Wall clock time and date at job start Tue Mar 31 2020 01:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38665 * 119.83229 * 2 1 4 4 N 1.32098 * 120.35119 * 179.97438 * 3 2 1 5 5 C 1.32718 * 120.00393 * 0.02562 * 4 3 2 6 6 N 1.38600 * 120.17259 * 179.97438 * 5 4 3 7 7 C 1.38433 * 119.99499 * 355.10320 * 6 5 4 8 8 C 1.38945 * 120.00156 * 299.85269 * 7 6 5 9 9 H 1.07996 * 120.00390 * 159.32904 * 8 7 6 10 10 C 1.40865 * 119.99873 * 339.32596 * 8 7 6 11 11 N 1.30326 * 120.00221 * 350.18776 * 10 8 7 12 12 Si 1.86805 * 120.00005 * 170.18278 * 10 8 7 13 13 H 1.48506 * 109.46700 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47092 * 120.00240 * 12 10 8 15 15 H 1.48501 * 109.47151 * 240.00175 * 12 10 8 16 16 C 1.41133 * 119.99935 * 119.85555 * 7 6 5 17 17 C 1.43194 * 120.00098 * 185.91169 * 16 7 6 18 18 N 7.87414 * 148.69278 * 11.99838 * 2 1 3 19 19 C 1.43199 * 119.99978 * 5.91473 * 16 7 6 20 20 N 6.77756 * 154.81439 * 88.20020 * 2 1 3 21 21 C 1.40509 * 119.65962 * 0.25431 * 5 4 3 22 22 C 1.43204 * 120.17125 * 179.72118 * 21 5 4 23 23 N 4.69699 * 134.13255 * 180.24609 * 2 1 3 24 24 N 1.31841 * 119.82528 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.46713 * 89.99865 * 1 2 3 26 26 H 1.09001 * 109.47404 * 209.99922 * 1 2 3 27 27 H 1.08993 * 109.46907 * 330.00344 * 1 2 3 28 28 H 1.08000 * 119.82242 * 359.97313 * 3 2 1 29 29 H 0.96997 * 120.00549 * 175.37213 * 6 5 4 30 30 H 0.96993 * 119.99948 * 185.05179 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.2029 0.0000 4 7 3.5177 1.2149 0.0005 5 6 4.1918 0.0716 0.0005 6 7 5.5778 0.0801 0.0005 7 6 6.2625 1.2788 -0.1018 8 6 6.0862 2.0865 -1.2186 9 1 6.3326 3.1369 -1.1697 10 6 5.5860 1.5354 -2.4145 11 7 5.4690 0.2432 -2.5377 12 14 5.0901 2.6566 -3.8240 13 1 5.3188 4.0714 -3.4349 14 1 5.9057 2.3352 -5.0226 15 1 3.6522 2.4544 -4.1350 16 6 7.1398 1.6805 0.9281 17 6 7.7504 2.9750 0.8843 18 7 8.2346 4.0022 0.8506 19 6 7.4194 0.7935 2.0170 20 7 7.6403 0.0906 2.8828 21 6 3.4931 -1.1475 -0.0055 22 6 4.2094 -2.3875 -0.0115 23 7 4.7776 -3.3711 -0.0145 24 7 2.1627 -1.1438 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6512 2.1349 -0.0004 29 1 6.0679 -0.7542 0.0683 30 1 5.1945 -0.1403 -3.3852 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:50 Heat of formation + Delta-G solvation = 123.259387 kcal Electronic energy + Delta-G solvation = -20331.354608 eV Core-core repulsion = 17126.572038 eV Total energy + Delta-G solvation = -3204.782570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.077 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.20223 -39.26687 -37.77329 -37.15198 -36.55540 -35.62934 -34.80304 -33.64116 -31.72855 -28.87171 -28.06979 -26.48416 -24.29395 -22.82412 -20.82768 -20.14537 -19.57922 -19.02335 -17.98013 -17.82816 -16.63873 -16.33393 -15.43896 -15.26655 -14.92062 -14.62218 -14.47595 -14.41960 -14.09441 -13.92675 -13.80985 -13.63996 -13.49813 -13.41123 -13.24744 -13.15460 -12.96092 -12.74886 -12.70578 -12.46781 -12.17399 -11.95254 -11.61236 -11.35377 -10.10764 -9.90296 -9.32255 -8.62971 -7.14765 -0.45816 0.18681 0.70561 1.36872 1.40064 1.52065 1.55906 1.84053 1.95042 2.03990 2.07614 2.20130 2.45719 2.56731 2.61744 2.93623 3.31921 3.44319 3.52933 3.76712 3.91442 4.13270 4.36975 4.56407 4.64108 5.01883 5.06390 5.08987 5.34557 5.48886 5.62701 5.80585 6.07309 6.12628 6.28557 6.53336 6.60199 6.99044 7.14813 7.33060 7.64908 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.008329 C = 0.006439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.279440 B = 3361.066432 C = 4347.420737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.015 3.985 3 C 0.150 3.850 4 N -0.489 5.489 5 C 0.430 3.570 6 N -0.624 5.624 7 C 0.367 3.633 8 C -0.334 4.334 9 H 0.111 0.889 10 C 0.049 3.951 11 N -0.735 5.735 12 Si 0.982 3.018 13 H -0.250 1.250 14 H -0.261 1.261 15 H -0.250 1.250 16 C -0.325 4.325 17 C 0.332 3.668 18 N -0.553 5.553 19 C 0.312 3.688 20 N -0.560 5.560 21 C 0.039 3.961 22 C 0.292 3.708 23 N -0.436 5.436 24 N -0.388 5.388 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.220 0.780 29 H 0.407 0.593 30 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.296 2.029 -6.933 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C -0.018 4.018 4 N -0.209 5.209 5 C 0.190 3.810 6 N -0.244 5.244 7 C 0.264 3.736 8 C -0.360 4.360 9 H 0.129 0.871 10 C -0.181 4.181 11 N -0.354 5.354 12 Si 0.801 3.199 13 H -0.173 1.173 14 H -0.185 1.185 15 H -0.174 1.174 16 C -0.344 4.344 17 C 0.026 3.974 18 N -0.236 5.236 19 C 0.007 3.993 20 N -0.244 5.244 21 C -0.106 4.106 22 C -0.024 4.024 23 N -0.115 5.115 24 N -0.104 5.104 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.237 0.763 29 H 0.244 0.756 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.246 0.873 -5.760 14.470 hybrid contribution 0.136 -0.190 -0.705 0.743 sum -13.110 0.683 -6.465 14.634 Atomic orbital electron populations 1.20671 0.84179 1.04979 1.04335 1.22655 1.00019 0.87818 1.02976 1.24570 0.88350 1.01138 0.87749 1.68379 1.09992 1.25811 1.16756 1.18665 0.85234 0.89148 0.87951 1.41300 1.01745 1.08471 1.72897 1.16699 0.85786 0.81967 0.89180 1.20459 1.24624 0.98565 0.92382 0.87119 1.27171 0.90902 0.96935 1.03083 1.69471 1.23027 1.13720 1.29152 0.85064 0.79798 0.79357 0.75728 1.17298 1.18489 1.17376 1.12833 1.26331 0.92197 1.03053 1.24705 0.90336 0.91228 0.91163 1.81057 1.16667 1.13808 1.12097 1.25427 0.90697 0.91972 0.91249 1.81112 1.16338 1.13025 1.13936 1.16225 0.90215 0.85890 1.18261 1.24937 0.92895 0.91987 0.92607 1.81181 1.09070 1.10488 1.10764 1.67919 1.04626 1.31781 1.06099 0.89189 0.90944 0.87229 0.76324 0.75579 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.18 71.24 0.73 -0.27 16 2 C 0.01 0.32 6.78 42.66 0.29 0.61 16 3 C 0.15 3.28 10.87 84.75 0.92 4.20 16 4 N -0.49 -15.35 9.04 -191.67 -1.73 -17.08 16 5 C 0.43 15.03 5.86 133.44 0.78 15.81 16 6 N -0.62 -23.95 3.23 -183.82 -0.59 -24.54 16 7 C 0.37 14.85 5.47 38.98 0.21 15.06 16 8 C -0.33 -12.76 7.83 23.08 0.18 -12.58 16 9 H 0.11 4.33 7.00 -2.91 -0.02 4.31 16 10 C 0.05 1.68 4.97 85.56 0.42 2.11 16 11 N -0.74 -25.80 11.00 21.98 0.24 -25.56 16 12 Si 0.98 26.50 29.58 68.60 2.03 28.53 16 13 H -0.25 -6.96 7.11 99.48 0.71 -6.25 16 14 H -0.26 -6.97 7.11 99.48 0.71 -6.26 16 15 H -0.25 -6.31 7.11 99.48 0.71 -5.60 16 16 C -0.32 -14.18 5.88 -20.08 -0.12 -14.30 16 17 C 0.33 15.01 13.90 88.33 1.23 16.23 16 18 N -0.55 -25.79 18.54 19.00 0.35 -25.44 16 19 C 0.31 14.36 14.81 88.32 1.31 15.67 16 20 N -0.56 -27.05 18.54 19.01 0.35 -26.70 16 21 C 0.04 1.31 6.61 40.76 0.27 1.57 16 22 C 0.29 10.68 14.33 88.33 1.27 11.94 16 23 N -0.44 -16.91 18.54 19.00 0.35 -16.56 16 24 N -0.39 -11.39 10.34 -176.04 -1.82 -13.21 16 25 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.11 0.63 8.08 -2.39 -0.02 0.61 16 28 H 0.22 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.41 16.09 7.66 -92.71 -0.71 15.38 16 30 H 0.31 9.92 8.29 -92.71 -0.77 9.15 16 Total: -1.00 -56.10 302.99 7.21 -48.89 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.54 Total: 15.62 kcal Atomic # 6 Polarization: 48.57 SS G_CDS: 7.49 Total: 56.06 kcal Atomic # 7 Polarization: -146.25 SS G_CDS: -2.85 Total: -149.09 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: 2.03 Total: 28.53 kcal Total: -56.10 7.21 -48.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.150 kcal (2) G-P(sol) polarization free energy of solvation -56.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds