Wall clock time and date at job start Tue Mar 31 2020 01:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45192 * 109.47406 * 2 1 4 4 C 1.34739 * 117.00476 * 180.02562 * 3 2 1 5 5 O 1.21488 * 119.99497 * 359.97438 * 4 3 2 6 6 C 1.47580 * 120.00527 * 180.02562 * 4 3 2 7 7 C 1.39794 * 120.05722 * 359.97438 * 6 4 3 8 8 C 1.37642 * 119.94109 * 179.97438 * 7 6 4 9 9 C 1.39301 * 120.05774 * 0.02562 * 8 7 6 10 10 N 1.39010 * 119.93933 * 179.97438 * 9 8 7 11 11 C 1.32754 * 119.99761 * 7.07494 * 10 9 8 12 12 H 1.08001 * 120.00202 * 354.89479 * 11 10 9 13 13 C 1.46803 * 119.99689 * 174.61890 * 11 10 9 14 14 N 1.29315 * 120.00313 * 180.28122 * 13 11 10 15 15 Si 1.86801 * 119.99929 * 0.27403 * 13 11 10 16 16 H 1.48504 * 109.47205 * 90.00561 * 15 13 11 17 17 H 1.48504 * 109.47332 * 210.00313 * 15 13 11 18 18 H 1.48495 * 109.47269 * 330.00173 * 15 13 11 19 19 C 1.39251 * 120.11944 * 0.24720 * 9 8 7 20 20 N 1.48014 * 119.96877 * 179.70745 * 19 9 8 21 21 O 1.31703 * 119.99756 * 186.57329 * 20 19 9 22 22 O 1.31701 * 120.00246 * 6.57010 * 20 19 9 23 23 C 1.37691 * 120.05756 * 359.45372 * 19 9 8 24 24 H 1.09001 * 109.47144 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46880 * 300.00320 * 1 2 3 26 26 H 1.09002 * 109.46884 * 60.00113 * 1 2 3 27 27 H 1.09009 * 109.47238 * 240.00076 * 2 1 3 28 28 H 1.08998 * 109.47040 * 120.00617 * 2 1 3 29 29 H 1.08009 * 120.03281 * 359.95099 * 7 6 4 30 30 H 1.07997 * 119.97252 * 179.97438 * 8 7 6 31 31 H 0.96998 * 119.99683 * 187.07978 * 10 9 8 32 32 H 0.97001 * 120.00369 * 180.02562 * 14 13 11 33 33 H 1.08004 * 120.02831 * 180.27427 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5454 -0.0005 5 8 4.0898 0.5820 -0.0005 6 6 3.9140 2.9092 0.0000 7 6 3.0636 4.0187 0.0005 8 6 3.5923 5.2895 0.0016 9 6 4.9735 5.4705 0.0015 10 7 5.5048 6.7551 0.0020 11 6 4.7042 7.8045 0.1442 12 1 3.6336 7.6664 0.1765 13 6 5.2745 9.1519 0.2633 14 7 4.4950 10.1736 0.4072 15 14 7.1264 9.3906 0.2074 16 1 7.5559 9.6030 -1.1983 17 1 7.4977 10.5750 1.0227 18 1 7.7978 8.1838 0.7532 19 6 5.8229 4.3671 -0.0047 20 7 7.2899 4.5633 -0.0113 21 8 8.0922 3.5278 -0.1477 22 8 7.7931 5.7734 0.1193 23 6 5.2992 3.0937 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.9926 3.8789 -0.0003 30 1 2.9358 6.1470 0.0015 31 1 6.4605 6.8846 -0.1015 32 1 4.8718 11.0640 0.4856 33 1 5.9584 2.2381 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:20 Heat of formation + Delta-G solvation = -40.798802 kcal Electronic energy + Delta-G solvation = -21232.095790 eV Core-core repulsion = 17648.304701 eV Total energy + Delta-G solvation = -3583.791089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.11214 -39.25425 -36.79411 -36.52498 -35.82262 -33.93119 -32.69956 -31.72663 -30.63496 -29.62409 -25.82449 -25.26228 -23.47781 -22.31862 -21.83902 -20.36312 -19.22347 -17.98213 -17.42972 -16.61574 -16.42754 -16.23867 -15.86873 -15.45185 -14.72544 -14.54174 -13.91133 -13.86614 -13.66012 -13.29601 -13.14272 -13.07782 -12.75316 -12.11234 -12.00862 -11.79860 -11.71123 -11.55549 -10.96744 -10.87900 -10.78973 -10.34292 -10.02893 -10.00975 -9.70661 -9.48657 -9.44388 -8.67611 -8.08095 -7.86928 -4.57568 0.49024 1.42692 2.35431 2.49327 2.50916 2.66756 2.67937 3.02646 3.11744 3.25344 3.68200 3.98850 4.39186 4.94830 4.97822 5.16254 5.29378 5.31037 5.62759 5.66926 5.75933 5.77667 5.91340 5.93876 5.94385 6.35906 6.39189 6.60321 6.69333 6.83758 6.84983 7.00474 7.18204 7.58217 7.98295 8.12112 8.26319 8.46224 8.84513 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.022917 B = 0.004736 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.485577 B = 5911.175918 C = 7107.946363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.357 6.357 4 C 0.519 3.481 5 O -0.532 6.532 6 C -0.221 4.221 7 C -0.064 4.064 8 C -0.133 4.133 9 C 0.068 3.932 10 N -0.398 5.398 11 C -0.228 4.228 12 H 0.150 0.850 13 C 0.058 3.942 14 N -0.716 5.716 15 Si 0.873 3.127 16 H -0.244 1.244 17 H -0.251 1.251 18 H -0.215 1.215 19 C -0.081 4.081 20 N 0.040 4.960 21 O -0.346 6.346 22 O -0.380 6.380 23 C 0.071 3.929 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.413 0.587 32 H 0.317 0.683 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 -2.574 -0.238 9.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.368 3.632 5 O -0.423 6.423 6 C -0.227 4.227 7 C -0.086 4.086 8 C -0.153 4.153 9 C -0.064 4.064 10 N -0.005 5.005 11 C -0.373 4.373 12 H 0.167 0.833 13 C -0.174 4.174 14 N -0.338 5.338 15 Si 0.691 3.309 16 H -0.168 1.168 17 H -0.174 1.174 18 H -0.137 1.137 19 C -0.192 4.192 20 N 0.428 4.572 21 O -0.483 6.483 22 O -0.502 6.502 23 C 0.051 3.949 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.267 0.733 32 H 0.131 0.869 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.066 -2.468 -0.194 9.398 hybrid contribution 1.346 0.319 -0.066 1.385 sum -7.720 -2.148 -0.260 8.018 Atomic orbital electron populations 1.21789 0.93002 1.02555 1.03471 1.22908 0.94952 0.80989 1.02315 1.86542 1.24577 1.31293 1.85007 1.21046 0.79886 0.89884 0.72368 1.90784 1.60291 1.42822 1.48427 1.18019 0.91913 0.89625 1.23165 1.20699 0.98842 0.90647 0.98461 1.20316 0.91245 0.97425 1.06347 1.16739 0.92298 0.81417 1.15938 1.42338 1.13812 1.04476 1.39839 1.21907 0.95620 0.84387 1.35415 0.83266 1.27384 1.02888 0.93993 0.93126 1.68555 1.40662 1.01619 1.22976 0.86532 0.78781 0.83138 0.82406 1.16764 1.17435 1.13666 1.18788 0.76389 0.94159 1.29882 1.49384 1.03062 1.01350 1.03390 1.96092 1.57564 1.28901 1.65788 1.95677 1.79720 1.05959 1.68831 1.20472 0.93980 0.95020 0.85442 0.90628 0.91527 0.91539 0.91566 0.91566 0.85371 0.84834 0.73260 0.86910 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 37.16 0.38 -0.92 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.36 -5.49 9.46 -40.60 -0.38 -5.87 16 4 C 0.52 9.51 7.89 34.54 0.27 9.78 16 5 O -0.53 -10.90 16.13 -19.26 -0.31 -11.21 16 6 C -0.22 -4.19 5.88 -104.94 -0.62 -4.80 16 7 C -0.06 -1.09 9.60 -39.22 -0.38 -1.46 16 8 C -0.13 -2.40 9.26 -39.40 -0.37 -2.76 16 9 C 0.07 1.45 6.59 -83.83 -0.55 0.90 16 10 N -0.40 -8.46 4.97 -8.35 -0.04 -8.50 16 11 C -0.23 -4.47 10.30 -13.69 -0.14 -4.61 16 12 H 0.15 2.79 5.83 -52.49 -0.31 2.48 16 13 C 0.06 1.08 5.70 -15.15 -0.09 0.99 16 14 N -0.72 -13.14 13.88 56.00 0.78 -12.36 16 15 Si 0.87 15.07 27.82 -169.99 -4.73 10.34 16 16 H -0.24 -4.19 7.11 56.52 0.40 -3.79 16 17 H -0.25 -4.00 7.11 56.52 0.40 -3.59 16 18 H -0.21 -4.22 5.88 56.52 0.33 -3.89 16 19 C -0.08 -1.88 6.89 -79.77 -0.55 -2.43 16 20 N 0.04 1.04 4.98 34.05 0.17 1.21 16 21 O -0.35 -9.56 19.16 -31.57 -0.60 -10.16 16 22 O -0.38 -10.15 15.51 -31.57 -0.49 -10.64 16 23 C 0.07 1.51 9.11 -39.22 -0.36 1.16 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.13 1.83 7.60 -52.48 -0.40 1.43 16 30 H 0.13 2.12 5.97 -52.49 -0.31 1.81 16 31 H 0.41 9.23 2.41 -41.61 -0.10 9.13 16 32 H 0.32 5.06 8.26 -40.82 -0.34 4.73 16 33 H 0.14 3.11 7.17 -52.48 -0.38 2.74 16 LS Contribution 297.67 15.07 4.49 4.49 Total: -1.00 -27.67 297.67 -6.10 -33.77 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -2.81 Total: 12.11 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.16 Total: -3.17 kcal Atomic # 7 Polarization: -20.55 SS G_CDS: 0.91 Total: -19.65 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.79 Total: -37.88 kcal Atomic # 14 Polarization: 15.07 SS G_CDS: -4.73 Total: 10.34 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.67 -6.10 -33.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.031 kcal (2) G-P(sol) polarization free energy of solvation -27.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds