Wall clock time and date at job start Tue Mar 31 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46947 * 2 1 4 4 C 1.46899 * 111.00010 * 291.48265 * 3 2 1 5 5 C 1.50694 * 109.47366 * 288.60558 * 4 3 2 6 6 H 1.08003 * 120.00172 * 2.36287 * 5 4 3 7 7 C 1.37875 * 120.00303 * 182.35509 * 5 4 3 8 8 N 1.31513 * 120.00207 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00217 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46834 * 90.00059 * 9 7 5 11 11 H 1.48499 * 109.47197 * 209.99972 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00121 * 9 7 5 13 13 C 1.37997 * 111.00400 * 55.43752 * 3 2 1 14 14 N 1.32912 * 120.62968 * 256.30403 * 13 3 2 15 15 C 1.31853 * 120.83371 * 179.97438 * 14 13 3 16 16 Cl 1.73595 * 118.89972 * 180.02562 * 15 14 13 17 17 N 1.32076 * 122.19491 * 359.72002 * 15 14 13 18 18 C 1.32208 * 121.18075 * 0.57387 * 17 15 14 19 19 C 1.50702 * 120.49902 * 179.71120 * 18 17 15 20 20 C 1.39777 * 119.00814 * 359.44215 * 18 17 15 21 21 C 1.43202 * 120.98260 * 180.25532 * 20 18 17 22 22 N 3.69591 * 129.73860 * 85.10480 * 2 1 3 23 23 H 1.08998 * 109.46680 * 60.04914 * 1 2 3 24 24 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47293 * 300.05044 * 1 2 3 26 26 H 1.08996 * 109.47413 * 239.99844 * 2 1 3 27 27 H 1.09002 * 109.46968 * 119.99702 * 2 1 3 28 28 H 1.09000 * 109.46933 * 48.60522 * 4 3 2 29 29 H 1.08998 * 109.47395 * 168.60491 * 4 3 2 30 30 H 0.96995 * 120.00694 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.46990 * 269.72809 * 19 18 17 32 32 H 1.09003 * 109.46648 * 29.72363 * 19 18 17 33 33 H 1.09001 * 109.47125 * 149.72077 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7216 2.0487 -1.2761 5 6 2.6038 1.4790 -2.3568 6 1 3.2879 0.6752 -2.1277 7 6 2.5377 1.9836 -3.6382 8 7 1.7050 2.9625 -3.9173 9 14 3.6308 1.2768 -4.9780 10 1 2.9275 0.1546 -5.6499 11 1 3.9401 2.3342 -5.9737 12 1 4.8938 0.7796 -4.3755 13 6 1.4955 2.0949 1.0609 14 7 0.5117 2.9683 0.8712 15 6 0.0075 3.6484 1.8820 16 17 -1.2769 4.7757 1.5772 17 7 0.4431 3.4963 3.1196 18 6 1.4224 2.6542 3.4019 19 6 1.9118 2.4974 4.8186 20 6 1.9933 1.9072 2.3675 21 6 3.0525 0.9789 2.6264 22 7 3.8928 0.2425 2.8317 23 1 -0.3632 0.5131 -0.8904 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5146 0.8895 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.6760 1.8836 -1.5360 29 1 1.9079 3.1185 -1.1815 30 1 1.6587 3.3178 -4.8187 31 1 2.7207 3.2041 5.0038 32 1 1.0923 2.6940 5.5099 33 1 2.2763 1.4809 4.9667 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:54 Heat of formation + Delta-G solvation = 64.695776 kcal Electronic energy + Delta-G solvation = -19509.126001 eV Core-core repulsion = 16402.911416 eV Total energy + Delta-G solvation = -3106.214585 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.67393 -39.41407 -38.17041 -37.68673 -35.35809 -34.79955 -33.31098 -31.35846 -30.17725 -28.62276 -26.27867 -24.95125 -24.31416 -21.82570 -20.37868 -19.43011 -18.57650 -17.96799 -17.42106 -16.78479 -16.40283 -15.84483 -15.18257 -14.79457 -14.75889 -14.68387 -14.41555 -14.07952 -13.99509 -13.81271 -13.32863 -13.30251 -12.98472 -12.85412 -12.70196 -12.63743 -12.54379 -12.51513 -12.11486 -12.05953 -11.67750 -11.45944 -10.69683 -10.61304 -10.55114 -9.58468 -8.22344 -6.33687 -0.94120 -0.25246 0.18887 1.41401 1.42670 1.46684 1.53518 1.70879 2.27277 2.43173 2.51025 2.68026 2.79058 3.11208 3.27292 3.55765 3.85563 4.02037 4.11947 4.34778 4.48270 4.62338 4.67046 4.72895 4.81274 4.96353 5.12663 5.15769 5.30596 5.46574 5.58766 5.85657 5.91321 6.28667 6.35337 6.59602 6.80139 7.35081 8.88218 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.006213 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.282714 B = 4505.753325 C = 5595.411235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.066 3.934 3 N -0.485 5.485 4 C 0.222 3.778 5 C -0.534 4.534 6 H 0.064 0.936 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.422 3.578 14 N -0.562 5.562 15 C 0.403 3.597 16 Cl 0.040 6.960 17 N -0.526 5.526 18 C 0.264 3.736 19 C -0.108 4.108 20 C -0.159 4.159 21 C 0.295 3.705 22 N -0.425 5.425 23 H 0.048 0.952 24 H 0.092 0.908 25 H 0.044 0.956 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.266 0.734 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 -1.163 15.715 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.058 4.058 3 N -0.202 5.202 4 C 0.098 3.902 5 C -0.572 4.572 6 H 0.082 0.918 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.791 3.209 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.181 3.819 14 N -0.285 5.285 15 C 0.108 3.892 16 Cl 0.068 6.932 17 N -0.246 5.246 18 C 0.116 3.884 19 C -0.164 4.164 20 C -0.171 4.171 21 C -0.021 4.021 22 N -0.101 5.101 23 H 0.067 0.933 24 H 0.111 0.889 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.315 -1.526 15.648 16.068 hybrid contribution -0.180 0.106 -1.515 1.530 sum -3.495 -1.421 14.132 14.627 Atomic orbital electron populations 1.22288 0.95716 1.03603 1.01302 1.22232 0.94523 0.85139 1.03924 1.59484 1.51906 1.04625 1.04204 1.19366 0.95477 0.92816 0.82578 1.21384 1.22445 1.19593 0.93802 0.91754 1.25792 0.96907 0.95171 1.00933 1.70087 1.37973 1.26931 1.21401 0.85434 0.79054 0.78089 0.78353 1.19488 1.20911 1.19252 1.20402 0.83456 0.87770 0.90298 1.68292 1.12093 1.12029 1.36077 1.23280 0.90642 0.89876 0.85391 1.98440 1.43805 1.55503 1.95426 1.67964 1.15196 1.21563 1.19859 1.22317 0.85194 0.83622 0.97264 1.21113 1.04121 1.04830 0.86366 1.17197 1.00794 1.04669 0.94413 1.24443 0.92224 0.92464 0.92964 1.81224 1.10077 1.10216 1.08555 0.93278 0.88926 0.93703 0.88796 0.89952 0.97742 0.97600 0.92541 0.86603 0.86542 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.49 9.32 71.98 0.67 -4.82 16 2 C 0.07 2.35 5.75 86.30 0.50 2.84 16 3 N -0.49 -20.28 4.22 -704.73 -2.98 -23.26 16 4 C 0.22 11.37 3.84 85.56 0.33 11.70 16 5 C -0.53 -29.09 8.50 25.60 0.22 -28.88 16 6 H 0.06 3.43 7.45 -2.91 -0.02 3.40 16 7 C 0.01 0.63 5.46 84.65 0.46 1.10 16 8 N -0.92 -54.26 13.29 21.45 0.28 -53.98 16 9 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.42 15.63 4.38 133.73 0.59 16.21 16 14 N -0.56 -21.36 8.75 -187.52 -1.64 -23.00 16 15 C 0.40 12.91 8.17 180.78 1.48 14.38 16 16 Cl 0.04 1.13 29.26 -2.72 -0.08 1.05 16 17 N -0.53 -14.30 10.32 -178.00 -1.84 -16.14 16 18 C 0.26 6.36 6.86 42.88 0.29 6.65 16 19 C -0.11 -1.50 9.84 71.24 0.70 -0.80 16 20 C -0.16 -4.74 5.73 -20.96 -0.12 -4.86 16 21 C 0.29 8.77 12.18 88.33 1.08 9.85 16 22 N -0.42 -13.44 18.54 19.00 0.35 -13.09 16 23 H 0.05 1.86 6.44 -2.39 -0.02 1.85 16 24 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.04 1.40 6.94 -2.39 -0.02 1.39 16 26 H 0.09 3.54 7.03 -2.39 -0.02 3.52 16 27 H 0.08 2.57 6.87 -2.39 -0.02 2.55 16 28 H 0.00 0.26 6.17 -2.39 -0.01 0.24 16 29 H 0.01 0.34 7.74 -2.39 -0.02 0.32 16 30 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.19 7.18 -2.39 -0.02 1.17 16 Total: -1.00 -63.75 303.82 3.48 -60.27 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: 1.15 Total: -0.50 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 6.19 Total: 23.37 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -5.82 Total: -129.46 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 17 Polarization: 1.13 SS G_CDS: -0.08 Total: 1.05 kcal Total: -63.75 3.48 -60.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.967 kcal (2) G-P(sol) polarization free energy of solvation -63.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds