Wall clock time and date at job start Tue Mar 31 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09001 * 109.46403 * 305.70564 * 3 2 1 5 5 C 1.50699 * 109.47078 * 185.70685 * 3 2 1 6 6 H 1.08000 * 119.99772 * 334.95152 * 5 3 2 7 7 C 1.37878 * 119.99877 * 154.95412 * 5 3 2 8 8 N 1.31515 * 119.99878 * 5.64564 * 7 5 3 9 9 Si 1.86798 * 120.00127 * 185.64000 * 7 5 3 10 10 H 1.48495 * 109.47417 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47310 * 300.00646 * 9 7 5 12 12 H 1.48504 * 109.46788 * 59.99930 * 9 7 5 13 13 N 1.46498 * 109.47203 * 65.70435 * 3 2 1 14 14 C 1.38323 * 120.00018 * 275.00182 * 13 3 2 15 15 N 1.32986 * 120.82584 * 0.02562 * 14 13 3 16 16 C 1.32187 * 121.02055 * 180.02562 * 15 14 13 17 17 Cl 1.73599 * 118.66330 * 180.02562 * 16 15 14 18 18 N 1.31673 * 122.67663 * 359.97438 * 16 15 14 19 19 C 1.33218 * 120.70273 * 359.97438 * 18 16 15 20 20 N 1.36763 * 134.28094 * 179.97438 * 19 18 16 21 21 H 0.97001 * 124.99133 * 0.02562 * 20 19 18 22 22 C 1.37145 * 110.02098 * 179.24865 * 20 19 18 23 23 C 1.34284 * 109.79958 * 0.68467 * 22 20 19 24 24 C 1.40308 * 120.82744 * 179.71925 * 14 13 3 25 25 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 26 26 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 28 28 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 29 29 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 30 30 H 0.97000 * 119.99960 * 355.08214 * 8 7 5 31 31 H 0.96998 * 120.00193 * 94.99911 * 13 3 2 32 32 H 1.08004 * 125.09942 * 180.09400 * 22 20 19 33 33 H 1.08004 * 126.59659 * 179.41142 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5956 1.9849 -0.8345 5 6 3.5404 1.4448 -0.1413 6 1 4.1137 0.5856 0.1740 7 6 4.1810 2.5438 -0.6731 8 7 3.4972 3.6316 -0.9538 9 14 6.0203 2.4878 -0.9947 10 1 6.4631 3.7860 -1.5636 11 1 6.7384 2.2361 0.2806 12 1 6.3216 1.3968 -1.9560 13 7 1.6670 2.0924 1.2589 14 6 0.4192 2.6737 1.3939 15 7 -0.4549 2.6518 0.3919 16 6 -1.6482 3.2065 0.5165 17 17 -2.7415 3.1417 -0.8304 18 7 -2.0418 3.8055 1.6211 19 6 -1.2365 3.8775 2.6799 20 7 -1.3510 4.4161 3.9318 21 1 -2.1336 4.8799 4.2683 22 6 -0.2034 4.1888 4.6474 23 6 0.6808 3.5208 3.8891 24 6 0.0417 3.2956 2.5937 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5324 3.6371 -0.8541 31 1 2.2951 2.1150 1.9977 32 1 -0.0325 4.5084 5.6649 33 1 1.6737 3.2108 4.1797 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161047765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:25 Heat of formation + Delta-G solvation = 71.873174 kcal Electronic energy + Delta-G solvation = -19770.545695 eV Core-core repulsion = 16664.642345 eV Total energy + Delta-G solvation = -3105.903350 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = -0.15 seconds Orbital eigenvalues (eV) -41.39345 -38.47515 -36.80830 -36.01735 -33.38544 -32.04323 -31.21144 -30.32039 -28.43954 -26.45365 -23.37562 -23.16926 -22.53854 -20.47507 -20.05359 -18.99450 -17.19546 -17.11061 -15.93666 -15.35444 -14.90178 -14.58948 -14.09764 -13.85623 -13.57458 -13.19888 -13.06460 -12.98695 -12.83136 -12.32263 -11.53379 -11.10642 -11.02448 -10.85732 -10.78720 -10.66024 -10.34059 -10.30252 -10.18165 -9.72528 -8.79164 -8.78051 -8.68941 -8.58611 -8.35477 -6.95104 -6.60333 -4.42624 1.39780 1.82060 1.95397 2.87126 3.09109 3.31795 3.34662 3.53712 3.99719 4.35478 4.39617 4.87890 4.99924 5.12450 5.30461 5.42499 5.69475 5.84661 6.01152 6.04859 6.20678 6.37953 6.56485 6.67872 6.82893 6.94068 6.97515 7.09735 7.20306 7.30271 7.59449 7.77562 8.16301 8.19997 8.41977 8.61820 8.89276 9.38203 10.77099 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.006525 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.557656 B = 4290.118917 C = 5119.353233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.241 3.759 4 H 0.063 0.937 5 C -0.610 4.610 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.883 5.883 9 Si 1.069 2.931 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.655 5.655 14 C 0.503 3.497 15 N -0.578 5.578 16 C 0.435 3.565 17 Cl 0.004 6.996 18 N -0.588 5.588 19 C 0.351 3.649 20 N -0.571 5.571 21 H 0.416 0.584 22 C 0.017 3.983 23 C -0.148 4.148 24 C -0.281 4.281 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.279 0.721 31 H 0.399 0.601 32 H 0.175 0.825 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 -0.278 8.673 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C 0.141 3.859 4 H 0.081 0.919 5 C -0.649 4.649 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.516 5.516 9 Si 0.897 3.103 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.210 1.210 13 N -0.280 5.280 14 C 0.251 3.749 15 N -0.312 5.312 16 C 0.136 3.864 17 Cl 0.031 6.969 18 N -0.321 5.321 19 C 0.113 3.887 20 N -0.178 5.178 21 H 0.253 0.747 22 C -0.107 4.107 23 C -0.175 4.175 24 C -0.295 4.295 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.236 0.764 32 H 0.192 0.808 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.709 0.559 7.220 9.872 hybrid contribution -1.076 -0.579 1.599 2.013 sum -7.786 -0.020 8.819 11.764 Atomic orbital electron populations 1.21847 0.96937 0.98507 1.02237 1.21811 0.94338 0.98843 1.00494 1.19147 0.95023 0.88857 0.82829 0.91934 1.22128 0.91181 1.05224 1.46318 0.92462 1.26037 1.07171 0.91846 0.92712 1.70749 1.10256 1.27291 1.43275 0.83538 0.73775 0.76272 0.76758 1.20669 1.21270 1.21038 1.47131 1.09021 1.53110 1.18718 1.18213 0.86871 0.84510 0.85324 1.67687 1.03124 1.28924 1.31456 1.21813 0.87370 0.90289 0.86907 1.98379 1.60709 1.96699 1.41080 1.66448 1.37614 1.28624 0.99414 1.17681 0.90210 0.94280 0.86495 1.41355 1.16732 1.50243 1.09492 0.74660 1.21657 0.86089 1.05070 0.97915 1.21454 0.99843 1.04417 0.91745 1.19956 0.98486 1.13803 0.97279 0.92145 0.95393 0.93782 0.92120 0.93853 0.90954 0.76371 0.80801 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.47 37.16 0.31 -2.36 16 2 C -0.12 -2.41 5.58 -26.73 -0.15 -2.56 16 3 C 0.24 5.65 1.81 -69.08 -0.13 5.52 16 4 H 0.06 1.67 6.37 -51.93 -0.33 1.33 16 5 C -0.61 -15.52 8.50 -34.44 -0.29 -15.81 16 6 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16 8 N -0.88 -25.21 13.63 55.43 0.76 -24.45 16 9 Si 1.07 23.32 29.91 -169.99 -5.08 18.24 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.65 -14.04 5.15 -54.78 -0.28 -14.32 16 14 C 0.50 10.56 6.11 -154.73 -0.95 9.61 16 15 N -0.58 -12.34 6.60 -10.74 -0.07 -12.41 16 16 C 0.43 8.67 8.15 -91.92 -0.75 7.93 16 17 Cl 0.00 0.06 29.25 -51.86 -1.52 -1.45 16 18 N -0.59 -11.31 10.43 -10.96 -0.11 -11.42 16 19 C 0.35 6.28 8.48 -155.86 -1.32 4.96 16 20 N -0.57 -7.52 6.03 -12.13 -0.07 -7.60 16 21 H 0.42 4.12 8.96 -40.82 -0.37 3.76 16 22 C 0.02 0.20 11.83 -16.57 -0.20 0.00 16 23 C -0.15 -2.19 10.97 -37.78 -0.41 -2.61 16 24 C -0.28 -5.27 6.32 -104.99 -0.66 -5.93 16 25 H 0.06 1.22 7.74 -51.93 -0.40 0.82 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.89 5.57 -51.93 -0.29 0.60 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.28 8.16 6.78 -40.82 -0.28 7.89 16 31 H 0.40 8.13 8.52 -40.82 -0.35 7.78 16 32 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 33 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 296.29 15.07 4.47 4.47 Total: -1.00 -29.68 296.29 -9.89 -39.57 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -3.33 Total: 9.88 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -4.64 Total: -0.50 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: 0.22 Total: -70.21 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.08 Total: 18.24 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.52 Total: -1.45 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.68 -9.89 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161047765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.448 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.15 seconds