Wall clock time and date at job start Tue Mar 31 2020 02:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99894 * 2 1 4 4 C 1.50705 * 109.46789 * 66.04705 * 3 2 1 5 5 H 1.07991 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99736 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00093 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00142 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47004 * 60.00104 * 8 6 4 10 10 H 1.48492 * 109.47381 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46847 * 300.00327 * 8 6 4 12 12 C 1.46907 * 111.00121 * 236.04736 * 2 1 3 13 13 C 1.50695 * 109.46817 * 293.95408 * 12 2 1 14 14 C 1.35405 * 126.38476 * 95.00717 * 13 12 2 15 15 N 1.33350 * 108.60059 * 179.97438 * 14 13 12 16 16 C 1.32553 * 109.07943 * 359.97438 * 15 14 13 17 17 C 1.40772 * 132.77755 * 179.97438 * 16 15 14 18 18 C 1.36132 * 119.15690 * 180.02562 * 17 16 15 19 19 C 1.40175 * 120.13993 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.54596 * 179.97438 * 19 18 17 21 21 N 1.30753 * 120.90297 * 0.26235 * 19 18 17 22 22 N 1.36250 * 126.39027 * 274.99701 * 13 12 2 23 23 H 1.08996 * 109.47045 * 183.94675 * 1 2 3 24 24 H 1.08992 * 109.47147 * 303.95443 * 1 2 3 25 25 H 1.09001 * 109.46702 * 63.95569 * 1 2 3 26 26 H 1.09001 * 109.46753 * 186.04470 * 3 2 1 27 27 H 1.08997 * 109.47212 * 306.04566 * 3 2 1 28 28 H 0.96996 * 119.99864 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46583 * 173.95177 * 12 2 1 30 30 H 1.08996 * 109.46763 * 53.95478 * 12 2 1 31 31 H 1.07997 * 125.69952 * 0.03587 * 14 13 12 32 32 H 1.08000 * 120.42234 * 359.97438 * 17 16 15 33 33 H 1.07996 * 119.93266 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 1 1.0739 1.5115 2.0484 6 6 2.0276 3.3491 1.5290 7 7 2.7136 4.0012 0.6158 8 14 1.5826 4.1869 3.1382 9 1 2.1733 3.4292 4.2706 10 1 2.1158 5.5727 3.1388 11 1 0.1053 4.2243 3.2847 12 6 1.9955 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9729 14 6 0.5635 -2.8486 -1.5081 15 7 0.5914 -4.1291 -1.1370 16 6 1.6574 -4.3369 -0.3770 17 6 2.1614 -5.4805 0.2710 18 6 3.3072 -5.3794 0.9990 19 6 3.9722 -4.1493 1.0977 20 17 5.4318 -4.0377 2.0308 21 7 3.5050 -3.0836 0.5013 22 7 2.3325 -3.1484 -0.2577 23 1 -0.3633 -1.0252 0.0707 24 1 -0.3633 0.5739 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0797 1.3444 -0.1082 27 1 1.5611 1.9274 -0.8309 28 1 2.9881 4.9173 0.7779 29 1 3.0797 -0.6610 -1.1756 30 1 1.5611 -0.3872 -2.0628 31 1 -0.1889 -2.3896 -2.1323 32 1 1.6452 -6.4258 0.1922 33 1 3.7048 -6.2486 1.5016 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142981736.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:23 Heat of formation + Delta-G solvation = 127.511454 kcal Electronic energy + Delta-G solvation = -19056.867407 eV Core-core repulsion = 15953.376714 eV Total energy + Delta-G solvation = -3103.490693 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.60699 -38.48272 -36.94240 -36.47121 -33.83852 -32.58777 -31.03438 -30.20833 -27.22867 -26.72827 -24.81338 -23.77654 -22.72916 -21.18270 -20.36134 -18.05535 -17.71647 -16.51597 -16.30772 -16.20952 -14.88480 -14.47365 -14.18900 -14.04306 -13.91991 -13.76989 -13.49744 -13.37718 -12.45567 -11.94703 -11.88818 -11.63511 -11.59642 -11.29376 -11.09679 -10.92932 -10.85645 -10.67311 -10.48852 -10.04100 -9.84507 -9.32567 -9.27744 -8.44974 -8.15376 -7.31188 -6.03462 -4.04714 0.20448 0.82692 1.02608 2.34107 2.63758 3.16721 3.33495 3.37309 3.40700 3.90982 4.04417 4.33964 4.42529 4.84833 4.95586 5.16908 5.21823 5.32660 5.39038 5.44934 5.54671 5.83941 6.05114 6.14223 6.21186 6.35159 6.48357 6.73028 7.23099 7.27659 7.34611 7.65437 7.76240 8.03699 8.14645 8.49489 9.01792 9.59216 11.07393 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.004917 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.901606 B = 5693.429299 C = 6828.948512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.535 5.535 3 C 0.195 3.805 4 C -0.507 4.507 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.121 3.879 13 C 0.053 3.947 14 C 0.016 3.984 15 N -0.451 5.451 16 C 0.142 3.858 17 C 0.015 3.985 18 C -0.179 4.179 19 C 0.196 3.804 20 Cl 0.020 6.980 21 N -0.232 5.232 22 N -0.248 5.248 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.015 0.985 26 H 0.031 0.969 27 H -0.006 1.006 28 H 0.262 0.738 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.190 0.810 32 H 0.168 0.832 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 -19.351 -1.671 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.260 5.260 3 C 0.071 3.929 4 C -0.545 4.545 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.008 4.008 13 C -0.067 4.067 14 C -0.139 4.139 15 N -0.172 5.172 16 C -0.103 4.103 17 C -0.012 4.012 18 C -0.206 4.206 19 C -0.004 4.004 20 Cl 0.047 6.953 21 N -0.045 5.045 22 N -0.022 5.022 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.034 0.966 26 H 0.049 0.951 27 H 0.012 0.988 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.207 0.793 32 H 0.185 0.815 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.478 -18.956 -1.492 19.072 hybrid contribution 0.068 0.827 0.564 1.003 sum 1.546 -18.129 -0.928 18.218 Atomic orbital electron populations 1.22271 0.88553 0.99707 1.00837 1.62132 1.07281 1.17969 1.38641 1.19748 0.95475 0.80826 0.96889 1.21079 1.34944 0.96892 1.01627 0.92002 1.24967 0.95248 0.97287 0.96981 1.69945 1.38231 1.11526 1.34107 0.86555 0.78700 0.78332 0.83800 1.20205 1.21300 1.20260 1.20533 1.01356 0.84663 0.94238 1.21464 0.94046 0.93150 0.98017 1.22430 0.98072 0.89563 1.03878 1.70610 1.16299 1.17510 1.12765 1.21124 0.94641 0.88437 1.06058 1.20465 0.93269 0.96641 0.90839 1.21233 0.97250 0.97623 1.04459 1.22745 0.91663 0.91331 0.94688 1.98461 1.30166 1.98322 1.68309 1.75373 0.98165 1.23916 1.07050 1.46340 1.14664 1.09809 1.31355 0.93655 0.90582 0.96612 0.95083 0.98792 0.92841 0.89737 0.92548 0.79340 0.81454 0.82048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.14 60.06 0.55 1.24 16 2 N -0.54 -11.78 4.74 -245.83 -1.17 -12.95 16 3 C 0.20 5.10 4.72 -4.97 -0.02 5.07 16 4 C -0.51 -14.36 8.46 -34.44 -0.29 -14.66 16 5 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 6 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 7 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.12 2.24 5.52 -4.97 -0.03 2.21 16 13 C 0.05 0.90 5.94 -81.64 -0.49 0.41 16 14 C 0.02 0.23 10.75 -17.90 -0.19 0.04 16 15 N -0.45 -7.02 11.32 -12.76 -0.14 -7.16 16 16 C 0.14 2.12 7.89 -155.99 -1.23 0.89 16 17 C 0.02 0.16 10.11 -39.38 -0.40 -0.24 16 18 C -0.18 -1.72 9.81 -39.61 -0.39 -2.10 16 19 C 0.20 2.52 7.38 -17.28 -0.13 2.39 16 20 Cl 0.02 0.22 29.11 -51.86 -1.51 -1.29 16 21 N -0.23 -3.90 11.90 32.96 0.39 -3.51 16 22 N -0.25 -4.23 4.02 -8.40 -0.03 -4.27 16 23 H 0.04 0.80 6.55 -51.93 -0.34 0.46 16 24 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.03 0.87 7.93 -51.93 -0.41 0.46 16 27 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.08 1.62 7.93 -51.93 -0.41 1.21 16 30 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 31 H 0.19 2.27 8.06 -52.49 -0.42 1.84 16 32 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -32.88 303.57 -8.44 -41.32 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -3.56 Total: -4.33 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.71 Total: -3.23 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.22 Total: -53.87 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.51 Total: -1.29 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.88 -8.44 -41.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142981736.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.832 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds