Wall clock time and date at job start Tue Mar 31 2020 01:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.41074 * 120.00394 * 275.00073 * 13 3 2 15 15 C 1.36241 * 127.18994 * 359.68454 * 14 13 3 16 16 N 1.33851 * 110.98458 * 179.85250 * 15 14 13 17 17 C 1.31316 * 111.97247 * 0.43436 * 16 15 14 18 18 N 1.37810 * 135.89930 * 179.71744 * 17 16 15 19 19 H 0.97000 * 120.33261 * 359.97438 * 18 17 16 20 20 C 1.34131 * 119.32730 * 179.97438 * 18 17 16 21 21 N 1.30863 * 123.26620 * 0.04121 * 20 18 17 22 22 C 1.33128 * 122.73377 * 359.97438 * 21 20 18 23 23 Cl 1.73608 * 120.49957 * 180.02562 * 22 21 20 24 24 C 1.38718 * 118.99779 * 359.97438 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.08001 * 124.50970 * 359.97438 * 15 14 13 33 33 H 1.08003 * 118.36719 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.3783 2.6909 1.3724 15 6 -0.5977 2.7458 0.4235 16 7 -1.6798 3.3841 0.8852 17 6 -1.5169 3.7965 2.1213 18 7 -2.2764 4.4830 3.0437 19 1 -3.1717 4.7799 2.8174 20 6 -1.7651 4.7365 4.2576 21 7 -0.5651 4.3637 4.6231 22 6 0.2579 3.6959 3.8175 23 17 1.8385 3.2292 4.3632 24 6 -0.1670 3.3777 2.5359 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 -0.5107 2.3281 -0.5687 33 1 -2.3739 5.2752 4.9686 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049623.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:39 Heat of formation + Delta-G solvation = 90.382122 kcal Electronic energy + Delta-G solvation = -19481.352271 eV Core-core repulsion = 16376.251529 eV Total energy + Delta-G solvation = -3105.100741 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31224 -38.49741 -36.92800 -35.85426 -34.45253 -32.44694 -30.93840 -29.70793 -28.09750 -25.85316 -24.55224 -23.06721 -22.69033 -20.81022 -19.34916 -18.23504 -17.94299 -16.69492 -16.45291 -15.51121 -15.36486 -14.94368 -14.25436 -13.93301 -13.50352 -13.16289 -12.82944 -12.54369 -12.35801 -11.99137 -11.69426 -11.36572 -11.25461 -10.91228 -10.86221 -10.69386 -10.28654 -10.19870 -10.06631 -9.64144 -9.22035 -9.10536 -8.82839 -8.39842 -8.22506 -6.13335 -6.02832 -4.19589 0.20081 1.67288 1.69847 2.44008 3.25755 3.32698 3.35634 3.54270 3.95106 3.95376 4.20940 4.44320 4.61014 4.87940 5.10388 5.20161 5.52454 5.69124 6.31587 6.38098 6.49203 6.52800 6.62316 6.81347 7.03195 7.06943 7.30136 7.33614 7.56071 7.62299 7.72092 7.89094 8.13344 8.41924 8.44089 8.77929 8.98143 9.47204 10.93646 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.005509 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.709042 B = 5081.560379 C = 5916.010747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.281 3.719 4 H 0.039 0.961 5 C -0.529 4.529 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.176 3.824 15 C -0.068 4.068 16 N -0.460 5.460 17 C 0.199 3.801 18 N -0.537 5.537 19 H 0.423 0.577 20 C 0.383 3.617 21 N -0.561 5.561 22 C 0.280 3.720 23 Cl -0.013 7.013 24 C -0.216 4.216 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.033 0.967 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.166 0.834 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 7.421 12.241 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.178 3.822 4 H 0.057 0.943 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.330 5.330 14 C 0.064 3.936 15 C -0.213 4.213 16 N -0.178 5.178 17 C -0.059 4.059 18 N -0.147 5.147 19 H 0.262 0.738 20 C 0.099 3.901 21 N -0.287 5.287 22 C 0.126 3.874 23 Cl 0.016 6.984 24 C -0.231 4.231 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.222 0.778 32 H 0.183 0.817 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.502 7.331 11.898 17.481 hybrid contribution 1.490 -0.303 -0.121 1.525 sum -9.012 7.028 11.777 16.411 Atomic orbital electron populations 1.22083 0.98816 0.99033 1.00681 1.22028 0.92328 1.00324 1.02405 1.18712 0.94317 0.88660 0.80487 0.94292 1.21217 0.90822 1.38585 1.06127 0.92217 1.24852 0.98525 0.94800 0.95370 1.69875 1.35070 1.37893 1.09387 0.86477 0.85028 0.78475 0.77333 1.20567 1.21060 1.19881 1.45294 1.10741 1.59126 1.17870 1.19157 0.88675 0.94495 0.91247 1.21802 0.89267 1.09782 1.00479 1.68876 1.28573 1.13916 1.06387 1.19371 0.88907 1.05233 0.92363 1.41672 1.17669 1.44515 1.10812 0.73838 1.24429 0.90578 0.91253 0.83857 1.67310 1.03948 1.22144 1.35319 1.21515 0.87720 0.90064 0.88119 1.98436 1.20695 1.88895 1.90402 1.21279 0.97645 1.10178 0.94032 0.93549 0.93393 0.95365 0.94841 0.88293 0.92603 0.77813 0.81652 0.76881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.33 37.16 0.31 -2.83 16 2 C -0.13 -3.14 5.45 -26.74 -0.15 -3.29 16 3 C 0.28 6.94 2.23 -69.08 -0.15 6.79 16 4 H 0.04 1.06 7.19 -51.93 -0.37 0.69 16 5 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.36 11.30 55.43 0.63 -23.73 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.71 -15.50 5.25 -51.66 -0.27 -15.78 16 14 C 0.18 3.64 6.04 -81.34 -0.49 3.15 16 15 C -0.07 -1.41 8.73 -17.39 -0.15 -1.56 16 16 N -0.46 -8.70 11.08 -10.75 -0.12 -8.82 16 17 C 0.20 3.21 8.73 -153.74 -1.34 1.86 16 18 N -0.54 -5.17 5.37 -11.95 -0.06 -5.23 16 19 H 0.42 2.37 8.93 -40.82 -0.36 2.00 16 20 C 0.38 3.08 12.25 -90.90 -1.11 1.97 16 21 N -0.56 -7.00 10.30 -11.22 -0.12 -7.11 16 22 C 0.28 4.40 7.38 -16.81 -0.12 4.28 16 23 Cl -0.01 -0.20 27.84 -51.86 -1.44 -1.65 16 24 C -0.22 -3.88 6.47 -103.06 -0.67 -4.55 16 25 H 0.05 0.96 6.66 -51.93 -0.35 0.62 16 26 H 0.05 1.01 5.39 -51.93 -0.28 0.73 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.39 8.23 7.29 -40.82 -0.30 7.94 16 32 H 0.17 3.53 5.48 -52.49 -0.29 3.24 16 33 H 0.22 0.34 8.06 -52.48 -0.42 -0.08 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -32.07 288.90 -9.40 -41.47 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -3.07 Total: 7.59 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -4.28 Total: -6.87 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.06 Total: -60.67 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.44 Total: -1.65 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.07 -9.40 -41.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049623.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.848 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds