Wall clock time and date at job start Tue Mar 31 2020 01:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.39080 * 120.00505 * 275.00116 * 13 3 2 15 15 C 1.39023 * 120.97661 * 0.02562 * 14 13 3 16 16 C 1.38430 * 119.44072 * 180.02562 * 15 14 13 17 17 Cl 1.73597 * 119.29863 * 180.02562 * 16 15 14 18 18 N 1.31903 * 121.39904 * 0.02562 * 16 15 14 19 19 C 1.32583 * 121.74496 * 359.97438 * 18 16 15 20 20 N 1.37783 * 133.70970 * 179.97438 * 19 18 16 21 21 H 0.96997 * 126.28001 * 359.96035 * 20 19 18 22 22 C 1.36238 * 107.43278 * 179.97438 * 20 19 18 23 23 N 1.30069 * 109.99391 * 0.02562 * 22 20 19 24 24 C 1.35672 * 109.47975 * 359.73331 * 23 22 20 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.08002 * 120.28131 * 359.97438 * 15 14 13 33 33 H 1.07996 * 125.00114 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.3962 2.6825 1.3708 15 6 -0.5077 2.6572 0.3149 16 6 -1.7493 3.2499 0.4678 17 17 -2.8755 3.2156 -0.8529 18 7 -2.0948 3.8402 1.5956 19 6 -1.2733 3.8943 2.6348 20 7 -1.3717 4.4325 3.8993 21 1 -2.1363 4.9049 4.2641 22 6 -0.1980 4.1794 4.5431 23 7 0.6075 3.5256 3.7587 24 6 0.0012 3.3119 2.5640 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 -0.2432 2.1799 -0.6172 33 1 0.0302 4.4785 5.5555 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:34 Heat of formation + Delta-G solvation = 76.462547 kcal Electronic energy + Delta-G solvation = -19564.198166 eV Core-core repulsion = 16458.493827 eV Total energy + Delta-G solvation = -3105.704340 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.97652 -38.52993 -36.78280 -35.87204 -33.59872 -32.24770 -31.12038 -29.93831 -28.82135 -26.58690 -23.46326 -23.08955 -22.68190 -21.05800 -19.85329 -18.71122 -17.18649 -16.78645 -16.30324 -15.48023 -15.12915 -14.56959 -14.38312 -14.12336 -13.88514 -13.53979 -12.96327 -12.71668 -12.15956 -11.85126 -11.38735 -11.20778 -11.02363 -10.99220 -10.94363 -10.83799 -10.65872 -10.30189 -10.23995 -9.79663 -9.34755 -9.08768 -8.95468 -8.52543 -8.21490 -6.84595 -6.23902 -4.33005 1.22410 1.80365 1.99326 2.98026 3.00546 3.21786 3.26930 3.28971 4.02879 4.15414 4.31809 4.39264 4.95495 5.08586 5.15707 5.31393 5.72298 6.03101 6.07106 6.16711 6.23290 6.34096 6.41712 6.75505 6.85755 6.94250 7.09306 7.24512 7.35278 7.56942 7.67699 7.91398 7.93231 8.13018 8.16264 8.45238 8.74287 9.34104 10.81580 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.005784 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.945472 B = 4840.050332 C = 5917.445119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C 0.264 3.736 4 H 0.048 0.952 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.677 5.677 14 C 0.341 3.659 15 C -0.274 4.274 16 C 0.263 3.737 17 Cl -0.039 7.039 18 N -0.555 5.555 19 C 0.298 3.702 20 N -0.592 5.592 21 H 0.423 0.577 22 C 0.233 3.767 23 N -0.465 5.465 24 C -0.082 4.082 25 H 0.043 0.957 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.105 0.895 30 H 0.267 0.733 31 H 0.404 0.596 32 H 0.161 0.839 33 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 5.202 8.344 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.171 4.171 3 C 0.162 3.838 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.294 5.294 14 C 0.215 3.785 15 C -0.306 4.306 16 C 0.093 3.907 17 Cl -0.011 7.011 18 N -0.278 5.278 19 C 0.061 3.939 20 N -0.209 5.209 21 H 0.262 0.738 22 C -0.055 4.055 23 N -0.184 5.184 24 C -0.205 4.205 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.239 0.761 32 H 0.178 0.822 33 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -8.697 5.024 8.101 12.904 hybrid contribution 0.611 0.172 0.095 0.642 sum -8.086 5.196 8.196 12.631 Atomic orbital electron populations 1.22212 0.98722 0.99587 1.00526 1.22033 0.92342 0.99693 1.03072 1.19046 0.95238 0.89217 0.80276 0.93397 1.21119 0.90283 1.39431 1.06555 0.91900 1.24848 0.98844 0.94499 0.95208 1.69839 1.35429 1.37380 1.09364 0.86471 0.84527 0.78447 0.77517 1.20075 1.21036 1.20100 1.45763 1.11104 1.53977 1.18538 1.17191 0.86524 0.86095 0.88679 1.21186 0.93668 1.13578 1.02166 1.20607 0.88507 0.93879 0.87660 1.98373 1.62549 1.96900 1.43265 1.65424 1.36315 1.26960 0.99071 1.18150 0.91770 0.97081 0.86865 1.42708 1.17687 1.49908 1.10554 0.73788 1.25078 0.81296 0.99667 0.99441 1.70171 1.30407 1.16475 1.01307 1.19073 0.94936 1.11497 0.95040 0.93766 0.94791 0.92992 0.94390 0.87740 0.92306 0.76093 0.82164 0.76647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.23 37.16 0.31 -2.67 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.26 6.10 2.20 -69.08 -0.15 5.94 16 4 H 0.05 1.20 6.55 -51.93 -0.34 0.86 16 5 C -0.54 -13.58 8.73 -34.44 -0.30 -13.88 16 6 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.23 11.29 55.43 0.63 -22.60 16 9 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.68 -14.00 5.17 -52.97 -0.27 -14.27 16 14 C 0.34 6.67 5.54 -83.40 -0.46 6.21 16 15 C -0.27 -5.17 6.55 -39.22 -0.26 -5.42 16 16 C 0.26 4.68 7.26 -17.45 -0.13 4.56 16 17 Cl -0.04 -0.61 29.09 -51.86 -1.51 -2.12 16 18 N -0.55 -9.84 10.36 -9.49 -0.10 -9.94 16 19 C 0.30 5.01 8.45 -155.60 -1.32 3.69 16 20 N -0.59 -7.09 6.22 -13.27 -0.08 -7.17 16 21 H 0.42 3.48 8.96 -40.82 -0.37 3.11 16 22 C 0.23 2.70 12.98 -89.63 -1.16 1.54 16 23 N -0.46 -7.63 11.28 -11.88 -0.13 -7.77 16 24 C -0.08 -1.50 7.13 -84.51 -0.60 -2.10 16 25 H 0.04 0.85 5.39 -51.93 -0.28 0.57 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.98 6.37 -51.93 -0.33 0.65 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.40 8.22 8.58 -40.82 -0.35 7.87 16 32 H 0.16 3.11 4.14 -52.49 -0.22 2.89 16 33 H 0.22 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 288.40 15.07 4.35 4.35 Total: -1.00 -28.58 288.40 -9.46 -38.05 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -3.00 Total: 9.95 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -4.31 Total: -3.54 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.04 Total: -61.75 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.51 Total: -2.12 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.58 -9.46 -38.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.508 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds