Wall clock time and date at job start Tue Mar 31 2020 01:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32025 * 120.01803 * 2 1 4 4 C 1.32759 * 120.00854 * 180.23156 * 3 2 1 5 5 N 1.38739 * 119.97558 * 179.75984 * 4 3 2 6 6 C 1.38414 * 120.00095 * 173.47117 * 5 4 3 7 7 C 1.38954 * 120.00324 * 299.69308 * 6 5 4 8 8 H 1.07993 * 120.00279 * 158.01829 * 7 6 5 9 9 C 1.40863 * 119.99630 * 338.02097 * 7 6 5 10 10 N 1.30319 * 120.00184 * 351.02622 * 9 7 6 11 11 Si 1.86800 * 119.99520 * 171.03270 * 9 7 6 12 12 H 1.48494 * 109.47577 * 90.00161 * 11 9 7 13 13 H 1.48513 * 109.46787 * 209.99603 * 11 9 7 14 14 H 1.48497 * 109.47224 * 329.99462 * 11 9 7 15 15 C 1.41139 * 119.99745 * 119.96523 * 6 5 4 16 16 C 1.43206 * 119.99870 * 4.87431 * 15 6 5 17 17 N 6.25703 * 127.04066 * 324.31737 * 2 1 3 18 18 C 1.43199 * 119.99967 * 184.87892 * 15 6 5 19 19 N 7.94660 * 159.06763 * 344.80395 * 2 1 3 20 20 C 1.39707 * 120.04648 * 359.48498 * 4 3 2 21 21 N 1.31569 * 120.03822 * 0.23379 * 20 4 3 22 22 C 1.33300 * 119.98554 * 0.02562 * 21 20 4 23 23 C 1.43197 * 120.02046 * 179.97438 * 22 21 20 24 24 N 3.48244 * 80.34026 * 179.72415 * 2 1 3 25 25 H 1.09002 * 109.46992 * 270.30287 * 1 2 3 26 26 H 1.08997 * 109.46987 * 30.30347 * 1 2 3 27 27 H 1.08995 * 109.46865 * 150.30481 * 1 2 3 28 28 H 0.96999 * 120.00229 * 353.48239 * 5 4 3 29 29 H 0.97008 * 120.00068 * 185.02652 * 10 9 7 30 30 H 1.08004 * 119.98396 * 180.25035 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1674 1.1432 0.0000 4 6 3.4950 1.1429 -0.0046 5 7 4.1884 2.3446 -0.0097 6 6 5.5663 2.3492 0.1218 7 6 6.1573 1.8181 1.2617 8 1 7.1866 1.4926 1.2347 9 6 5.4136 1.7043 2.4526 10 7 4.2346 2.2527 2.5396 11 14 6.1176 0.7673 3.9073 12 1 6.8879 1.6985 4.7701 13 1 5.0093 0.1671 4.6927 14 1 7.0150 -0.3088 3.4155 15 6 6.3707 2.8985 -0.8995 16 6 5.7603 3.5444 -2.0225 17 7 5.2761 4.0568 -2.9132 18 6 7.7973 2.8100 -0.8129 19 7 8.9291 2.7398 -0.7442 20 6 4.1944 -0.0665 0.0013 21 7 3.5380 -1.2068 0.0069 22 6 2.2050 -1.2082 0.0064 23 6 1.4900 -2.4488 0.0119 24 7 0.9226 -3.4330 0.0165 25 1 -0.3633 0.0054 1.0277 26 1 -0.3633 0.8872 -0.5185 27 1 -0.3633 -0.8927 -0.5091 28 1 3.7076 3.1817 -0.1052 29 1 3.7535 2.2373 3.3819 30 1 5.2744 -0.0654 0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214258.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:52 Heat of formation + Delta-G solvation = 124.724869 kcal Electronic energy + Delta-G solvation = -20113.185550 eV Core-core repulsion = 16908.466528 eV Total energy + Delta-G solvation = -3204.719022 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.25003 -39.43868 -37.69085 -37.04370 -36.54482 -35.70115 -35.25076 -33.45745 -31.23811 -29.23025 -28.74829 -25.88686 -24.36485 -22.81902 -20.89167 -20.42290 -19.52578 -18.97736 -17.88217 -17.59282 -16.71897 -16.40518 -15.73109 -15.29461 -14.80492 -14.55915 -14.46657 -14.33211 -14.09193 -13.93867 -13.90593 -13.82982 -13.48141 -13.39216 -13.29459 -13.17190 -13.10992 -12.79358 -12.71163 -12.56808 -12.38806 -12.04023 -11.58473 -11.17721 -10.27309 -9.90665 -9.35400 -8.66095 -7.18723 -0.45612 0.14499 0.52853 1.37662 1.47476 1.49149 1.53827 1.88430 1.91680 2.05486 2.08430 2.25812 2.51965 2.56309 2.63173 2.89558 3.28800 3.38859 3.46666 3.69199 3.83386 4.02214 4.47475 4.52863 4.64186 4.69821 4.73636 5.00275 5.18786 5.33844 5.51006 5.88971 5.99278 6.17316 6.37504 6.44971 6.56270 6.96508 7.17992 7.34977 7.62505 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.006942 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.008070 B = 4032.499421 C = 5073.281276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.198 3.802 3 N -0.511 5.511 4 C 0.423 3.577 5 N -0.610 5.610 6 C 0.365 3.635 7 C -0.362 4.362 8 H 0.120 0.880 9 C 0.048 3.952 10 N -0.720 5.720 11 Si 0.968 3.032 12 H -0.253 1.253 13 H -0.265 1.265 14 H -0.247 1.247 15 C -0.309 4.309 16 C 0.314 3.686 17 N -0.552 5.552 18 C 0.330 3.670 19 N -0.549 5.549 20 C 0.002 3.998 21 N -0.382 5.382 22 C 0.019 3.981 23 C 0.307 3.693 24 N -0.436 5.436 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.413 0.587 29 H 0.315 0.685 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 -3.381 6.466 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.052 3.948 3 N -0.234 5.234 4 C 0.181 3.819 5 N -0.231 5.231 6 C 0.261 3.739 7 C -0.388 4.388 8 H 0.138 0.862 9 C -0.184 4.184 10 N -0.337 5.337 11 Si 0.788 3.212 12 H -0.178 1.178 13 H -0.189 1.189 14 H -0.169 1.169 15 C -0.328 4.328 16 C 0.007 3.993 17 N -0.235 5.235 18 C 0.023 3.977 19 N -0.232 5.232 20 C -0.172 4.172 21 N -0.096 5.096 22 C -0.120 4.120 23 C -0.009 4.009 24 N -0.114 5.114 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.251 0.749 29 H 0.128 0.872 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.632 -4.194 5.324 10.207 hybrid contribution 0.276 0.550 0.819 1.024 sum -7.356 -3.644 6.143 10.253 Atomic orbital electron populations 1.20931 0.84955 1.05059 1.05280 1.22297 0.99000 0.85799 0.87696 1.67933 1.06210 1.28832 1.20432 1.19290 0.88836 0.87463 0.86314 1.41185 1.04841 1.05746 1.71282 1.16693 0.79135 0.88521 0.89521 1.20605 1.00232 1.26227 0.91784 0.86219 1.26984 0.93972 0.94184 1.03226 1.69454 1.09685 1.24205 1.30403 0.85251 0.79816 0.79600 0.76571 1.17751 1.18907 1.16949 1.12764 0.83254 1.35702 1.01081 1.25288 0.92178 0.90562 0.91249 1.81099 1.10041 1.18700 1.13656 1.24715 0.91280 0.90436 0.91245 1.81095 1.12665 1.17718 1.11692 1.23432 1.02238 0.85824 1.05710 1.68061 1.07047 1.29699 1.04799 1.16852 0.89891 0.88252 1.17021 1.24557 0.92414 0.91364 0.92593 1.81219 1.10039 1.09647 1.10502 0.87601 0.88155 0.89582 0.74868 0.87174 0.79770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 9.78 71.23 0.70 -1.20 16 2 C 0.20 5.25 6.82 42.84 0.29 5.54 16 3 N -0.51 -15.45 10.44 -179.69 -1.88 -17.33 16 4 C 0.42 13.67 6.23 133.19 0.83 14.50 16 5 N -0.61 -20.13 3.31 -184.32 -0.61 -20.74 16 6 C 0.37 12.71 4.95 38.99 0.19 12.91 16 7 C -0.36 -12.13 6.84 23.08 0.16 -11.97 16 8 H 0.12 4.04 7.03 -2.91 -0.02 4.02 16 9 C 0.05 1.50 4.83 85.56 0.41 1.91 16 10 N -0.72 -22.75 11.07 21.98 0.24 -22.51 16 11 Si 0.97 25.58 29.58 68.60 2.03 27.61 16 12 H -0.25 -6.69 7.11 99.48 0.71 -5.98 16 13 H -0.26 -6.99 7.11 99.48 0.71 -6.28 16 14 H -0.25 -6.67 7.11 99.48 0.71 -5.96 16 15 C -0.31 -11.80 5.88 -20.07 -0.12 -11.92 16 16 C 0.31 12.79 14.81 88.33 1.31 14.10 16 17 N -0.55 -23.98 18.54 19.00 0.35 -23.62 16 18 C 0.33 13.45 13.92 88.33 1.23 14.67 16 19 N -0.55 -23.66 18.54 19.00 0.35 -23.30 16 20 C 0.00 0.07 9.78 85.09 0.83 0.91 16 21 N -0.38 -12.30 10.42 -187.84 -1.96 -14.26 16 22 C 0.02 0.57 6.59 40.48 0.27 0.83 16 23 C 0.31 8.72 14.01 88.33 1.24 9.95 16 24 N -0.44 -13.10 18.54 19.00 0.35 -12.75 16 25 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 1.42 7.07 -2.39 -0.02 1.41 16 28 H 0.41 13.52 8.92 -92.71 -0.83 12.70 16 29 H 0.32 9.08 8.29 -92.70 -0.77 8.31 16 30 H 0.19 5.84 6.17 -2.91 -0.02 5.82 16 Total: -1.00 -46.10 299.95 6.65 -39.45 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.43 Total: 17.22 kcal Atomic # 6 Polarization: 42.89 SS G_CDS: 7.34 Total: 50.22 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -3.14 Total: -134.50 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: 2.03 Total: 27.61 kcal Total: -46.10 6.65 -39.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214258.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.172 kcal (2) G-P(sol) polarization free energy of solvation -46.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds