Wall clock time and date at job start Tue Mar 31 2020 01:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.75881 * 125.20605 * 2 1 4 4 C 1.75883 * 90.97194 * 180.02562 * 3 2 1 5 5 C 1.33391 * 109.59480 * 359.73098 * 4 3 2 6 6 C 1.33395 * 125.19967 * 180.02562 * 2 1 3 7 7 C 1.50697 * 122.54284 * 359.97438 * 6 2 1 8 8 C 1.50694 * 109.47412 * 84.99771 * 7 6 2 9 9 O 1.20829 * 120.00052 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00118 * 180.02562 * 8 7 6 11 11 C 1.45204 * 117.00194 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46758 * 29.99742 * 11 10 8 13 13 C 1.50697 * 109.47323 * 150.00089 * 11 10 8 14 14 H 1.08001 * 120.00051 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99978 * 180.02562 * 13 11 10 16 16 N 1.31510 * 120.00232 * 359.97438 * 15 13 11 17 17 Si 1.86807 * 119.99946 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46923 * 89.99900 * 17 15 13 19 19 H 1.48504 * 109.46947 * 209.99709 * 17 15 13 20 20 H 1.48497 * 109.46828 * 329.99970 * 17 15 13 21 21 C 1.53003 * 109.46851 * 269.99901 * 11 10 8 22 22 C 1.53001 * 117.51964 * 356.28317 * 21 11 10 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 11 24 24 H 1.09000 * 109.46782 * 269.97365 * 1 2 3 25 25 H 1.08996 * 109.47095 * 29.97628 * 1 2 3 26 26 H 1.09005 * 109.47527 * 149.97706 * 1 2 3 27 27 H 1.08007 * 125.20372 * 179.97438 * 4 3 2 28 28 H 1.08002 * 122.54227 * 180.24093 * 5 4 3 29 29 H 1.09001 * 109.46711 * 324.99686 * 7 6 2 30 30 H 1.09004 * 109.46927 * 205.00420 * 7 6 2 31 31 H 0.97001 * 120.00567 * 179.97438 * 16 15 13 32 32 H 1.09002 * 115.54973 * 210.58100 * 21 11 10 33 33 H 1.09001 * 117.49733 * 214.97413 * 22 21 11 34 34 H 1.08995 * 117.49577 * 359.97438 * 22 21 11 35 35 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 36 36 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5209 1.4371 0.0000 4 6 3.9750 0.4476 -0.0008 5 6 3.6379 -0.8430 0.0049 6 6 2.2759 -1.0900 -0.0005 7 6 1.7051 -2.4847 -0.0005 8 6 1.3996 -2.9025 -1.4158 9 8 1.6230 -2.1455 -2.3308 10 8 0.8794 -4.1155 -1.6601 11 6 0.6111 -4.4506 -3.0473 12 1 1.3210 -3.9305 -3.6905 13 6 0.7538 -5.9382 -3.2414 14 1 1.0199 -6.5687 -2.4059 15 6 0.5456 -6.4941 -4.4857 16 7 0.2220 -5.7263 -5.5032 17 14 0.7231 -8.3381 -4.7265 18 1 -0.5862 -8.9968 -4.4874 19 1 1.1703 -8.6151 -6.1152 20 1 1.7262 -8.8680 -3.7683 21 6 -0.8128 -4.0233 -3.4089 22 6 -1.6809 -3.4396 -2.2923 23 6 -1.1280 -2.5262 -3.3881 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 4.9863 0.8270 -0.0015 28 1 4.3720 -1.6352 0.0094 29 1 0.7886 -2.5022 0.5893 30 1 2.4296 -3.1738 0.4335 31 1 0.0759 -6.1173 -6.3788 32 1 -1.3082 -4.6315 -4.1658 33 1 -2.7473 -3.6639 -2.3145 34 1 -1.2377 -3.3604 -1.2997 35 1 -0.3209 -1.8458 -3.1164 36 1 -1.8307 -2.1495 -4.1313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123367098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:58 Heat of formation + Delta-G solvation = -50.479984 kcal Electronic energy + Delta-G solvation = -19916.874433 eV Core-core repulsion = 16878.956751 eV Total energy + Delta-G solvation = -3037.917682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57526 -39.43464 -37.97626 -36.43338 -34.86663 -33.18896 -31.45233 -29.75402 -26.78512 -25.31689 -23.79574 -23.17762 -22.33382 -20.82107 -19.39926 -18.77061 -18.34987 -18.11771 -17.59048 -17.09738 -16.31198 -16.01024 -15.66114 -14.90524 -14.64811 -14.35172 -14.25116 -13.77857 -13.62890 -13.31388 -13.20316 -13.04323 -12.90031 -12.80180 -12.72829 -12.44889 -12.27834 -12.20967 -11.93034 -11.67025 -11.35677 -11.31335 -11.01167 -10.46173 -10.41707 -9.45339 -9.30173 -8.25619 -6.42110 0.06339 0.71541 1.05323 1.41294 1.43063 1.44581 1.53453 1.59285 2.25407 2.51473 3.03245 3.16973 3.76615 3.94089 4.07507 4.09344 4.21905 4.27888 4.31516 4.45669 4.48772 4.60815 4.69917 4.72969 4.77234 4.94335 5.00132 5.09519 5.15377 5.26944 5.31724 5.43873 5.53933 5.57628 5.58757 5.94220 6.16579 6.64313 7.06431 7.29679 8.81666 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.029294 B = 0.004555 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.606320 B = 6145.718792 C = 6598.243647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.170 4.170 3 S 0.105 5.895 4 C -0.218 4.218 5 C -0.135 4.135 6 C -0.115 4.115 7 C -0.048 4.048 8 C 0.448 3.552 9 O -0.538 6.538 10 O -0.359 6.359 11 C 0.257 3.743 12 H 0.003 0.997 13 C -0.545 4.545 14 H 0.068 0.932 15 C 0.019 3.981 16 N -0.914 5.914 17 Si 0.977 3.023 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.146 4.146 22 C -0.164 4.164 23 C -0.198 4.198 24 H 0.101 0.899 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.187 0.813 28 H 0.149 0.851 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.268 0.732 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 10.632 13.570 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.288 4.288 3 S 0.369 5.631 4 C -0.353 4.353 5 C -0.164 4.164 6 C -0.127 4.127 7 C -0.087 4.087 8 C 0.292 3.708 9 O -0.428 6.428 10 O -0.276 6.276 11 C 0.203 3.797 12 H 0.020 0.980 13 C -0.582 4.582 14 H 0.086 0.914 15 C -0.181 4.181 16 N -0.551 5.551 17 Si 0.800 3.200 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.189 1.189 21 C -0.165 4.165 22 C -0.200 4.200 23 C -0.235 4.235 24 H 0.119 0.881 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.205 0.795 28 H 0.166 0.834 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.597 12.415 13.077 18.102 hybrid contribution 0.516 -2.249 -0.996 2.513 sum 2.112 10.166 12.081 15.930 Atomic orbital electron populations 1.20432 0.86969 1.03139 1.03901 1.24576 1.00880 0.95734 1.07575 1.83954 0.96913 1.08909 1.73352 1.25762 1.02756 0.96233 1.10565 1.20208 0.95443 0.97588 1.03199 1.18385 0.93651 0.94116 1.06549 1.20085 1.05230 0.94036 0.89390 1.24281 0.73341 0.79820 0.93377 1.90578 1.50332 1.53688 1.48222 1.86479 1.73001 1.33943 1.34198 1.19664 0.91185 0.94836 0.73999 0.97978 1.21269 1.49468 0.91372 0.96124 0.91427 1.25784 0.93891 1.03701 0.94744 1.70127 1.46529 1.37292 1.01178 0.85270 0.79018 0.78137 0.77529 1.19263 1.20560 1.18879 1.22688 0.97778 0.94583 1.01414 1.22877 0.99321 1.03654 0.94196 1.23089 1.03562 0.94234 1.02613 0.88063 0.90615 0.92045 0.79534 0.83366 0.85059 0.85111 0.92263 0.88328 0.87892 0.88917 0.89586 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.92 9.78 71.23 0.70 -1.22 16 2 C -0.17 -4.40 6.50 24.59 0.16 -4.25 16 3 S 0.10 2.35 23.33 -56.49 -1.32 1.03 16 4 C -0.22 -4.84 11.23 66.72 0.75 -4.09 16 5 C -0.13 -3.41 9.96 21.22 0.21 -3.20 16 6 C -0.12 -3.17 4.30 -20.92 -0.09 -3.26 16 7 C -0.05 -1.33 5.45 29.10 0.16 -1.17 16 8 C 0.45 17.99 6.54 71.23 0.47 18.45 16 9 O -0.54 -25.16 12.98 21.95 0.28 -24.87 16 10 O -0.36 -16.66 8.49 -51.39 -0.44 -17.10 16 11 C 0.26 13.91 2.39 29.85 0.07 13.98 16 12 H 0.00 0.16 7.16 -2.39 -0.02 0.14 16 13 C -0.54 -30.82 8.90 25.60 0.23 -30.59 16 14 H 0.07 3.74 7.81 -2.91 -0.02 3.71 16 15 C 0.02 1.04 5.16 84.65 0.44 1.48 16 16 N -0.91 -52.88 11.66 21.44 0.25 -52.63 16 17 Si 0.98 42.91 29.54 68.60 2.03 44.94 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 C -0.15 -7.29 5.23 -10.79 -0.06 -7.35 16 22 C -0.16 -6.50 9.74 30.59 0.30 -6.20 16 23 C -0.20 -8.57 9.87 30.60 0.30 -8.27 16 24 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.59 7.19 -2.38 -0.02 1.58 16 27 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 28 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.13 2.97 7.51 -2.39 -0.02 2.95 16 30 H 0.13 3.03 8.11 -2.38 -0.02 3.01 16 31 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.10 5.46 6.55 -2.39 -0.02 5.45 16 33 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.09 3.47 6.67 -2.39 -0.02 3.46 16 35 H 0.09 3.92 5.56 -2.39 -0.01 3.91 16 36 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 Total: -1.00 -67.60 315.92 5.53 -62.07 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 1.09 Total: 22.25 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 3.63 Total: -35.68 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.25 Total: -52.63 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.15 Total: -41.97 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.32 Total: 1.03 kcal Total: -67.60 5.53 -62.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123367098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.595 kcal (2) G-P(sol) polarization free energy of solvation -67.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds