Wall clock time and date at job start Tue Mar 31 2020 01:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09001 * 109.46403 * 305.70564 * 3 2 1 5 5 C 1.50699 * 109.47078 * 185.70685 * 3 2 1 6 6 H 1.08000 * 119.99772 * 334.95152 * 5 3 2 7 7 C 1.37878 * 119.99877 * 154.95412 * 5 3 2 8 8 N 1.31515 * 119.99878 * 5.64564 * 7 5 3 9 9 Si 1.86798 * 120.00127 * 185.64000 * 7 5 3 10 10 H 1.48495 * 109.47417 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47310 * 300.00646 * 9 7 5 12 12 H 1.48504 * 109.46788 * 59.99930 * 9 7 5 13 13 N 1.46498 * 109.47203 * 65.70435 * 3 2 1 14 14 C 1.38323 * 120.00018 * 275.00182 * 13 3 2 15 15 N 1.32986 * 120.82584 * 0.02562 * 14 13 3 16 16 C 1.32187 * 121.02055 * 180.02562 * 15 14 13 17 17 Cl 1.73599 * 118.66330 * 180.02562 * 16 15 14 18 18 N 1.31673 * 122.67663 * 359.97438 * 16 15 14 19 19 C 1.33218 * 120.70273 * 359.97438 * 18 16 15 20 20 N 1.36763 * 134.28094 * 179.97438 * 19 18 16 21 21 H 0.97001 * 124.99133 * 0.02562 * 20 19 18 22 22 C 1.37145 * 110.02098 * 179.24865 * 20 19 18 23 23 C 1.34284 * 109.79958 * 0.68467 * 22 20 19 24 24 C 1.40308 * 120.82744 * 179.71925 * 14 13 3 25 25 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 26 26 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 28 28 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 29 29 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 30 30 H 0.97000 * 119.99960 * 355.08214 * 8 7 5 31 31 H 0.96998 * 120.00193 * 94.99911 * 13 3 2 32 32 H 1.08004 * 125.09942 * 180.09400 * 22 20 19 33 33 H 1.08004 * 126.59659 * 179.41142 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5956 1.9849 -0.8345 5 6 3.5404 1.4448 -0.1413 6 1 4.1137 0.5856 0.1740 7 6 4.1810 2.5438 -0.6731 8 7 3.4972 3.6316 -0.9538 9 14 6.0203 2.4878 -0.9947 10 1 6.4631 3.7860 -1.5636 11 1 6.7384 2.2361 0.2806 12 1 6.3216 1.3968 -1.9560 13 7 1.6670 2.0924 1.2589 14 6 0.4192 2.6737 1.3939 15 7 -0.4549 2.6518 0.3919 16 6 -1.6482 3.2065 0.5165 17 17 -2.7415 3.1417 -0.8304 18 7 -2.0418 3.8055 1.6211 19 6 -1.2365 3.8775 2.6799 20 7 -1.3510 4.4161 3.9318 21 1 -2.1336 4.8799 4.2683 22 6 -0.2034 4.1888 4.6474 23 6 0.6808 3.5208 3.8891 24 6 0.0417 3.2956 2.5937 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5324 3.6371 -0.8541 31 1 2.2951 2.1150 1.9977 32 1 -0.0325 4.5084 5.6649 33 1 1.6737 3.2108 4.1797 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161047765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:24 Heat of formation + Delta-G solvation = 54.284240 kcal Electronic energy + Delta-G solvation = -19771.308408 eV Core-core repulsion = 16664.642345 eV Total energy + Delta-G solvation = -3106.666063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.71678 -39.86726 -38.39005 -37.50023 -35.08334 -33.82412 -32.73536 -31.61314 -29.82480 -28.22763 -25.15681 -24.61292 -24.06346 -21.90946 -21.48119 -20.41778 -18.98667 -18.61793 -17.24756 -16.81794 -16.45318 -16.10739 -15.70774 -15.58866 -15.10766 -14.77379 -14.38280 -14.36212 -14.04292 -14.01614 -13.10393 -12.84370 -12.56007 -12.49118 -12.40307 -12.15911 -11.94685 -11.87930 -11.77580 -11.41343 -10.70127 -10.68594 -10.14429 -10.05777 -9.74039 -8.69380 -8.38535 -6.49732 -0.01318 0.39873 0.49560 1.57335 1.62417 1.73267 1.82905 1.92192 2.39901 2.55722 2.90692 3.25468 3.62904 3.72919 3.91952 4.26694 4.30927 4.34757 4.39102 4.60963 4.76056 4.94577 5.08976 5.14006 5.22388 5.34070 5.39886 5.56179 5.72491 5.84459 5.90879 6.15188 6.41789 6.47172 6.59797 6.90121 7.34598 7.39538 8.68571 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.006525 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.557656 B = 4290.118917 C = 5119.353233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C 0.251 3.749 4 H 0.023 0.977 5 C -0.615 4.615 6 H 0.060 0.940 7 C -0.014 4.014 8 N -0.917 5.917 9 Si 1.116 2.884 10 H -0.291 1.291 11 H -0.266 1.266 12 H -0.270 1.270 13 N -0.663 5.663 14 C 0.482 3.518 15 N -0.598 5.598 16 C 0.409 3.591 17 Cl 0.019 6.981 18 N -0.584 5.584 19 C 0.322 3.678 20 N -0.553 5.553 21 H 0.435 0.565 22 C 0.065 3.935 23 C -0.184 4.184 24 C -0.293 4.293 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.260 0.740 31 H 0.403 0.597 32 H 0.234 0.766 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.307 -0.258 11.264 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.150 3.850 4 H 0.041 0.959 5 C -0.653 4.653 6 H 0.078 0.922 7 C -0.216 4.216 8 N -0.551 5.551 9 Si 0.937 3.063 10 H -0.217 1.217 11 H -0.191 1.191 12 H -0.195 1.195 13 N -0.289 5.289 14 C 0.232 3.768 15 N -0.332 5.332 16 C 0.111 3.889 17 Cl 0.047 6.953 18 N -0.316 5.316 19 C 0.084 3.916 20 N -0.161 5.161 21 H 0.276 0.724 22 C -0.060 4.060 23 C -0.210 4.210 24 C -0.308 4.308 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.241 0.759 32 H 0.251 0.749 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.737 0.586 9.849 11.947 hybrid contribution -1.234 -0.544 0.943 1.646 sum -7.971 0.042 10.791 13.416 Atomic orbital electron populations 1.21670 0.95795 0.99561 1.01009 1.21730 0.95268 0.97227 1.00688 1.18819 0.93901 0.89772 0.82544 0.95890 1.22404 0.92316 1.04973 1.45645 0.92198 1.27355 1.10723 0.91466 0.92105 1.70881 1.09213 1.28714 1.46338 0.82947 0.69472 0.76100 0.77738 1.21714 1.19053 1.19509 1.46382 1.09837 1.54734 1.17997 1.18351 0.86591 0.85331 0.86510 1.67604 1.03823 1.29525 1.32278 1.22051 0.87600 0.91347 0.87897 1.98366 1.59913 1.96692 1.40371 1.66495 1.37753 1.27759 0.99604 1.18000 0.90107 0.95632 0.87862 1.41496 1.17968 1.48953 1.07709 0.72414 1.22593 0.83701 1.00656 0.99059 1.21765 1.01588 1.06995 0.90622 1.20319 0.99495 1.12998 0.97964 0.93552 0.92991 0.94832 0.92320 0.93006 0.92913 0.75947 0.74929 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 8.47 71.98 0.61 -4.21 16 2 C -0.11 -4.64 5.58 30.59 0.17 -4.46 16 3 C 0.25 12.16 1.81 44.25 0.08 12.24 16 4 H 0.02 1.30 6.37 -2.39 -0.02 1.29 16 5 C -0.61 -31.80 8.50 25.60 0.22 -31.58 16 6 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 7 C -0.01 -0.74 5.45 84.65 0.46 -0.28 16 8 N -0.92 -54.22 13.63 21.45 0.29 -53.92 16 9 Si 1.12 47.05 29.91 68.60 2.05 49.10 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 12 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 13 N -0.66 -29.25 5.15 -327.22 -1.68 -30.93 16 14 C 0.48 20.78 6.11 133.41 0.82 21.60 16 15 N -0.60 -26.48 6.60 -187.89 -1.24 -27.72 16 16 C 0.41 16.68 8.15 180.80 1.47 18.15 16 17 Cl 0.02 0.66 29.25 -2.72 -0.08 0.58 16 18 N -0.58 -22.32 10.43 -188.59 -1.97 -24.29 16 19 C 0.32 11.12 8.48 133.95 1.14 12.26 16 20 N -0.55 -12.61 6.03 -192.29 -1.16 -13.77 16 21 H 0.44 6.83 8.96 -92.71 -0.83 6.00 16 22 C 0.06 1.22 11.83 82.96 0.98 2.20 16 23 C -0.18 -4.99 10.97 23.43 0.26 -4.73 16 24 C -0.29 -10.84 6.32 -20.10 -0.13 -10.97 16 25 H 0.05 1.92 7.74 -2.38 -0.02 1.90 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.03 1.37 5.57 -2.39 -0.01 1.36 16 28 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.26 16.09 6.78 -92.71 -0.63 15.46 16 31 H 0.40 16.80 8.52 -92.71 -0.79 16.01 16 32 H 0.23 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -67.58 296.29 1.99 -65.59 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.30 Total: 25.17 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 6.08 Total: 10.21 kcal Atomic # 7 Polarization: -144.88 SS G_CDS: -5.76 Total: -150.64 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.05 Total: 49.10 kcal Atomic # 17 Polarization: 0.66 SS G_CDS: -0.08 Total: 0.58 kcal Total: -67.58 1.99 -65.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161047765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.874 kcal (2) G-P(sol) polarization free energy of solvation -67.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds