Wall clock time and date at job start Tue Mar 31 2020 01:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47128 * 269.99781 * 3 2 1 5 5 H 1.48502 * 109.47374 * 29.99986 * 3 2 1 6 6 H 1.48495 * 109.47264 * 150.00018 * 3 2 1 7 7 C 1.37877 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99781 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00014 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47135 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47108 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47092 * 179.97438 * 11 10 9 13 13 C 1.38564 * 119.99982 * 179.97438 * 12 11 10 14 14 N 1.32951 * 120.69066 * 0.02562 * 13 12 11 15 15 C 1.32225 * 121.33183 * 179.97438 * 14 13 12 16 16 Cl 1.73599 * 118.83282 * 179.97438 * 15 14 13 17 17 N 1.31622 * 122.32797 * 0.26289 * 15 14 13 18 18 C 1.33579 * 120.41593 * 359.47622 * 17 15 14 19 19 C 1.45915 * 134.87187 * 180.16637 * 18 17 15 20 20 C 1.34614 * 107.05249 * 180.30760 * 19 18 17 21 21 N 1.36402 * 109.88492 * 359.97438 * 20 19 18 22 22 H 0.97001 * 125.10622 * 179.97438 * 21 20 19 23 23 C 1.37595 * 109.78948 * 0.02562 * 21 20 19 24 24 H 0.96998 * 119.99700 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.47167 * 59.99591 * 9 7 2 26 26 H 1.08999 * 109.46769 * 299.99707 * 9 7 2 27 27 H 1.09006 * 109.47424 * 59.99633 * 10 9 7 28 28 H 1.08999 * 109.47079 * 299.99549 * 10 9 7 29 29 H 1.09005 * 109.47436 * 60.00020 * 11 10 9 30 30 H 1.08999 * 109.47063 * 299.99903 * 11 10 9 31 31 H 0.96997 * 120.00143 * 0.02562 * 12 11 10 32 32 H 1.08004 * 126.47083 * 0.32964 * 19 18 17 33 33 H 1.08003 * 125.06262 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5515 -2.6366 0.0022 12 7 6.0398 -4.0178 0.0040 13 6 7.4021 -4.2710 0.0037 14 7 8.2782 -3.2709 0.0024 15 6 9.5808 -3.4980 0.0026 16 17 10.6667 -2.1435 0.0002 17 7 10.0833 -4.7145 -0.0009 18 6 9.2767 -5.7793 0.0055 19 6 9.4794 -7.2243 0.0073 20 6 8.2598 -7.7940 0.0081 21 7 7.2966 -6.8282 0.0075 22 1 6.3408 -6.9936 0.0076 23 6 7.8843 -5.5841 0.0058 24 1 -0.4849 0.8401 -0.0004 25 1 3.8745 -0.6800 0.8910 26 1 3.8752 -0.6805 -0.8889 27 1 3.6585 -3.1511 -0.8875 28 1 3.6580 -3.1497 0.8925 29 1 5.9150 -2.1220 0.8918 30 1 5.9148 -2.1235 -0.8882 31 1 5.4095 -4.7550 0.0045 32 1 10.4287 -7.7394 0.0082 33 1 8.0718 -8.8576 0.0098 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:27 Heat of formation + Delta-G solvation = 45.795928 kcal Electronic energy + Delta-G solvation = -18378.153756 eV Core-core repulsion = 15271.119612 eV Total energy + Delta-G solvation = -3107.034144 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.88800 -39.82682 -38.30301 -37.53827 -35.80204 -34.24675 -32.92625 -31.19287 -30.77102 -28.53436 -25.11763 -24.94805 -23.50442 -22.17404 -21.58748 -20.11655 -18.90436 -18.85961 -17.93784 -16.95924 -16.61027 -16.28978 -16.20164 -16.15436 -15.31845 -14.76059 -14.65168 -14.22368 -14.06880 -13.82431 -13.74371 -13.04411 -12.78696 -12.54691 -12.43230 -12.34049 -12.27136 -11.85944 -11.74284 -11.56682 -11.33753 -10.76924 -10.43326 -10.29640 -9.62240 -8.72776 -8.30446 -6.34346 -0.07799 0.07148 0.43851 1.36928 1.38852 1.50308 1.66814 1.91937 1.97541 2.35828 2.74395 3.05766 3.09308 3.49976 3.61842 4.00601 4.08255 4.19863 4.36437 4.48837 4.63075 4.88818 4.93013 5.02555 5.13664 5.28867 5.42524 5.54525 5.54604 5.61699 5.68576 5.96104 6.25856 6.43213 6.51566 6.73810 7.09106 7.30814 8.85908 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.003746 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.168196 B = 7472.853275 C = 8819.272095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.139 3.861 12 N -0.693 5.693 13 C 0.469 3.531 14 N -0.588 5.588 15 C 0.373 3.627 16 Cl 0.018 6.982 17 N -0.536 5.536 18 C 0.125 3.875 19 C -0.222 4.222 20 C 0.123 3.877 21 N -0.552 5.552 22 H 0.436 0.564 23 C -0.078 4.078 24 H 0.266 0.734 25 H 0.021 0.979 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.421 0.579 32 H 0.174 0.826 33 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.258 -17.269 0.042 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.049 4.049 10 C -0.139 4.139 11 C 0.016 3.984 12 N -0.327 5.327 13 C 0.217 3.783 14 N -0.320 5.320 15 C 0.075 3.925 16 Cl 0.046 6.954 17 N -0.259 5.259 18 C -0.010 4.010 19 C -0.248 4.248 20 C -0.010 4.010 21 N -0.157 5.157 22 H 0.277 0.723 23 C -0.194 4.194 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.259 0.741 32 H 0.192 0.808 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 19.672 -16.176 0.039 25.469 hybrid contribution -1.238 0.429 -0.019 1.310 sum 18.434 -15.747 0.020 24.244 Atomic orbital electron populations 1.70057 1.08231 1.28135 1.52714 1.25972 0.95566 1.03416 0.94214 0.85719 0.79587 0.78552 0.79203 1.19263 1.21126 1.17003 1.21462 0.91928 0.93210 1.50251 0.94425 1.19442 0.93987 0.94564 0.96888 1.21484 0.92105 0.98240 1.02044 1.21324 0.93895 0.81420 1.01793 1.44556 1.01090 1.09639 1.77464 1.17583 0.86240 0.85311 0.89118 1.67278 1.02463 1.34360 1.27869 1.22253 0.85646 0.87849 0.96736 1.98390 1.60511 1.40130 1.96399 1.67281 1.40231 0.97066 1.21370 1.20493 0.86996 0.94667 0.98833 1.21799 1.00263 0.86907 1.15830 1.22927 0.85580 0.96242 0.96239 1.41539 1.10358 1.02007 1.61747 0.72299 1.19087 0.95830 0.87466 1.17022 0.92517 0.96043 0.96153 0.91781 0.91788 0.92142 0.92074 0.74063 0.80837 0.74416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.88 13.96 21.45 0.30 -58.59 16 2 C 0.01 0.30 5.47 84.65 0.46 0.76 16 3 Si 0.95 43.94 27.47 68.60 1.88 45.82 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.53 -29.59 9.66 25.60 0.25 -29.34 16 8 H 0.04 2.28 7.99 -2.91 -0.02 2.25 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.10 -3.45 5.27 30.59 0.16 -3.29 16 11 C 0.14 4.15 5.74 86.38 0.50 4.64 16 12 N -0.69 -16.76 5.70 -344.37 -1.96 -18.73 16 13 C 0.47 12.78 7.54 133.23 1.00 13.78 16 14 N -0.59 -18.81 9.65 -188.08 -1.81 -20.62 16 15 C 0.37 11.73 8.17 180.81 1.48 13.20 16 16 Cl 0.02 0.50 29.26 -2.72 -0.08 0.42 16 17 N -0.54 -16.40 10.46 -180.99 -1.89 -18.29 16 18 C 0.12 3.17 7.57 41.44 0.31 3.49 16 19 C -0.22 -3.43 11.07 23.43 0.26 -3.17 16 20 C 0.12 0.96 11.82 83.15 0.98 1.94 16 21 N -0.55 -6.46 6.05 -187.19 -1.13 -7.59 16 22 H 0.44 2.33 8.96 -92.71 -0.83 1.50 16 23 C -0.08 -1.76 7.21 39.22 0.28 -1.47 16 24 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 26 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 27 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.42 7.54 8.49 -92.71 -0.79 6.75 16 32 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 33 H 0.24 -0.83 8.06 -2.91 -0.02 -0.85 16 Total: -1.00 -75.58 304.05 0.60 -74.98 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -0.51 Total: 2.42 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 5.81 Total: 0.19 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -6.50 Total: -123.82 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -0.08 Total: 0.42 kcal Total: -75.58 0.60 -74.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.778 kcal (2) G-P(sol) polarization free energy of solvation -75.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds