Wall clock time and date at job start Tue Mar 31 2020 01:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50690 * 109.46860 * 2 1 4 4 C 1.34385 * 125.09287 * 275.02102 * 3 2 1 5 5 C 1.46085 * 106.82256 * 180.02562 * 4 3 2 6 6 C 1.40833 * 106.20485 * 359.97438 * 5 4 3 7 7 N 1.33131 * 118.55676 * 180.02562 * 6 5 4 8 8 C 1.31739 * 120.72476 * 0.02562 * 7 6 5 9 9 Cl 1.73598 * 118.64434 * 179.97438 * 8 7 6 10 10 N 1.32097 * 122.70926 * 359.97177 * 8 7 6 11 11 C 1.33090 * 121.02237 * 0.02562 * 10 8 7 12 12 N 1.38191 * 120.84144 * 179.97438 * 11 10 8 13 13 C 1.46504 * 119.99917 * 178.35457 * 12 11 10 14 14 C 1.36908 * 120.00404 * 358.35769 * 12 11 10 15 15 H 1.08000 * 119.99413 * 30.39380 * 14 12 11 16 16 C 1.38822 * 120.00395 * 210.40101 * 14 12 11 17 17 N 1.31541 * 119.99633 * 213.06445 * 16 14 12 18 18 Si 1.86793 * 120.00035 * 33.05401 * 16 14 12 19 19 H 1.48504 * 109.46949 * 95.08369 * 18 16 14 20 20 H 1.48501 * 109.47454 * 215.07886 * 18 16 14 21 21 H 1.48501 * 109.47362 * 335.08383 * 18 16 14 22 22 N 1.36809 * 107.13923 * 0.02562 * 6 5 4 23 23 H 0.96998 * 124.99071 * 179.73472 * 22 6 5 24 24 H 1.09002 * 109.46894 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47276 * 300.00094 * 1 2 3 26 26 H 1.09001 * 109.46749 * 60.00008 * 1 2 3 27 27 H 1.09002 * 109.46776 * 239.99691 * 2 1 3 28 28 H 1.09001 * 109.46749 * 119.99992 * 2 1 3 29 29 H 1.08000 * 126.58889 * 0.02562 * 4 3 2 30 30 H 1.09001 * 109.46837 * 58.12870 * 13 12 11 31 31 H 1.09003 * 109.47180 * 178.12976 * 13 12 11 32 32 H 1.08998 * 109.47167 * 298.13019 * 13 12 11 33 33 H 0.97005 * 119.99814 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.1990 2.1812 -1.0953 5 6 2.6998 3.4756 -0.6392 6 6 2.7987 3.3867 0.7629 7 7 3.2365 4.4471 1.4384 8 6 3.5694 5.5556 0.8092 9 17 4.1329 6.9058 1.7435 10 7 3.4920 5.6821 -0.5035 11 6 3.0660 4.6774 -1.2654 12 7 2.9861 4.8140 -2.6382 13 6 2.5489 3.6845 -3.4625 14 6 3.3155 6.0047 -3.2281 15 1 4.0602 6.6432 -2.7764 16 6 2.6921 6.3915 -4.4067 17 7 3.3534 7.0945 -5.3004 18 14 0.9144 5.9133 -4.7235 19 1 0.0211 7.0233 -4.3048 20 1 0.7246 5.6446 -6.1716 21 1 0.5842 4.6920 -3.9459 22 7 2.3877 2.1309 1.1173 23 1 2.3561 1.7916 2.0254 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0010 1.8912 -2.1166 30 1 1.5554 3.3669 -3.1460 31 1 2.5170 3.9889 -4.5086 32 1 3.2490 2.8572 -3.3460 33 1 2.9177 7.3651 -6.1238 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:46 Heat of formation + Delta-G solvation = 94.457519 kcal Electronic energy + Delta-G solvation = -19557.372658 eV Core-core repulsion = 16452.448639 eV Total energy + Delta-G solvation = -3104.924019 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12775 -38.27207 -36.83308 -35.84247 -33.46373 -32.76582 -31.38005 -30.42503 -28.11225 -26.73397 -25.17219 -23.49432 -22.06826 -21.33099 -19.95308 -17.94081 -17.83970 -16.35660 -15.86809 -15.39695 -14.93618 -14.41360 -14.17426 -14.05686 -13.73325 -13.49136 -13.11141 -13.00024 -12.93338 -12.70700 -12.11560 -11.57644 -11.43550 -11.18238 -11.04512 -10.90385 -10.74991 -10.69912 -10.25486 -9.91428 -9.77528 -9.17262 -8.37892 -8.30688 -8.14140 -6.96239 -6.78127 -3.99986 1.69727 2.15319 2.31272 2.95913 3.04863 3.09122 3.18766 3.33537 3.88216 4.05757 4.52449 4.80235 4.90934 4.97155 5.25652 5.35580 5.45111 5.51695 5.73338 5.74000 5.78573 5.88116 5.97297 6.04233 6.12038 6.14792 6.24430 6.64816 6.92361 7.13492 7.41821 7.62884 7.88134 8.14595 8.37982 8.84910 9.04853 9.32548 10.29481 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.008214 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.507147 B = 3408.101991 C = 5356.789906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C 0.025 3.975 4 C -0.151 4.151 5 C -0.276 4.276 6 C 0.355 3.645 7 N -0.614 5.614 8 C 0.438 3.562 9 Cl -0.010 7.010 10 N -0.577 5.577 11 C 0.425 3.575 12 N -0.396 5.396 13 C 0.079 3.921 14 C -0.311 4.311 15 H 0.123 0.877 16 C 0.066 3.934 17 N -0.823 5.823 18 Si 0.856 3.144 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.249 1.249 22 N -0.566 5.566 23 H 0.410 0.590 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.144 0.856 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 -12.087 6.504 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.082 4.082 4 C -0.177 4.177 5 C -0.290 4.290 6 C 0.119 3.881 7 N -0.352 5.352 8 C 0.138 3.862 9 Cl 0.017 6.983 10 N -0.311 5.311 11 C 0.177 3.823 12 N -0.083 5.083 13 C -0.064 4.064 14 C -0.439 4.439 15 H 0.140 0.860 16 C -0.145 4.145 17 N -0.454 5.454 18 Si 0.680 3.320 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.173 1.173 22 N -0.174 5.174 23 H 0.247 0.753 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.162 0.838 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.103 -11.224 6.575 13.640 hybrid contribution -1.101 -0.558 -0.148 1.244 sum -5.205 -11.782 6.427 14.395 Atomic orbital electron populations 1.21794 0.94778 1.01441 1.02580 1.20045 0.95853 0.89825 1.03050 1.19950 1.07910 0.94866 0.85431 1.21434 1.06808 0.91953 0.97506 1.19622 1.17746 0.96987 0.94683 1.17529 0.95645 0.86069 0.88842 1.66370 1.28871 0.99379 1.40559 1.21589 0.92482 0.86523 0.85567 1.98347 1.86869 1.41609 1.71437 1.67304 1.28223 1.31849 1.03754 1.17529 0.93247 0.86839 0.84716 1.42625 1.54094 1.11223 1.00390 1.22390 0.99290 0.89175 0.95583 1.19376 1.21762 0.97469 1.05333 0.85973 1.25377 0.98604 0.96000 0.94522 1.69966 1.35891 1.33549 1.05998 0.87345 0.85861 0.80658 0.78150 1.19993 1.20340 1.17329 1.41161 1.57995 1.09517 1.08737 0.75345 0.92435 0.92826 0.92066 0.89704 0.91430 0.83827 0.91779 0.90509 0.92084 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.16 0.37 -0.96 16 2 C -0.05 -0.48 6.45 -27.89 -0.18 -0.66 16 3 C 0.02 0.35 6.35 -81.61 -0.52 -0.17 16 4 C -0.15 -2.51 9.19 -37.80 -0.35 -2.86 16 5 C -0.28 -5.77 6.02 -104.96 -0.63 -6.40 16 6 C 0.36 7.14 8.48 -155.84 -1.32 5.81 16 7 N -0.61 -13.21 10.42 -10.94 -0.11 -13.33 16 8 C 0.44 9.84 8.15 -91.94 -0.75 9.09 16 9 Cl -0.01 -0.19 29.25 -51.86 -1.52 -1.71 16 10 N -0.58 -14.24 9.43 -10.74 -0.10 -14.34 16 11 C 0.42 10.10 7.37 -154.74 -1.14 8.96 16 12 N -0.40 -9.36 2.76 -122.10 -0.34 -9.70 16 13 C 0.08 1.52 6.60 59.85 0.39 1.91 16 14 C -0.31 -8.20 9.44 -15.07 -0.14 -8.34 16 15 H 0.12 3.59 7.74 -52.49 -0.41 3.19 16 16 C 0.07 1.69 4.89 -17.46 -0.09 1.60 16 17 N -0.82 -21.80 13.96 55.49 0.77 -21.03 16 18 Si 0.86 18.63 26.34 -169.99 -4.48 14.16 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.25 -5.08 4.91 56.52 0.28 -4.80 16 22 N -0.57 -8.74 6.03 -8.40 -0.05 -8.79 16 23 H 0.41 5.07 8.96 -40.82 -0.37 4.70 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.14 2.10 5.63 -52.49 -0.30 1.80 16 30 H 0.06 1.14 5.47 -51.93 -0.28 0.86 16 31 H 0.08 1.47 5.21 -51.93 -0.27 1.20 16 32 H 0.06 1.03 7.24 -51.93 -0.38 0.66 16 33 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 289.44 15.07 4.36 4.36 Total: -1.00 -29.72 289.44 -9.19 -38.91 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.37 Total: 3.47 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -4.35 Total: 8.00 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: 0.17 Total: -67.18 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.48 Total: 14.16 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.72 -9.19 -38.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.367 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds