Wall clock time and date at job start Tue Mar 31 2020 01:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.43198 * 120.00088 * 330.59621 * 3 2 1 5 5 N 3.51041 * 140.68652 * 330.59558 * 2 1 3 6 6 C 1.41137 * 119.99906 * 150.58729 * 3 2 1 7 7 C 1.38953 * 119.99760 * 4.99023 * 6 3 2 8 8 H 1.07994 * 120.00229 * 338.12306 * 7 6 3 9 9 C 1.40867 * 119.99693 * 158.13125 * 7 6 3 10 10 N 1.30323 * 120.00092 * 350.85348 * 9 7 6 11 11 Si 1.86797 * 119.99704 * 170.85763 * 9 7 6 12 12 H 1.48504 * 109.47080 * 59.99953 * 11 9 7 13 13 H 1.48502 * 109.46895 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47339 * 299.99893 * 11 9 7 15 15 N 1.38419 * 119.99967 * 184.98385 * 6 3 2 16 16 C 1.38748 * 120.00135 * 121.15410 * 15 6 3 17 17 N 1.32958 * 120.70227 * 356.80768 * 16 15 6 18 18 C 1.32091 * 121.35439 * 180.02562 * 17 16 15 19 19 N 1.31507 * 122.37097 * 0.02562 * 18 17 16 20 20 C 1.33518 * 120.42562 * 359.97438 * 19 18 17 21 21 C 1.45920 * 134.90263 * 179.97438 * 20 19 18 22 22 C 1.34621 * 107.04247 * 180.02562 * 21 20 19 23 23 N 1.36425 * 109.88890 * 359.97438 * 22 21 20 24 24 H 0.96997 * 125.09268 * 179.73728 * 23 22 21 25 25 C 1.37512 * 109.80702 * 0.02562 * 23 22 21 26 26 H 0.96998 * 120.00175 * 185.29046 * 10 9 7 27 27 H 0.97003 * 120.00351 * 301.14938 * 15 6 3 28 28 H 1.07998 * 118.81209 * 179.97438 * 18 17 16 29 29 H 1.08003 * 126.47553 * 0.06465 * 21 20 19 30 30 H 1.07996 * 125.05367 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.0794 0.6088 5 7 3.8519 -1.9376 1.0920 6 6 3.2732 1.0657 -0.6003 7 6 2.5818 2.1630 -1.0989 8 1 1.5369 2.0716 -1.3561 9 6 3.2439 3.3947 -1.2690 10 7 4.4475 3.5582 -0.7967 11 14 2.3967 4.7936 -2.1716 12 1 1.1441 5.1549 -1.4604 13 1 3.2985 5.9727 -2.2149 14 1 2.0738 4.3656 -3.5564 15 7 4.6535 1.0172 -0.6921 16 6 5.2689 1.0829 -1.9339 17 7 4.5455 1.1290 -3.0485 18 6 5.1178 1.1913 -4.2373 19 7 6.4239 1.2107 -4.3898 20 6 7.2296 1.1678 -3.3259 21 6 8.6752 1.1714 -3.1278 22 6 8.8918 1.1102 -1.8006 23 7 7.7003 1.0684 -1.1374 24 1 7.5998 1.0181 -0.1739 25 6 6.6633 1.1018 -2.0398 26 1 4.8737 4.4282 -0.8457 27 1 5.1906 0.9373 0.1117 28 1 4.4906 1.2267 -5.1158 29 1 9.4290 1.2156 -3.9001 30 1 9.8641 1.0962 -1.3307 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211490.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:29 Heat of formation + Delta-G solvation = 128.689522 kcal Electronic energy + Delta-G solvation = -20576.716185 eV Core-core repulsion = 17372.169083 eV Total energy + Delta-G solvation = -3204.547102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.077 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.60847 -39.78288 -38.76694 -37.08138 -36.53854 -35.41395 -33.70715 -32.04643 -30.90176 -29.95767 -28.77498 -24.89194 -24.38909 -22.88852 -21.59039 -20.59140 -20.03814 -18.95659 -18.21257 -17.83036 -17.42009 -16.92604 -16.17674 -15.51180 -15.31830 -15.19248 -14.59252 -14.40116 -13.97168 -13.94328 -13.90177 -13.49421 -13.41096 -13.37964 -13.25078 -13.13843 -12.85330 -12.70380 -12.40290 -12.01180 -11.85274 -11.52950 -10.57138 -9.86168 -9.72526 -9.43492 -9.17387 -8.35736 -7.09815 0.16511 0.53014 0.75061 1.34259 1.44465 1.53645 1.88525 2.00769 2.06366 2.15262 2.18563 2.21796 2.55714 2.67780 3.25119 3.40949 3.41951 3.62698 3.84828 3.92814 4.15785 4.38168 4.60646 4.66875 4.74810 4.94750 5.36122 5.43672 5.59274 5.66413 5.79896 6.04115 6.14149 6.31871 6.60033 6.63758 6.87891 7.16989 7.34337 7.65097 7.68520 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.008253 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.862965 B = 3391.825871 C = 4571.561546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C 0.330 3.670 3 C -0.329 4.329 4 C 0.316 3.684 5 N -0.558 5.558 6 C 0.378 3.622 7 C -0.343 4.343 8 H 0.101 0.899 9 C 0.057 3.943 10 N -0.729 5.729 11 Si 0.973 3.027 12 H -0.253 1.253 13 H -0.260 1.260 14 H -0.255 1.255 15 N -0.628 5.628 16 C 0.485 3.515 17 N -0.578 5.578 18 C 0.300 3.700 19 N -0.558 5.558 20 C 0.114 3.886 21 C -0.232 4.232 22 C 0.109 3.891 23 N -0.562 5.562 24 H 0.427 0.573 25 C -0.076 4.076 26 H 0.309 0.691 27 H 0.409 0.591 28 H 0.210 0.790 29 H 0.169 0.831 30 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 6.873 -3.116 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.242 5.242 2 C 0.024 3.976 3 C -0.348 4.348 4 C 0.011 3.989 5 N -0.242 5.242 6 C 0.274 3.726 7 C -0.370 4.370 8 H 0.119 0.881 9 C -0.174 4.174 10 N -0.347 5.347 11 Si 0.792 3.208 12 H -0.177 1.177 13 H -0.183 1.183 14 H -0.178 1.178 15 N -0.253 5.253 16 C 0.235 3.765 17 N -0.304 5.304 18 C 0.009 3.991 19 N -0.278 5.278 20 C -0.022 4.022 21 C -0.259 4.259 22 C -0.024 4.024 23 N -0.165 5.165 24 H 0.266 0.734 25 C -0.191 4.191 26 H 0.121 0.879 27 H 0.246 0.754 28 H 0.226 0.774 29 H 0.187 0.813 30 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 11.233 5.709 -3.102 12.977 hybrid contribution 0.215 0.696 0.959 1.204 sum 11.448 6.405 -2.144 13.292 Atomic orbital electron populations 1.81034 1.12727 1.12016 1.18385 1.24835 0.91496 0.91103 0.90175 1.12901 0.82661 1.02270 1.36971 1.25301 0.92164 0.91152 0.90318 1.81074 1.10568 1.13203 1.19322 1.16574 0.80470 0.88367 0.87193 1.20294 0.98388 0.92386 1.25943 0.88066 1.26949 0.94646 1.02698 0.93114 1.69393 1.11568 1.27655 1.26107 0.85286 0.79655 0.75853 0.80005 1.17685 1.18347 1.17846 1.41091 1.04797 1.75016 1.04439 1.17509 0.84386 0.87891 0.86713 1.68072 1.39484 1.24789 0.98060 1.24810 0.88433 0.91912 0.93931 1.67883 1.05236 1.21438 1.33249 1.20645 0.96090 0.98856 0.86597 1.21702 0.90583 1.16692 0.96895 1.22760 0.90456 0.97621 0.91525 1.41498 1.03851 1.62389 1.08789 0.73363 1.19181 0.89549 1.16728 0.93654 0.87866 0.75382 0.77396 0.81343 0.75286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.04 18.54 19.00 0.35 -26.69 16 2 C 0.33 15.45 13.91 88.33 1.23 16.68 16 3 C -0.33 -14.56 5.88 -20.07 -0.12 -14.68 16 4 C 0.32 14.21 14.79 88.32 1.31 15.52 16 5 N -0.56 -25.73 18.54 19.01 0.35 -25.38 16 6 C 0.38 15.76 5.52 38.99 0.22 15.97 16 7 C -0.34 -14.17 7.74 23.09 0.18 -13.99 16 8 H 0.10 4.34 7.03 -2.91 -0.02 4.32 16 9 C 0.06 2.10 4.89 85.56 0.42 2.51 16 10 N -0.73 -26.25 11.00 21.98 0.24 -26.01 16 11 Si 0.97 30.20 29.58 68.60 2.03 32.23 16 12 H -0.25 -7.85 7.11 99.48 0.71 -7.14 16 13 H -0.26 -7.55 7.11 99.48 0.71 -6.84 16 14 H -0.25 -8.21 7.11 99.48 0.71 -7.50 16 15 N -0.63 -23.45 3.36 -184.06 -0.62 -24.07 16 16 C 0.49 18.24 5.91 133.16 0.79 19.03 16 17 N -0.58 -22.86 8.87 -197.25 -1.75 -24.61 16 18 C 0.30 10.75 12.26 180.88 2.22 12.96 16 19 N -0.56 -20.22 10.50 -190.20 -2.00 -22.22 16 20 C 0.11 3.84 7.57 41.47 0.31 4.15 16 21 C -0.23 -5.61 11.07 23.43 0.26 -5.35 16 22 C 0.11 1.93 11.82 83.15 0.98 2.91 16 23 N -0.56 -12.95 6.05 -187.20 -1.13 -14.09 16 24 H 0.43 7.82 8.96 -92.71 -0.83 6.99 16 25 C -0.08 -2.51 7.21 39.24 0.28 -2.23 16 26 H 0.31 10.18 8.29 -92.71 -0.77 9.41 16 27 H 0.41 13.87 8.80 -92.71 -0.82 13.05 16 28 H 0.21 6.04 8.06 -2.91 -0.02 6.02 16 29 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.23 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -59.57 293.60 5.17 -54.41 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.39 Total: 22.95 kcal Atomic # 6 Polarization: 45.41 SS G_CDS: 8.07 Total: 53.49 kcal Atomic # 7 Polarization: -158.52 SS G_CDS: -4.55 Total: -163.07 kcal Atomic # 14 Polarization: 30.20 SS G_CDS: 2.03 Total: 32.23 kcal Total: -59.57 5.17 -54.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211490.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.095 kcal (2) G-P(sol) polarization free energy of solvation -59.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds