Wall clock time and date at job start Tue Mar 31 2020 01:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.41074 * 120.00394 * 275.00073 * 13 3 2 15 15 C 1.36241 * 127.18994 * 359.68454 * 14 13 3 16 16 N 1.33851 * 110.98458 * 179.85250 * 15 14 13 17 17 C 1.31316 * 111.97247 * 0.43436 * 16 15 14 18 18 N 1.37810 * 135.89930 * 179.71744 * 17 16 15 19 19 H 0.97000 * 120.33261 * 359.97438 * 18 17 16 20 20 C 1.34131 * 119.32730 * 179.97438 * 18 17 16 21 21 N 1.30863 * 123.26620 * 0.04121 * 20 18 17 22 22 C 1.33128 * 122.73377 * 359.97438 * 21 20 18 23 23 Cl 1.73608 * 120.49957 * 180.02562 * 22 21 20 24 24 C 1.38718 * 118.99779 * 359.97438 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.08001 * 124.50970 * 359.97438 * 15 14 13 33 33 H 1.08003 * 118.36719 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.3783 2.6909 1.3724 15 6 -0.5977 2.7458 0.4235 16 7 -1.6798 3.3841 0.8852 17 6 -1.5169 3.7965 2.1213 18 7 -2.2764 4.4830 3.0437 19 1 -3.1717 4.7799 2.8174 20 6 -1.7651 4.7365 4.2576 21 7 -0.5651 4.3637 4.6231 22 6 0.2579 3.6959 3.8175 23 17 1.8385 3.2292 4.3632 24 6 -0.1670 3.3777 2.5359 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 -0.5107 2.3281 -0.5687 33 1 -2.3739 5.2752 4.9686 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049623.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:38 Heat of formation + Delta-G solvation = 68.867667 kcal Electronic energy + Delta-G solvation = -19482.285207 eV Core-core repulsion = 16376.251529 eV Total energy + Delta-G solvation = -3106.033678 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48309 -39.76375 -38.14890 -37.55414 -35.56431 -34.33301 -32.64875 -30.96117 -29.75526 -27.55355 -25.71387 -24.81525 -24.00302 -22.38317 -20.85550 -19.45341 -19.26749 -18.30657 -17.75704 -17.00693 -16.64043 -16.56233 -15.84534 -15.41670 -15.08985 -14.67736 -14.11699 -13.97635 -13.83364 -13.55512 -13.39824 -13.15450 -12.74930 -12.67866 -12.56583 -12.09445 -12.02968 -11.84702 -11.57204 -11.28636 -11.03301 -10.64988 -10.53671 -10.25689 -9.50597 -8.16290 -7.58174 -6.30855 -0.92636 0.49256 0.62731 1.42249 1.42642 1.48628 1.53078 2.31196 2.37904 2.55107 2.81097 3.08995 3.13394 3.50133 3.79183 4.05788 4.35303 4.37540 4.53667 4.63335 4.76282 4.99584 5.09336 5.25650 5.38811 5.43849 5.60636 5.71618 5.78046 5.90935 6.06383 6.17211 6.56658 6.58419 6.89804 7.04110 7.30741 7.42339 8.89344 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.005509 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.709042 B = 5081.560379 C = 5916.010747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.292 3.708 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.716 5.716 14 C 0.150 3.850 15 C -0.087 4.087 16 N -0.490 5.490 17 C 0.222 3.778 18 N -0.519 5.519 19 H 0.449 0.551 20 C 0.423 3.577 21 N -0.575 5.575 22 C 0.301 3.699 23 Cl -0.016 7.016 24 C -0.264 4.264 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.142 0.858 33 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.867 9.176 15.185 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C 0.189 3.811 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.196 1.196 13 N -0.343 5.343 14 C 0.041 3.959 15 C -0.231 4.231 16 N -0.209 5.209 17 C -0.036 4.036 18 N -0.130 5.130 19 H 0.292 0.708 20 C 0.140 3.860 21 N -0.301 5.301 22 C 0.144 3.856 23 Cl 0.014 6.986 24 C -0.279 4.279 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.223 0.777 32 H 0.159 0.841 33 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges -12.090 9.131 14.859 21.221 hybrid contribution 1.753 -0.636 -0.752 2.011 sum -10.337 8.495 14.107 19.443 Atomic orbital electron populations 1.21898 0.96757 0.99881 1.00434 1.21850 0.94098 0.99571 1.00685 1.18296 0.93214 0.88747 0.80869 0.97940 1.21529 0.92023 1.38739 1.06343 0.92526 1.25636 1.02855 0.94374 0.94991 1.70006 1.36737 1.38356 1.09754 0.85480 0.79756 0.78596 0.77324 1.19833 1.20661 1.19559 1.44868 1.11879 1.60837 1.16764 1.19238 0.87977 0.95848 0.92867 1.21522 0.90553 1.11102 0.99910 1.68823 1.28071 1.16019 1.08022 1.19626 0.88893 1.03188 0.91889 1.41883 1.18334 1.42796 1.09961 0.70809 1.26154 0.89207 0.87206 0.83401 1.67479 1.05360 1.22427 1.34823 1.21712 0.87922 0.88444 0.87529 1.98440 1.21180 1.88857 1.90167 1.21215 0.98926 1.13098 0.94660 0.94158 0.93351 0.93687 0.95346 0.90850 0.92526 0.77743 0.84091 0.69043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.33 71.98 0.60 -5.25 16 2 C -0.12 -6.18 5.45 30.59 0.17 -6.01 16 3 C 0.29 15.40 2.23 44.24 0.10 15.50 16 4 H 0.00 0.17 7.19 -2.39 -0.02 0.15 16 5 C -0.55 -30.51 8.73 25.60 0.22 -30.29 16 6 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -52.11 11.30 21.45 0.24 -51.87 16 9 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 N -0.72 -33.19 5.25 -317.36 -1.67 -34.85 16 14 C 0.15 6.47 6.04 39.11 0.24 6.71 16 15 C -0.09 -3.80 8.73 83.92 0.73 -3.07 16 16 N -0.49 -18.71 11.08 -187.94 -2.08 -20.79 16 17 C 0.22 6.76 8.73 135.95 1.19 7.95 16 18 N -0.52 -7.40 5.37 -191.73 -1.03 -8.43 16 19 H 0.45 2.44 8.93 -92.71 -0.83 1.61 16 20 C 0.42 4.02 12.25 180.44 2.21 6.23 16 21 N -0.58 -11.71 10.30 -189.42 -1.95 -13.66 16 22 C 0.30 8.84 7.38 84.61 0.62 9.47 16 23 Cl -0.02 -0.46 27.84 -2.72 -0.08 -0.54 16 24 C -0.26 -9.30 6.47 -18.85 -0.12 -9.42 16 25 H 0.04 1.79 6.66 -2.39 -0.02 1.77 16 26 H 0.05 2.13 5.39 -2.39 -0.01 2.11 16 27 H 0.04 1.77 8.14 -2.38 -0.02 1.76 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 4.06 5.95 -2.39 -0.01 4.05 16 30 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.39 17.28 7.29 -92.71 -0.68 16.60 16 32 H 0.14 6.63 5.48 -2.91 -0.02 6.61 16 33 H 0.29 -1.92 8.06 -2.91 -0.02 -1.95 16 Total: -1.00 -76.16 288.90 1.55 -74.60 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.31 Total: 16.50 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 6.40 Total: -6.53 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -6.49 Total: -129.60 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -76.16 1.55 -74.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049623.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.472 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds