 -2.97 16 9 C 0.11 3.97 4.74 71.23 0.34 4.31 16 10 O -0.35 -14.85 8.59 -51.46 -0.44 -15.29 16 11 C 0.47 23.39 7.25 71.24 0.52 23.91 16 12 O -0.54 -29.41 15.21 21.96 0.33 -29.07 16 13 C 0.05 2.79 2.74 -12.28 -0.03 2.75 16 14 H 0.05 2.89 8.14 -2.39 -0.02 2.87 16 15 C -0.12 -5.76 8.90 71.98 0.64 -5.12 16 16 C -0.54 -31.52 8.38 25.60 0.21 -31.31 16 17 H 0.06 3.38 6.76 -2.91 -0.02 3.36 16 18 C 0.02 1.36 5.30 84.65 0.45 1.81 16 19 N -0.91 -50.78 11.32 21.45 0.24 -50.54 16 20 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 24 H 0.10 0.90 7.75 -2.39 -0.02 0.88 16 25 H 0.10 0.90 7.75 -2.39 -0.02 0.88 16 26 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.15 1.82 5.88 -2.91 -0.02 1.80 16 28 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.13 3.81 6.99 -2.91 -0.02 3.79 16 31 H 0.07 2.72 8.10 -2.39 -0.02 2.70 16 32 H 0.07 2.72 8.10 -2.39 -0.02 2.70 16 33 H 0.05 2.10 8.11 -2.39 -0.02 2.09 16 34 H 0.08 4.12 6.07 -2.39 -0.01 4.11 16 35 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -67.46 319.08 6.08 -61.38 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.08 Total: 9.80 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 4.05 Total: -17.46 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.24 Total: -50.54 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -0.11 Total: -44.37 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -1.21 Total: -5.26 kcal Total: -67.46 6.08 -61.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118467514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.708 kcal (2) G-P(sol) polarization free energy of solvation -67.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds