Wall clock time and date at job start Tue Mar 31 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46947 * 2 1 4 4 C 1.46899 * 111.00010 * 291.48265 * 3 2 1 5 5 C 1.50694 * 109.47366 * 288.60558 * 4 3 2 6 6 H 1.08003 * 120.00172 * 2.36287 * 5 4 3 7 7 C 1.37875 * 120.00303 * 182.35509 * 5 4 3 8 8 N 1.31513 * 120.00207 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00217 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46834 * 90.00059 * 9 7 5 11 11 H 1.48499 * 109.47197 * 209.99972 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00121 * 9 7 5 13 13 C 1.37997 * 111.00400 * 55.43752 * 3 2 1 14 14 N 1.32912 * 120.62968 * 256.30403 * 13 3 2 15 15 C 1.31853 * 120.83371 * 179.97438 * 14 13 3 16 16 Cl 1.73595 * 118.89972 * 180.02562 * 15 14 13 17 17 N 1.32076 * 122.19491 * 359.72002 * 15 14 13 18 18 C 1.32208 * 121.18075 * 0.57387 * 17 15 14 19 19 C 1.50702 * 120.49902 * 179.71120 * 18 17 15 20 20 C 1.39777 * 119.00814 * 359.44215 * 18 17 15 21 21 C 1.43202 * 120.98260 * 180.25532 * 20 18 17 22 22 N 3.69591 * 129.73860 * 85.10480 * 2 1 3 23 23 H 1.08998 * 109.46680 * 60.04914 * 1 2 3 24 24 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47293 * 300.05044 * 1 2 3 26 26 H 1.08996 * 109.47413 * 239.99844 * 2 1 3 27 27 H 1.09002 * 109.46968 * 119.99702 * 2 1 3 28 28 H 1.09000 * 109.46933 * 48.60522 * 4 3 2 29 29 H 1.08998 * 109.47395 * 168.60491 * 4 3 2 30 30 H 0.96995 * 120.00694 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.46990 * 269.72809 * 19 18 17 32 32 H 1.09003 * 109.46648 * 29.72363 * 19 18 17 33 33 H 1.09001 * 109.47125 * 149.72077 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7216 2.0487 -1.2761 5 6 2.6038 1.4790 -2.3568 6 1 3.2879 0.6752 -2.1277 7 6 2.5377 1.9836 -3.6382 8 7 1.7050 2.9625 -3.9173 9 14 3.6308 1.2768 -4.9780 10 1 2.9275 0.1546 -5.6499 11 1 3.9401 2.3342 -5.9737 12 1 4.8938 0.7796 -4.3755 13 6 1.4955 2.0949 1.0609 14 7 0.5117 2.9683 0.8712 15 6 0.0075 3.6484 1.8820 16 17 -1.2769 4.7757 1.5772 17 7 0.4431 3.4963 3.1196 18 6 1.4224 2.6542 3.4019 19 6 1.9118 2.4974 4.8186 20 6 1.9933 1.9072 2.3675 21 6 3.0525 0.9789 2.6264 22 7 3.8928 0.2425 2.8317 23 1 -0.3632 0.5131 -0.8904 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5146 0.8895 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.6760 1.8836 -1.5360 29 1 1.9079 3.1185 -1.1815 30 1 1.6587 3.3178 -4.8187 31 1 2.7207 3.2041 5.0038 32 1 1.0923 2.6940 5.5099 33 1 2.2763 1.4809 4.9667 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:55 Heat of formation + Delta-G solvation = 82.313910 kcal Electronic energy + Delta-G solvation = -19508.362021 eV Core-core repulsion = 16402.911416 eV Total energy + Delta-G solvation = -3105.450605 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.36984 -37.96116 -36.93734 -36.42015 -34.05201 -32.87114 -31.99527 -29.80849 -29.07696 -26.86913 -24.98279 -23.17125 -22.99345 -20.37139 -19.10353 -18.07988 -17.02694 -16.16796 -16.02299 -15.27612 -14.82977 -14.21554 -13.74366 -13.64628 -13.52753 -13.45974 -13.15310 -12.89163 -12.62035 -12.49405 -12.11850 -11.72594 -11.50004 -11.45347 -11.37646 -11.24713 -10.92741 -10.80988 -10.62669 -10.42782 -10.11959 -9.57557 -9.32438 -9.22914 -8.57720 -7.98161 -6.13914 -4.18197 0.32200 0.99160 1.41379 2.73884 2.97923 3.25505 3.32563 3.36049 3.66675 3.76798 3.91598 3.94890 4.36366 4.51456 4.85359 5.06685 5.21761 5.29030 5.31609 5.44536 5.50515 5.56662 5.71122 5.91053 6.05548 6.28625 6.49400 6.58074 6.94876 7.15126 7.49220 7.60416 7.61183 7.86909 7.93614 8.21781 8.86857 9.46019 10.95998 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.006213 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.282714 B = 4505.753325 C = 5595.411235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.067 3.933 3 N -0.473 5.473 4 C 0.196 3.804 5 C -0.523 4.523 6 H 0.064 0.936 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.439 3.561 14 N -0.529 5.529 15 C 0.409 3.591 16 Cl 0.027 6.973 17 N -0.535 5.535 18 C 0.249 3.751 19 C -0.110 4.110 20 C -0.160 4.160 21 C 0.282 3.718 22 N -0.411 5.411 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.042 0.958 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.677 -0.435 14.021 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.058 4.058 3 N -0.190 5.190 4 C 0.073 3.927 5 C -0.561 4.561 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.197 3.803 14 N -0.251 5.251 15 C 0.114 3.886 16 Cl 0.055 6.945 17 N -0.255 5.255 18 C 0.101 3.899 19 C -0.167 4.167 20 C -0.172 4.172 21 C -0.034 4.034 22 N -0.086 5.086 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.125 0.875 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.750 -0.789 13.919 14.437 hybrid contribution 0.017 -0.170 -1.113 1.126 sum -3.732 -0.959 12.806 13.373 Atomic orbital electron populations 1.22424 0.96822 1.02168 1.02730 1.22168 0.93564 0.86327 1.03694 1.59533 1.50452 1.03632 1.05360 1.19958 0.97182 0.94777 0.80756 1.21063 1.22425 1.19716 0.92926 0.91764 1.24931 0.95634 0.94915 0.98563 1.69961 1.36320 1.25537 1.20818 0.86480 0.80845 0.78686 0.81344 1.20545 1.21105 1.19752 1.20406 0.82663 0.87397 0.89817 1.68403 1.11039 1.11103 1.34593 1.23053 0.90435 0.89911 0.85221 1.98440 1.44563 1.56160 1.95368 1.67772 1.15053 1.21559 1.21127 1.21570 0.86795 0.85698 0.95861 1.20892 1.02814 1.03656 0.89326 1.17202 1.00686 1.04136 0.95137 1.24561 0.92580 0.92842 0.93457 1.81203 1.09705 1.09773 1.07969 0.90382 0.91883 0.93892 0.87502 0.91917 0.95642 0.93937 0.92634 0.88652 0.88788 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 9.32 37.16 0.35 -2.61 16 2 C 0.07 1.19 5.75 -3.82 -0.02 1.17 16 3 N -0.47 -9.71 4.22 -174.10 -0.74 -10.44 16 4 C 0.20 4.82 3.84 -4.98 -0.02 4.80 16 5 C -0.52 -13.91 8.50 -34.44 -0.29 -14.21 16 6 H 0.06 1.69 7.45 -52.48 -0.39 1.30 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 9 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.44 8.10 4.38 -154.81 -0.68 7.43 16 14 N -0.53 -9.89 8.75 -10.62 -0.09 -9.99 16 15 C 0.41 6.66 8.17 -91.86 -0.75 5.91 16 16 Cl 0.03 0.38 29.26 -51.86 -1.52 -1.14 16 17 N -0.53 -7.77 10.32 -7.61 -0.08 -7.85 16 18 C 0.25 3.29 6.86 -81.85 -0.56 2.73 16 19 C -0.11 -0.97 9.84 36.01 0.35 -0.62 16 20 C -0.16 -2.49 5.73 -106.32 -0.61 -3.10 16 21 C 0.28 4.43 12.18 -22.47 -0.27 4.16 16 22 N -0.41 -6.87 18.54 41.84 0.78 -6.09 16 23 H 0.08 1.44 6.44 -51.93 -0.33 1.10 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.68 6.94 -51.93 -0.36 0.32 16 26 H 0.11 1.99 7.03 -51.93 -0.37 1.62 16 27 H 0.06 1.01 6.87 -51.93 -0.36 0.65 16 28 H 0.03 0.66 6.17 -51.93 -0.32 0.34 16 29 H 0.04 1.16 7.74 -51.93 -0.40 0.76 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.69 7.18 -51.93 -0.37 0.32 16 LS Contribution 303.82 15.07 4.58 4.58 Total: -1.00 -29.03 303.82 -7.26 -36.30 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -3.31 Total: -3.89 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.60 Total: 7.27 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.61 Total: -59.03 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.52 Total: -1.14 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.03 -7.26 -36.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.611 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds