Wall clock time and date at job start Tue Mar 31 2020 01:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38665 * 119.83229 * 2 1 4 4 N 1.32098 * 120.35119 * 179.97438 * 3 2 1 5 5 C 1.32718 * 120.00393 * 0.02562 * 4 3 2 6 6 N 1.38600 * 120.17259 * 179.97438 * 5 4 3 7 7 C 1.38433 * 119.99499 * 355.10320 * 6 5 4 8 8 C 1.38945 * 120.00156 * 299.85269 * 7 6 5 9 9 H 1.07996 * 120.00390 * 159.32904 * 8 7 6 10 10 C 1.40865 * 119.99873 * 339.32596 * 8 7 6 11 11 N 1.30326 * 120.00221 * 350.18776 * 10 8 7 12 12 Si 1.86805 * 120.00005 * 170.18278 * 10 8 7 13 13 H 1.48506 * 109.46700 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47092 * 120.00240 * 12 10 8 15 15 H 1.48501 * 109.47151 * 240.00175 * 12 10 8 16 16 C 1.41133 * 119.99935 * 119.85555 * 7 6 5 17 17 C 1.43194 * 120.00098 * 185.91169 * 16 7 6 18 18 N 7.87414 * 148.69278 * 11.99838 * 2 1 3 19 19 C 1.43199 * 119.99978 * 5.91473 * 16 7 6 20 20 N 6.77756 * 154.81439 * 88.20020 * 2 1 3 21 21 C 1.40509 * 119.65962 * 0.25431 * 5 4 3 22 22 C 1.43204 * 120.17125 * 179.72118 * 21 5 4 23 23 N 4.69699 * 134.13255 * 180.24609 * 2 1 3 24 24 N 1.31841 * 119.82528 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.46713 * 89.99865 * 1 2 3 26 26 H 1.09001 * 109.47404 * 209.99922 * 1 2 3 27 27 H 1.08993 * 109.46907 * 330.00344 * 1 2 3 28 28 H 1.08000 * 119.82242 * 359.97313 * 3 2 1 29 29 H 0.96997 * 120.00549 * 175.37213 * 6 5 4 30 30 H 0.96993 * 119.99948 * 185.05179 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.2029 0.0000 4 7 3.5177 1.2149 0.0005 5 6 4.1918 0.0716 0.0005 6 7 5.5778 0.0801 0.0005 7 6 6.2625 1.2788 -0.1018 8 6 6.0862 2.0865 -1.2186 9 1 6.3326 3.1369 -1.1697 10 6 5.5860 1.5354 -2.4145 11 7 5.4690 0.2432 -2.5377 12 14 5.0901 2.6566 -3.8240 13 1 5.3188 4.0714 -3.4349 14 1 5.9057 2.3352 -5.0226 15 1 3.6522 2.4544 -4.1350 16 6 7.1398 1.6805 0.9281 17 6 7.7504 2.9750 0.8843 18 7 8.2346 4.0022 0.8506 19 6 7.4194 0.7935 2.0170 20 7 7.6403 0.0906 2.8828 21 6 3.4931 -1.1475 -0.0055 22 6 4.2094 -2.3875 -0.0115 23 7 4.7776 -3.3711 -0.0145 24 7 2.1627 -1.1438 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6512 2.1349 -0.0004 29 1 6.0679 -0.7542 0.0683 30 1 5.1945 -0.1403 -3.3852 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158214532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:50 Heat of formation + Delta-G solvation = 137.448172 kcal Electronic energy + Delta-G solvation = -20330.739336 eV Core-core repulsion = 17126.572038 eV Total energy + Delta-G solvation = -3204.167298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00306 -37.84032 -36.37480 -35.48848 -34.79370 -34.27838 -33.51104 -32.40554 -30.39964 -27.29829 -26.97299 -25.32615 -23.04911 -21.40968 -19.27966 -18.92485 -18.27878 -17.48719 -16.66534 -16.39556 -15.29192 -15.08792 -14.37297 -13.93380 -13.70415 -13.32664 -12.91968 -12.78128 -12.73361 -12.64127 -12.54455 -12.38558 -12.23283 -11.91441 -11.82955 -11.67006 -11.60617 -11.29352 -11.20871 -11.00036 -10.99494 -10.65695 -10.27409 -10.03985 -8.94582 -8.43062 -7.94737 -7.26507 -5.52173 0.74508 1.40825 2.07826 2.61824 2.72078 2.74553 2.76952 3.15987 3.29185 3.33432 3.77313 3.80745 3.98689 4.07419 4.15716 4.24645 4.52152 4.64366 4.97318 5.09381 5.17203 5.30530 5.51014 5.61925 5.75687 5.90118 6.07922 6.22450 6.37264 6.88257 7.05704 7.17877 7.51302 7.55930 7.69656 7.83111 7.98753 8.30575 8.87685 9.03922 9.07575 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.008329 C = 0.006439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.279440 B = 3361.066432 C = 4347.420737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.003 4.003 3 C 0.141 3.859 4 N -0.467 5.467 5 C 0.443 3.557 6 N -0.615 5.615 7 C 0.373 3.627 8 C -0.343 4.343 9 H 0.116 0.884 10 C 0.072 3.928 11 N -0.732 5.732 12 Si 0.928 3.072 13 H -0.245 1.245 14 H -0.263 1.263 15 H -0.261 1.261 16 C -0.307 4.307 17 C 0.327 3.673 18 N -0.530 5.530 19 C 0.304 3.696 20 N -0.530 5.530 21 C 0.061 3.939 22 C 0.282 3.718 23 N -0.406 5.406 24 N -0.370 5.370 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.173 0.827 29 H 0.413 0.587 30 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.440 0.808 -5.398 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.150 4.150 3 C -0.027 4.027 4 N -0.187 5.187 5 C 0.201 3.799 6 N -0.235 5.235 7 C 0.270 3.730 8 C -0.370 4.370 9 H 0.134 0.866 10 C -0.158 4.158 11 N -0.351 5.351 12 Si 0.749 3.251 13 H -0.167 1.167 14 H -0.187 1.187 15 H -0.185 1.185 16 C -0.326 4.326 17 C 0.019 3.981 18 N -0.212 5.212 19 C -0.003 4.003 20 N -0.213 5.213 21 C -0.087 4.087 22 C -0.034 4.034 23 N -0.084 5.084 24 N -0.087 5.087 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.190 0.810 29 H 0.251 0.749 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.398 -0.299 -4.237 11.232 hybrid contribution -0.498 0.148 -1.072 1.191 sum -10.896 -0.150 -5.309 12.121 Atomic orbital electron populations 1.20464 0.87769 1.03293 1.02753 1.21786 0.97933 0.88714 1.06588 1.23704 0.89535 0.99082 0.90351 1.68346 1.08087 1.26101 1.16169 1.18628 0.85756 0.88488 0.87055 1.41386 1.01117 1.09313 1.71650 1.16708 0.85680 0.81217 0.89404 1.20293 1.25740 0.98887 0.92042 0.86591 1.26596 0.91202 0.96024 1.02022 1.69457 1.24559 1.12798 1.28260 0.85844 0.79633 0.81354 0.78273 1.16740 1.18704 1.18548 1.12755 1.24945 0.92444 1.02427 1.24576 0.90703 0.91199 0.91650 1.81075 1.15650 1.13186 1.11299 1.25260 0.91305 0.92286 0.91447 1.81131 1.15020 1.12149 1.12957 1.16308 0.89504 0.86670 1.16215 1.24650 0.93400 0.91941 0.93440 1.81200 1.08292 1.09543 1.09390 1.67830 1.05460 1.30228 1.05154 0.90936 0.90833 0.90634 0.81014 0.74872 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.18 36.01 0.37 -0.34 16 2 C 0.00 -0.03 6.78 -82.43 -0.56 -0.59 16 3 C 0.14 1.81 10.87 -17.28 -0.19 1.62 16 4 N -0.47 -7.79 9.04 -11.94 -0.11 -7.90 16 5 C 0.44 7.88 5.86 -154.62 -0.91 6.97 16 6 N -0.61 -11.68 3.23 -9.45 -0.03 -11.71 16 7 C 0.37 7.51 5.47 -83.52 -0.46 7.05 16 8 C -0.34 -6.68 7.83 -38.33 -0.30 -6.98 16 9 H 0.12 2.31 7.00 -52.49 -0.37 1.94 16 10 C 0.07 1.29 4.97 -17.20 -0.09 1.21 16 11 N -0.73 -13.29 11.00 55.60 0.61 -12.68 16 12 Si 0.93 14.03 29.58 -169.99 -5.03 9.00 16 13 H -0.24 -3.79 7.11 56.52 0.40 -3.39 16 14 H -0.26 -3.97 7.11 56.52 0.40 -3.57 16 15 H -0.26 -3.89 7.11 56.52 0.40 -3.48 16 16 C -0.31 -6.59 5.88 -104.95 -0.62 -7.20 16 17 C 0.33 7.29 13.90 -22.47 -0.31 6.98 16 18 N -0.53 -12.28 18.54 41.84 0.78 -11.50 16 19 C 0.30 6.82 14.81 -22.45 -0.33 6.49 16 20 N -0.53 -12.46 18.54 41.87 0.78 -11.68 16 21 C 0.06 1.04 6.61 -84.56 -0.56 0.48 16 22 C 0.28 5.08 14.33 -22.47 -0.32 4.75 16 23 N -0.41 -7.66 18.54 41.84 0.78 -6.89 16 24 N -0.37 -5.76 10.34 -6.99 -0.07 -5.83 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.41 7.88 7.66 -40.82 -0.31 7.57 16 30 H 0.30 5.07 8.29 -40.82 -0.34 4.73 16 LS Contribution 302.99 15.07 4.57 4.57 Total: -1.00 -25.48 302.99 -3.51 -28.99 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -1.50 Total: 5.21 kcal Atomic # 6 Polarization: 24.71 SS G_CDS: -4.27 Total: 20.44 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: 2.73 Total: -68.20 kcal Atomic # 14 Polarization: 14.03 SS G_CDS: -5.03 Total: 9.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -25.48 -3.51 -28.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.439 kcal (2) G-P(sol) polarization free energy of solvation -25.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds