Wall clock time and date at job start Tue Mar 31 2020 01:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99899 * 2 1 4 4 H 1.48500 * 109.46841 * 264.85368 * 3 2 1 5 5 H 1.48498 * 109.46925 * 24.85246 * 3 2 1 6 6 H 1.48494 * 109.46803 * 144.85288 * 3 2 1 7 7 C 1.37874 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00742 * 4.83503 * 7 2 1 9 9 C 1.50703 * 119.99406 * 184.84169 * 7 2 1 10 10 H 1.08997 * 109.47891 * 54.73056 * 9 7 2 11 11 O 1.45203 * 109.47294 * 294.72934 * 9 7 2 12 12 C 1.34228 * 117.00195 * 150.00495 * 11 9 7 13 13 O 1.20828 * 119.99836 * 359.97438 * 12 11 9 14 14 C 1.50697 * 119.99752 * 180.02562 * 12 11 9 15 15 C 1.53004 * 109.46884 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47177 * 180.02562 * 15 14 12 17 17 C 1.38433 * 122.53688 * 269.73657 * 16 15 14 18 18 C 1.33385 * 114.91932 * 179.76093 * 17 16 15 19 19 S 1.75888 * 109.59319 * 0.47511 * 18 17 16 20 20 C 1.33386 * 122.54455 * 90.02254 * 16 15 14 21 21 C 1.53000 * 109.46954 * 174.73404 * 9 7 2 22 22 C 1.53004 * 117.49747 * 254.04972 * 21 9 7 23 23 C 1.52999 * 117.49961 * 185.38674 * 21 9 7 24 24 H 0.97000 * 120.00350 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47640 * 299.99680 * 14 12 11 26 26 H 1.08998 * 109.47678 * 59.99940 * 14 12 11 27 27 H 1.09003 * 109.46801 * 299.99473 * 15 14 12 28 28 H 1.08994 * 109.47154 * 60.00019 * 15 14 12 29 29 H 1.07997 * 122.53655 * 359.97438 * 17 16 15 30 30 H 1.08000 * 125.20347 * 180.20163 * 18 17 16 31 31 H 1.08006 * 125.20475 * 0.02562 * 20 16 15 32 32 H 1.09002 * 115.55215 * 39.71592 * 21 9 7 33 33 H 1.08997 * 117.49621 * 359.97438 * 22 21 9 34 34 H 1.08999 * 117.50284 * 145.02150 * 22 21 9 35 35 H 1.09000 * 117.50258 * 214.97572 * 23 21 9 36 36 H 1.08995 * 117.50380 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6053 1.9836 -1.3945 5 1 1.3964 2.6816 0.5884 6 1 3.4880 1.4740 0.8060 7 6 2.0044 -1.1941 0.0005 8 1 1.4675 -2.1277 -0.0779 9 6 3.5074 -1.1962 0.1107 10 1 3.8076 -0.6390 0.9980 11 8 4.0802 -0.5728 -1.0690 12 6 5.2526 0.0621 -0.9144 13 8 5.7826 0.0963 0.1709 14 6 5.9073 0.7333 -2.0942 15 6 7.2217 1.3780 -1.6494 16 6 7.8761 2.0497 -2.8290 17 6 8.7721 1.3946 -3.6562 18 6 9.2557 2.1320 -4.6570 19 16 8.5763 3.7524 -4.5774 20 6 7.6401 3.3222 -3.1520 21 6 4.0087 -2.6377 0.2199 22 6 4.4962 -3.1142 1.5897 23 6 5.5036 -2.8489 0.4679 24 1 -0.4851 0.8400 -0.0004 25 1 6.1091 -0.0075 -2.8678 26 1 5.2425 1.5007 -2.4907 27 1 7.0194 2.1190 -0.8760 28 1 7.8866 0.6109 -1.2527 29 1 9.0554 0.3635 -3.5047 30 1 9.9603 1.7880 -5.3997 31 1 6.9760 3.9870 -2.6194 32 1 3.4959 -3.3629 -0.4120 33 1 4.4603 -2.4006 2.4128 34 1 4.3047 -4.1529 1.8588 35 1 5.9743 -3.7133 -0.0004 36 1 6.1301 -1.9611 0.5528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123462434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:34 Heat of formation + Delta-G solvation = -52.170598 kcal Electronic energy + Delta-G solvation = -19470.317584 eV Core-core repulsion = 16432.326592 eV Total energy + Delta-G solvation = -3037.990993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.49108 -39.38372 -38.29442 -36.78309 -34.87590 -33.93584 -30.77271 -29.98768 -26.74585 -25.08865 -23.63715 -23.21899 -21.80269 -21.05857 -19.65838 -19.25826 -18.78931 -18.26868 -17.67577 -17.08212 -16.57698 -15.92433 -15.61259 -15.47405 -14.74717 -14.50340 -14.24871 -13.93779 -13.74737 -13.46574 -13.29283 -13.16650 -13.00340 -12.82346 -12.73698 -12.35539 -12.11012 -12.00522 -11.84318 -11.64843 -11.38428 -11.28085 -11.05097 -10.93275 -10.75463 -9.71354 -9.28736 -8.52015 -6.63144 0.09178 0.77233 1.08199 1.19325 1.22692 1.29216 1.39800 1.68317 2.04007 2.18991 2.99200 3.01643 3.79487 3.87992 3.93144 4.05910 4.07793 4.18766 4.19451 4.26534 4.46038 4.57679 4.64180 4.66550 4.75618 4.81666 4.84883 4.98774 5.06514 5.15974 5.26915 5.32539 5.34625 5.49724 5.57862 5.89813 6.12987 6.47423 7.00069 7.09166 8.61482 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.004783 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.733088 B = 5852.051948 C = 6894.979583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.042 3.958 3 Si 0.926 3.074 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.215 3.785 10 H 0.032 0.968 11 O -0.368 6.368 12 C 0.439 3.561 13 O -0.542 6.542 14 C -0.110 4.110 15 C -0.040 4.040 16 C -0.106 4.106 17 C -0.142 4.142 18 C -0.208 4.208 19 S 0.099 5.901 20 C -0.225 4.225 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.177 4.177 24 H 0.275 0.725 25 H 0.126 0.874 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.189 0.811 31 H 0.168 0.832 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.226 4.514 -8.712 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.750 3.250 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.163 3.837 10 H 0.049 0.951 11 O -0.285 6.285 12 C 0.285 3.715 13 O -0.434 6.434 14 C -0.148 4.148 15 C -0.080 4.080 16 C -0.119 4.119 17 C -0.171 4.171 18 C -0.343 4.343 19 S 0.363 5.637 20 C -0.360 4.360 21 C -0.188 4.188 22 C -0.198 4.198 23 C -0.214 4.214 24 H 0.084 0.916 25 H 0.144 0.856 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.173 0.827 30 H 0.206 0.794 31 H 0.186 0.814 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.352 5.929 -9.269 22.261 hybrid contribution -0.594 -0.564 1.114 1.383 sum 18.758 5.365 -8.155 21.146 Atomic orbital electron populations 1.69981 1.07704 1.28896 1.48781 1.25756 0.95412 1.02609 0.92314 0.86081 0.79197 0.79563 0.80119 1.17679 1.20583 1.19107 1.21168 0.88990 0.94307 1.51308 0.92294 1.20359 0.91170 0.89118 0.83087 0.95065 1.86863 1.34350 1.63046 1.44217 1.24414 0.79982 0.76071 0.91066 1.90516 1.64269 1.59191 1.29375 1.21536 0.97016 1.01509 0.94699 1.19996 0.93758 0.99744 0.94485 1.18918 1.00021 0.93994 0.98976 1.20303 0.98892 1.02398 0.95551 1.25930 1.07260 0.96517 1.04595 1.84196 1.40387 1.13181 1.25960 1.25741 1.07344 1.00128 1.02812 1.22488 0.97405 0.97218 1.01709 1.22931 1.03038 1.02510 0.91291 1.23180 0.91409 1.03796 1.02986 0.91552 0.85640 0.87897 0.91276 0.89638 0.82692 0.79396 0.81425 0.88228 0.89960 0.86548 0.86904 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.64 13.96 21.45 0.30 -55.34 16 2 C 0.04 2.44 5.47 84.65 0.46 2.91 16 3 Si 0.93 45.57 25.56 68.60 1.75 47.33 16 4 H -0.25 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -13.30 6.42 99.48 0.64 -12.66 16 7 C -0.52 -30.11 9.35 25.60 0.24 -29.88 16 8 H 0.06 3.66 7.99 -2.92 -0.02 3.63 16 9 C 0.21 10.67 1.53 29.85 0.05 10.71 16 10 H 0.03 1.67 5.90 -2.39 -0.01 1.66 16 11 O -0.37 -17.05 8.18 -51.40 -0.42 -17.47 16 12 C 0.44 17.41 6.33 71.23 0.45 17.86 16 13 O -0.54 -23.23 12.93 21.96 0.28 -22.95 16 14 C -0.11 -3.16 5.79 29.85 0.17 -2.98 16 15 C -0.04 -1.00 4.76 29.85 0.14 -0.85 16 16 C -0.11 -2.29 5.06 -20.92 -0.11 -2.40 16 17 C -0.14 -2.57 9.98 21.22 0.21 -2.36 16 18 C -0.21 -3.26 11.23 66.72 0.75 -2.51 16 19 S 0.10 1.69 23.34 -56.49 -1.32 0.37 16 20 C -0.22 -4.62 10.98 66.72 0.73 -3.89 16 21 C -0.17 -7.12 5.29 -10.79 -0.06 -7.17 16 22 C -0.16 -5.69 10.18 30.62 0.31 -5.38 16 23 C -0.18 -6.12 9.82 30.62 0.30 -5.82 16 24 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 26 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 28 H 0.09 2.08 8.09 -2.39 -0.02 2.06 16 29 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 30 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 31 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.10 4.16 8.14 -2.39 -0.02 4.14 16 33 H 0.08 3.05 8.08 -2.39 -0.02 3.03 16 34 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.09 3.43 5.58 -2.39 -0.01 3.42 16 Total: -1.00 -66.95 317.28 5.26 -61.69 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.01 Total: 18.13 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 3.66 Total: -31.75 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.30 Total: -55.34 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.14 Total: -40.42 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.75 Total: 47.33 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.32 Total: 0.37 kcal Total: -66.95 5.26 -61.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123462434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.517 kcal (2) G-P(sol) polarization free energy of solvation -66.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds