Wall clock time and date at job start Tue Mar 31 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47128 * 269.99781 * 3 2 1 5 5 H 1.48502 * 109.47374 * 29.99986 * 3 2 1 6 6 H 1.48495 * 109.47264 * 150.00018 * 3 2 1 7 7 C 1.37877 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99781 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00014 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47135 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47108 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47092 * 179.97438 * 11 10 9 13 13 C 1.38564 * 119.99982 * 179.97438 * 12 11 10 14 14 N 1.32951 * 120.69066 * 0.02562 * 13 12 11 15 15 C 1.32225 * 121.33183 * 179.97438 * 14 13 12 16 16 Cl 1.73599 * 118.83282 * 179.97438 * 15 14 13 17 17 N 1.31622 * 122.32797 * 0.26289 * 15 14 13 18 18 C 1.33579 * 120.41593 * 359.47622 * 17 15 14 19 19 C 1.45915 * 134.87187 * 180.16637 * 18 17 15 20 20 C 1.34614 * 107.05249 * 180.30760 * 19 18 17 21 21 N 1.36402 * 109.88492 * 359.97438 * 20 19 18 22 22 H 0.97001 * 125.10622 * 179.97438 * 21 20 19 23 23 C 1.37595 * 109.78948 * 0.02562 * 21 20 19 24 24 H 0.96998 * 119.99700 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.47167 * 59.99591 * 9 7 2 26 26 H 1.08999 * 109.46769 * 299.99707 * 9 7 2 27 27 H 1.09006 * 109.47424 * 59.99633 * 10 9 7 28 28 H 1.08999 * 109.47079 * 299.99549 * 10 9 7 29 29 H 1.09005 * 109.47436 * 60.00020 * 11 10 9 30 30 H 1.08999 * 109.47063 * 299.99903 * 11 10 9 31 31 H 0.96997 * 120.00143 * 0.02562 * 12 11 10 32 32 H 1.08004 * 126.47083 * 0.32964 * 19 18 17 33 33 H 1.08003 * 125.06262 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5515 -2.6366 0.0022 12 7 6.0398 -4.0178 0.0040 13 6 7.4021 -4.2710 0.0037 14 7 8.2782 -3.2709 0.0024 15 6 9.5808 -3.4980 0.0026 16 17 10.6667 -2.1435 0.0002 17 7 10.0833 -4.7145 -0.0009 18 6 9.2767 -5.7793 0.0055 19 6 9.4794 -7.2243 0.0073 20 6 8.2598 -7.7940 0.0081 21 7 7.2966 -6.8282 0.0075 22 1 6.3408 -6.9936 0.0076 23 6 7.8843 -5.5841 0.0058 24 1 -0.4849 0.8401 -0.0004 25 1 3.8745 -0.6800 0.8910 26 1 3.8752 -0.6805 -0.8889 27 1 3.6585 -3.1511 -0.8875 28 1 3.6580 -3.1497 0.8925 29 1 5.9150 -2.1220 0.8918 30 1 5.9148 -2.1235 -0.8882 31 1 5.4095 -4.7550 0.0045 32 1 10.4287 -7.7394 0.0082 33 1 8.0718 -8.8576 0.0098 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157638167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:28 Heat of formation + Delta-G solvation = 68.908893 kcal Electronic energy + Delta-G solvation = -18377.151503 eV Core-core repulsion = 15271.119612 eV Total energy + Delta-G solvation = -3106.031891 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.03706 -38.94286 -37.18402 -36.46358 -34.20023 -32.66546 -31.47803 -30.44054 -29.66036 -26.98535 -24.00474 -23.69968 -22.30665 -20.93217 -20.49846 -19.18467 -17.85935 -17.03995 -16.83173 -15.93334 -15.58778 -15.23537 -14.85715 -14.57807 -14.01440 -13.79954 -13.47682 -13.02546 -12.82096 -12.71014 -12.00854 -11.61319 -11.41967 -11.39521 -11.29070 -11.11985 -10.87413 -10.14403 -9.95588 -9.77481 -9.41085 -9.29178 -9.23278 -8.91563 -8.60148 -7.78175 -6.11091 -4.10393 0.86031 1.01982 1.46362 2.35539 2.64463 2.96624 3.28496 3.36387 3.40325 3.75173 3.95463 4.39702 4.40490 4.44952 4.71201 5.07950 5.23061 5.24296 5.42547 5.56858 5.84876 5.91489 6.01003 6.27135 6.35052 6.41419 6.62759 6.71602 6.96133 6.99558 7.15692 7.29267 7.42948 7.70477 8.10097 8.44437 8.91866 9.50976 11.02065 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.003746 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.168196 B = 7472.853275 C = 8819.272095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.115 4.115 11 C 0.122 3.878 12 N -0.701 5.701 13 C 0.482 3.518 14 N -0.560 5.560 15 C 0.393 3.607 16 Cl 0.015 6.985 17 N -0.520 5.520 18 C 0.159 3.841 19 C -0.199 4.199 20 C 0.085 3.915 21 N -0.567 5.567 22 H 0.420 0.580 23 C -0.073 4.073 24 H 0.264 0.736 25 H 0.020 0.980 26 H 0.015 0.985 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.407 0.593 32 H 0.158 0.842 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.156 -15.407 0.051 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.153 4.153 11 C -0.001 4.001 12 N -0.333 5.333 13 C 0.229 3.771 14 N -0.291 5.291 15 C 0.096 3.904 16 Cl 0.043 6.957 17 N -0.243 5.243 18 C 0.024 3.976 19 C -0.226 4.226 20 C -0.047 4.047 21 N -0.170 5.170 22 H 0.257 0.743 23 C -0.188 4.188 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.243 0.757 32 H 0.176 0.824 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 18.574 -14.266 0.048 23.420 hybrid contribution -0.862 0.068 -0.021 0.865 sum 17.712 -14.198 0.027 22.700 Atomic orbital electron populations 1.69911 1.06346 1.27038 1.50837 1.25027 0.94755 0.99286 0.94367 0.86773 0.80430 0.83449 0.78657 1.20186 1.21327 1.18810 1.21074 0.89270 0.94493 1.51365 0.91101 1.19482 0.97270 0.91189 0.96799 1.21729 0.90582 1.01341 1.01608 1.21754 0.95864 0.79962 1.02506 1.44866 1.01091 1.10336 1.76991 1.17471 0.86396 0.84543 0.88710 1.67360 1.01994 1.33073 1.26716 1.22130 0.85488 0.87386 0.95422 1.98409 1.60686 1.40258 1.96337 1.67285 1.39307 0.96577 1.21149 1.19762 0.86367 0.93373 0.98067 1.21411 0.98084 0.88810 1.14255 1.22054 0.87261 0.94518 1.00904 1.41394 1.09045 1.03320 1.63263 0.74280 1.19211 0.95870 0.86737 1.16989 0.92642 0.96195 0.96624 0.92205 0.92172 0.91306 0.91310 0.75676 0.82398 0.79926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.81 16 7 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 8 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 9 C -0.01 -0.21 4.04 -27.88 -0.11 -0.33 16 10 C -0.11 -2.03 5.27 -26.73 -0.14 -2.17 16 11 C 0.12 1.88 5.74 -4.05 -0.02 1.85 16 12 N -0.70 -8.97 5.70 -60.20 -0.34 -9.32 16 13 C 0.48 6.78 7.54 -154.69 -1.17 5.61 16 14 N -0.56 -8.95 9.65 -10.80 -0.10 -9.06 16 15 C 0.39 6.11 8.17 -91.93 -0.75 5.36 16 16 Cl 0.02 0.21 29.26 -51.86 -1.52 -1.31 16 17 N -0.52 -7.95 10.46 -8.56 -0.09 -8.03 16 18 C 0.16 2.12 7.57 -83.14 -0.63 1.49 16 19 C -0.20 -1.83 11.07 -37.79 -0.42 -2.24 16 20 C 0.09 0.54 11.82 -16.80 -0.20 0.34 16 21 N -0.57 -4.37 6.05 -10.52 -0.06 -4.44 16 22 H 0.42 2.00 8.96 -40.82 -0.37 1.63 16 23 C -0.07 -0.89 7.21 -83.77 -0.60 -1.49 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 26 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.41 4.09 8.49 -40.82 -0.35 3.74 16 32 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 33 H 0.18 0.33 8.06 -52.48 -0.42 -0.09 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -33.60 304.05 -9.51 -43.11 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -3.60 Total: -1.10 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -4.47 Total: -4.56 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.17 Total: -57.49 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -1.52 Total: -1.31 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.60 -9.51 -43.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.016 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds