Wall clock time and date at job start Tue Mar 31 2020 01:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31589 * 119.98068 * 2 1 4 4 C 1.33261 * 119.99264 * 179.97438 * 3 2 1 5 5 C 1.43200 * 120.03091 * 179.97438 * 4 3 2 6 6 N 4.69447 * 134.23356 * 359.97438 * 2 1 3 7 7 C 1.39586 * 119.94956 * 359.97438 * 4 3 2 8 8 N 1.31989 * 119.95761 * 359.77288 * 7 4 3 9 9 C 1.32787 * 120.01166 * 0.47820 * 8 7 4 10 10 N 1.38746 * 119.97858 * 179.76709 * 9 8 7 11 11 C 1.38409 * 119.99830 * 354.60170 * 10 9 8 12 12 C 1.38958 * 119.99740 * 301.46126 * 11 10 9 13 13 H 1.08001 * 119.99585 * 151.99163 * 12 11 10 14 14 C 1.40859 * 120.00164 * 331.99328 * 12 11 10 15 15 N 1.30327 * 120.00006 * 2.78262 * 14 12 11 16 16 Si 1.86792 * 119.99922 * 182.78457 * 14 12 11 17 17 H 1.48498 * 109.47493 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47445 * 119.99798 * 16 14 12 19 19 H 1.48501 * 109.47400 * 239.99742 * 16 14 12 20 20 C 1.41142 * 119.99984 * 121.46460 * 11 10 9 21 21 C 1.43197 * 119.99794 * 174.76786 * 20 11 10 22 22 N 7.10921 * 103.67332 * 174.92100 * 2 1 3 23 23 C 1.43191 * 120.00021 * 354.48923 * 20 11 10 24 24 N 5.12887 * 81.57505 * 143.14674 * 2 1 3 25 25 H 1.08998 * 109.47324 * 269.98432 * 1 2 3 26 26 H 1.08999 * 109.47042 * 29.97770 * 1 2 3 27 27 H 1.09001 * 109.47180 * 149.97955 * 1 2 3 28 28 H 1.08000 * 120.02165 * 180.02562 * 7 4 3 29 29 H 0.97000 * 119.99821 * 174.59076 * 10 9 8 30 30 H 0.96996 * 119.99668 * 185.01055 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1646 1.1398 0.0000 4 6 3.4972 1.1401 0.0005 5 6 4.2136 2.3800 0.0000 6 7 4.7818 3.3636 -0.0015 7 6 4.1943 -0.0692 0.0016 8 7 3.5328 -1.2113 0.0066 9 6 2.2049 -1.2098 0.0011 10 7 1.5102 -2.4108 0.0015 11 6 2.1972 -3.6076 -0.1051 12 6 3.0058 -3.8486 -1.2092 13 1 3.8575 -4.5068 -1.1213 14 6 2.7146 -3.2344 -2.4429 15 7 1.7194 -2.3981 -2.5357 16 14 3.7549 -3.6187 -3.9460 17 1 4.8153 -4.5912 -3.5787 18 1 2.8950 -4.2008 -5.0076 19 1 4.3819 -2.3691 -4.4468 20 6 2.0763 -4.5833 0.9076 21 6 2.6959 -5.8641 0.7454 22 7 3.1875 -6.8806 0.6115 23 6 1.3392 -4.2903 2.0998 24 7 0.7556 -4.0597 3.0429 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 5.2743 -0.0704 0.0024 29 1 0.5431 -2.4116 0.0767 30 1 1.4733 -2.0310 -3.3991 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214152.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:47 Heat of formation + Delta-G solvation = 126.854342 kcal Electronic energy + Delta-G solvation = -20230.563802 eV Core-core repulsion = 17025.937121 eV Total energy + Delta-G solvation = -3204.626681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.17650 -39.22351 -37.66270 -37.00955 -36.52772 -35.42102 -35.35000 -33.45596 -31.08093 -29.13323 -28.70951 -25.83918 -24.19299 -22.95472 -20.88119 -19.96849 -19.47505 -19.02369 -17.97871 -17.74949 -16.54032 -16.29810 -15.28407 -15.21208 -15.03712 -14.62759 -14.52869 -14.31563 -14.02579 -13.87745 -13.74557 -13.64362 -13.46008 -13.42134 -13.31841 -13.09269 -12.96974 -12.70776 -12.69061 -12.44018 -12.26132 -11.94424 -11.50088 -11.25079 -10.08148 -9.78513 -9.25292 -8.54224 -7.07970 -0.37821 0.21863 0.66212 1.40844 1.49563 1.51670 1.55589 1.94645 2.03241 2.10605 2.14776 2.28228 2.54453 2.62578 2.70559 2.98080 3.41181 3.49320 3.50427 3.64887 3.90554 4.12752 4.45960 4.61271 4.74173 4.82627 4.85456 5.02823 5.33501 5.44727 5.68701 5.93755 6.17620 6.18915 6.40495 6.60408 6.64551 7.09845 7.21174 7.38317 7.74110 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.007305 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.282060 B = 3832.134660 C = 4883.173496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.039 3.961 3 N -0.389 5.389 4 C 0.032 3.968 5 C 0.308 3.692 6 N -0.443 5.443 7 C 0.165 3.835 8 N -0.500 5.500 9 C 0.421 3.579 10 N -0.609 5.609 11 C 0.375 3.625 12 C -0.349 4.349 13 H 0.102 0.898 14 C 0.053 3.947 15 N -0.732 5.732 16 Si 0.976 3.024 17 H -0.259 1.259 18 H -0.257 1.257 19 H -0.261 1.261 20 C -0.315 4.315 21 C 0.330 3.670 22 N -0.557 5.557 23 C 0.316 3.684 24 N -0.551 5.551 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.202 0.798 29 H 0.419 0.581 30 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 6.603 -6.305 9.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 N -0.105 5.105 4 C -0.108 4.108 5 C -0.008 4.008 6 N -0.122 5.122 7 C 0.000 4.000 8 N -0.220 5.220 9 C 0.179 3.821 10 N -0.232 5.232 11 C 0.271 3.729 12 C -0.376 4.376 13 H 0.120 0.880 14 C -0.177 4.177 15 N -0.351 5.351 16 Si 0.797 3.203 17 H -0.183 1.183 18 H -0.182 1.182 19 H -0.185 1.185 20 C -0.334 4.334 21 C 0.023 3.977 22 N -0.240 5.240 23 C 0.009 3.991 24 N -0.234 5.234 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.218 0.782 29 H 0.260 0.740 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.488 6.981 -5.180 8.707 hybrid contribution -0.174 -0.293 -0.822 0.890 sum -0.662 6.688 -6.002 9.011 Atomic orbital electron populations 1.20666 0.85621 1.04833 1.03915 1.21778 0.99007 0.85961 1.04851 1.67860 1.07092 1.29223 1.06301 1.16917 0.89850 0.88391 1.15595 1.24683 0.92409 0.91440 0.92295 1.81220 1.10081 1.10045 1.10819 1.23843 1.02373 0.84917 0.88886 1.68311 1.06758 1.28972 1.17927 1.19176 0.89272 0.86755 0.86930 1.41521 1.09003 1.01190 1.71517 1.16667 0.86056 0.81670 0.88534 1.20320 1.08128 1.16904 0.92265 0.87965 1.26925 0.95782 0.91523 1.03447 1.69403 1.19700 1.15455 1.30583 0.85129 0.79160 0.79832 0.76222 1.18263 1.18159 1.18503 1.12923 1.30061 0.92902 0.97556 1.24890 0.90397 0.91193 0.91213 1.81105 1.17981 1.13599 1.11329 1.25157 0.90718 0.91807 0.91395 1.80951 1.18565 1.10674 1.13200 0.89475 0.89113 0.89401 0.78164 0.73956 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.71 71.24 0.69 -1.26 16 2 C 0.04 1.09 6.81 42.94 0.29 1.38 16 3 N -0.39 -11.27 10.34 -176.02 -1.82 -13.09 16 4 C 0.03 0.89 6.59 40.50 0.27 1.15 16 5 C 0.31 8.55 15.56 88.33 1.37 9.92 16 6 N -0.44 -13.46 18.54 19.00 0.35 -13.11 16 7 C 0.17 4.33 10.92 84.99 0.93 5.26 16 8 N -0.50 -15.87 9.09 -191.53 -1.74 -17.61 16 9 C 0.42 13.07 5.91 133.16 0.79 13.86 16 10 N -0.61 -19.41 3.20 -184.33 -0.59 -20.00 16 11 C 0.37 13.69 5.47 38.99 0.21 13.91 16 12 C -0.35 -12.70 7.50 23.08 0.17 -12.53 16 13 H 0.10 3.94 7.29 -2.91 -0.02 3.92 16 14 C 0.05 1.73 5.30 85.56 0.45 2.18 16 15 N -0.73 -22.72 10.89 21.98 0.24 -22.48 16 16 Si 0.98 26.92 29.57 68.60 2.03 28.95 16 17 H -0.26 -7.67 7.11 99.48 0.71 -6.96 16 18 H -0.26 -6.90 7.11 99.48 0.71 -6.19 16 19 H -0.26 -7.09 7.11 99.48 0.71 -6.38 16 20 C -0.32 -12.58 5.88 -20.08 -0.12 -12.69 16 21 C 0.33 14.19 14.06 88.32 1.24 15.43 16 22 N -0.56 -25.28 18.54 19.02 0.35 -24.93 16 23 C 0.32 12.98 14.81 88.37 1.31 14.29 16 24 N -0.55 -23.66 18.52 18.96 0.35 -23.31 16 25 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 1.73 6.63 -2.39 -0.02 1.71 16 28 H 0.20 3.81 8.06 -2.91 -0.02 3.79 16 29 H 0.42 11.96 6.87 -92.71 -0.64 11.32 16 30 H 0.31 8.70 8.29 -92.71 -0.77 7.93 16 Total: -1.00 -49.57 301.93 7.40 -42.17 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.62 Total: 12.50 kcal Atomic # 6 Polarization: 43.30 SS G_CDS: 7.61 Total: 50.91 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -2.85 Total: -134.53 kcal Atomic # 14 Polarization: 26.92 SS G_CDS: 2.03 Total: 28.95 kcal Total: -49.57 7.40 -42.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214152.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.025 kcal (2) G-P(sol) polarization free energy of solvation -49.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds