Wall clock time and date at job start Tue Mar 31 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46899 * 109.47286 * 2 1 4 4 C 1.46905 * 110.99968 * 164.67532 * 3 2 1 5 5 C 1.50693 * 109.47050 * 284.44673 * 4 3 2 6 6 H 1.08005 * 120.00339 * 355.63522 * 5 4 3 7 7 C 1.37882 * 119.99793 * 175.63417 * 5 4 3 8 8 N 1.31508 * 120.00206 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00004 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47300 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47448 * 119.99598 * 9 7 5 12 12 H 1.48508 * 109.46784 * 239.99924 * 9 7 5 13 13 C 1.41078 * 110.99841 * 288.62868 * 3 2 1 14 14 C 1.36235 * 127.19573 * 296.07215 * 13 3 2 15 15 N 1.33846 * 110.98724 * 180.02562 * 14 13 3 16 16 C 1.31322 * 111.97088 * 359.97438 * 15 14 13 17 17 N 1.37813 * 135.89998 * 180.02562 * 16 15 14 18 18 H 0.96989 * 120.34041 * 359.97438 * 17 16 15 19 19 C 1.34148 * 119.31708 * 179.20264 * 17 16 15 20 20 N 1.30855 * 123.27066 * 0.70129 * 19 17 16 21 21 C 1.33128 * 122.73564 * 359.56606 * 20 19 17 22 22 Cl 1.73598 * 120.50391 * 180.02562 * 21 20 19 23 23 C 1.38716 * 118.98970 * 359.97438 * 21 20 19 24 24 H 1.09000 * 109.47137 * 305.36283 * 1 2 3 25 25 H 1.09000 * 109.47484 * 65.36278 * 1 2 3 26 26 H 1.09001 * 109.47733 * 185.36660 * 1 2 3 27 27 H 1.09005 * 109.47175 * 120.00451 * 2 1 3 28 28 H 1.08997 * 109.47165 * 239.99812 * 2 1 3 29 29 H 1.09002 * 109.47092 * 44.45074 * 4 3 2 30 30 H 1.09005 * 109.46961 * 164.44637 * 4 3 2 31 31 H 0.97003 * 120.00718 * 180.02562 * 8 7 5 32 32 H 1.08000 * 124.51087 * 359.97438 * 14 13 3 33 33 H 1.08006 * 118.35975 * 180.24413 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4422 1.4404 0.3625 5 6 3.5909 1.2277 1.8469 6 1 2.7135 1.1378 2.4702 7 6 4.8473 1.1478 2.4094 8 7 5.9157 1.2567 1.6504 9 14 5.0317 0.8835 4.2493 10 1 3.6874 0.7933 4.8738 11 1 5.7781 -0.3764 4.4961 12 1 5.7764 2.0241 4.8410 13 6 1.7915 2.0018 -1.2481 14 6 2.3293 1.6524 -2.4500 15 7 1.8909 2.4590 -3.4240 16 6 1.0616 3.3709 -2.9708 17 7 0.3419 4.4124 -3.5154 18 1 0.3948 4.6005 -4.4654 19 6 -0.4446 5.1536 -2.7207 20 7 -0.5603 4.9498 -1.4333 21 6 0.0900 3.9779 -0.7970 22 17 -0.1070 3.7592 0.9138 23 6 0.9264 3.1419 -1.5221 24 1 -0.3633 0.5948 0.8381 25 1 -0.3634 0.4284 -0.9341 26 1 -0.3634 -1.0231 0.0961 27 1 1.8933 -0.5139 0.8900 28 1 1.8932 -0.5138 -0.8899 29 1 3.9840 0.6604 -0.1725 30 1 3.8482 2.4153 0.0926 31 1 6.7996 1.2002 2.0459 32 1 3.0184 0.8340 -2.5973 33 1 -1.0048 5.9634 -3.1644 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592591.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:57 Heat of formation + Delta-G solvation = 73.462467 kcal Electronic energy + Delta-G solvation = -19586.673686 eV Core-core repulsion = 16480.839253 eV Total energy + Delta-G solvation = -3105.834433 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.66125 -40.01331 -38.04366 -37.64353 -35.60605 -34.70401 -31.72075 -31.23605 -29.81962 -27.56184 -25.81955 -24.27441 -24.09652 -23.24681 -21.03875 -19.39336 -18.91967 -18.31279 -17.70591 -16.94780 -16.83503 -16.55061 -15.71795 -15.63923 -15.00451 -14.36086 -14.27449 -14.18935 -14.08854 -13.77229 -13.49387 -12.90262 -12.72736 -12.57717 -12.36737 -12.30975 -12.02890 -11.83767 -11.64251 -11.57759 -11.29981 -10.83665 -10.59292 -9.60419 -9.00716 -8.81739 -8.16309 -6.27364 -1.07008 0.41866 0.63306 1.28193 1.41488 1.41995 1.56160 2.05468 2.37296 2.41829 2.94538 3.06288 3.14779 3.45259 3.70466 4.01312 4.21015 4.25534 4.35305 4.52415 4.71001 4.85948 4.98026 5.10694 5.19194 5.25051 5.37174 5.45121 5.56654 5.72892 5.85485 6.13964 6.34434 6.45766 6.82164 6.88791 6.93059 7.42053 8.93914 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.005872 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.889304 B = 4766.877304 C = 5137.284518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.065 3.935 3 N -0.473 5.473 4 C 0.225 3.775 5 C -0.512 4.512 6 H 0.064 0.936 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.025 3.975 14 C -0.009 4.009 15 N -0.524 5.524 16 C 0.264 3.736 17 N -0.516 5.516 18 H 0.452 0.548 19 C 0.416 3.584 20 N -0.563 5.563 21 C 0.303 3.697 22 Cl 0.003 6.997 23 C -0.229 4.229 24 H 0.055 0.945 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.019 0.981 29 H -0.032 1.032 30 H -0.014 1.014 31 H 0.263 0.737 32 H 0.146 0.854 33 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.062 8.898 -10.686 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.062 4.062 3 N -0.195 5.195 4 C 0.100 3.900 5 C -0.550 4.550 6 H 0.083 0.917 7 C -0.196 4.196 8 N -0.578 5.578 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.206 1.206 13 C -0.075 4.075 14 C -0.150 4.150 15 N -0.244 5.244 16 C 0.009 3.991 17 N -0.126 5.126 18 H 0.296 0.704 19 C 0.134 3.866 20 N -0.286 5.286 21 C 0.145 3.855 22 Cl 0.032 6.968 23 C -0.242 4.242 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.037 0.963 29 H -0.014 1.014 30 H 0.004 0.996 31 H 0.072 0.928 32 H 0.163 0.837 33 H 0.315 0.685 Dipole moment (debyes) X Y Z Total from point charges -17.252 9.352 -10.585 22.297 hybrid contribution 1.709 -1.219 0.505 2.159 sum -15.543 8.133 -10.080 20.232 Atomic orbital electron populations 1.21581 0.93683 1.01825 1.01019 1.22016 0.96558 0.87842 0.99763 1.59641 1.19356 1.16779 1.23710 1.19293 0.82075 0.93161 0.95436 1.21435 0.92343 1.48237 0.93032 0.91735 1.25911 0.95353 0.95109 1.03263 1.70114 0.98411 1.51831 1.37421 0.85342 0.78470 0.77698 0.79160 1.18582 1.20296 1.20584 1.20110 1.00027 0.97095 0.90305 1.22666 1.02281 1.00341 0.89691 1.68997 1.14954 1.06802 1.33692 1.20099 0.97538 0.93325 0.88116 1.42102 1.33294 1.22008 1.15177 0.70440 1.26325 0.84713 0.91085 0.84462 1.67534 1.29180 1.22154 1.09776 1.21876 0.87487 0.88082 0.88065 1.98472 1.95324 1.95146 1.07828 1.21358 1.06102 1.02422 0.94345 0.92561 0.94260 0.90632 0.91403 0.96291 1.01421 0.99559 0.92789 0.83676 0.68546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 9.89 71.98 0.71 -3.48 16 2 C 0.06 2.73 5.48 86.30 0.47 3.21 16 3 N -0.47 -22.34 4.52 -693.50 -3.14 -25.48 16 4 C 0.23 12.85 4.52 85.55 0.39 13.23 16 5 C -0.51 -30.12 8.51 25.60 0.22 -29.90 16 6 H 0.06 3.73 7.81 -2.91 -0.02 3.71 16 7 C 0.00 0.07 5.46 84.66 0.46 0.53 16 8 N -0.94 -58.45 13.29 21.45 0.28 -58.16 16 9 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 C 0.03 1.11 4.38 39.12 0.17 1.28 16 14 C -0.01 -0.38 10.95 83.92 0.92 0.54 16 15 N -0.52 -19.43 11.08 -187.95 -2.08 -21.51 16 16 C 0.26 7.94 8.73 135.95 1.19 9.13 16 17 N -0.52 -7.10 5.37 -191.72 -1.03 -8.13 16 18 H 0.45 2.02 8.93 -92.72 -0.83 1.19 16 19 C 0.42 3.93 12.25 180.44 2.21 6.14 16 20 N -0.56 -11.97 10.30 -189.42 -1.95 -13.92 16 21 C 0.30 9.51 7.38 84.61 0.62 10.14 16 22 Cl 0.00 0.10 29.16 -2.72 -0.08 0.02 16 23 C -0.23 -8.33 6.47 -18.85 -0.12 -8.46 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.04 1.33 7.72 -2.39 -0.02 1.31 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.07 3.04 7.35 -2.38 -0.02 3.02 16 28 H 0.02 0.79 7.65 -2.39 -0.02 0.77 16 29 H -0.03 -1.97 8.00 -2.39 -0.02 -1.99 16 30 H -0.01 -0.87 7.92 -2.38 -0.02 -0.89 16 31 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.15 6.28 8.06 -2.91 -0.02 6.26 16 33 H 0.30 -2.08 8.06 -2.91 -0.02 -2.11 16 Total: -1.00 -84.10 304.70 1.60 -82.50 By element: Atomic # 1 Polarization: -5.68 SS G_CDS: 0.32 Total: -5.36 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 7.24 Total: 2.35 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -7.91 Total: -127.20 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.08 Total: 0.02 kcal Total: -84.10 1.60 -82.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592591.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.963 kcal (2) G-P(sol) polarization free energy of solvation -84.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds