Wall clock time and date at job start Tue Mar 31 2020 01:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47238 * 2 1 4 4 C 1.52999 * 109.47238 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47043 * 179.97438 * 4 3 2 6 6 C 1.36894 * 119.99988 * 89.99848 * 5 4 3 7 7 H 1.07999 * 119.99807 * 352.78031 * 6 5 4 8 8 C 1.38893 * 120.00055 * 172.77043 * 6 5 4 9 9 N 1.31495 * 119.99966 * 7.76751 * 8 6 5 10 10 Si 1.86802 * 119.99871 * 187.76512 * 8 6 5 11 11 H 1.48494 * 109.47225 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46774 * 120.00258 * 10 8 6 13 13 H 1.48503 * 109.46815 * 239.99922 * 10 8 6 14 14 C 1.38011 * 120.00024 * 269.99942 * 5 4 3 15 15 N 1.33026 * 120.63987 * 95.86754 * 14 5 4 16 16 C 1.31665 * 120.89366 * 180.02562 * 15 14 5 17 17 N 1.31953 * 122.26754 * 0.02562 * 16 15 14 18 18 C 1.32350 * 121.17925 * 359.97438 * 17 16 15 19 19 Cl 1.73604 * 120.51928 * 180.02562 * 18 17 16 20 20 C 1.40022 * 118.95494 * 359.72081 * 18 17 16 21 21 C 1.43209 * 121.00926 * 180.29443 * 20 18 17 22 22 N 6.18165 * 160.77642 * 332.79700 * 2 1 3 23 23 H 1.08999 * 109.47435 * 60.00274 * 1 2 3 24 24 H 1.09006 * 109.47157 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47429 * 299.99858 * 1 2 3 26 26 H 1.09003 * 109.47209 * 239.99575 * 2 1 3 27 27 H 1.09000 * 109.46819 * 120.00437 * 2 1 3 28 28 H 1.09003 * 109.46910 * 59.99945 * 3 2 1 29 29 H 1.09007 * 109.46985 * 300.00171 * 3 2 1 30 30 H 1.08996 * 109.46937 * 299.99682 * 4 3 2 31 31 H 1.09003 * 109.47215 * 60.00132 * 4 3 2 32 32 H 0.96999 * 120.00088 * 175.00055 * 9 8 6 33 33 H 1.07995 * 118.86665 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.2869 3.4694 1.1840 7 1 3.9986 3.0058 2.1158 8 6 4.8899 4.7206 1.1882 9 7 5.1021 5.3520 0.0544 10 14 5.3992 5.5066 2.8045 11 1 5.0533 4.5983 3.9272 12 1 6.8644 5.7483 2.7972 13 1 4.6853 6.7977 2.9736 14 6 4.2878 3.4739 -1.1968 15 7 3.3610 4.2684 -1.7252 16 6 3.5744 4.8908 -2.8657 17 7 4.7027 4.7624 -3.5379 18 6 5.6829 3.9936 -3.0909 19 17 7.1604 3.8376 -3.9889 20 6 5.5119 3.3131 -1.8791 21 6 6.5461 2.4747 -1.3515 22 7 7.3670 1.8102 -0.9304 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9285 0.8891 31 1 3.9330 0.9288 -0.8909 32 1 5.4561 6.2550 0.0610 33 1 2.7991 5.5276 -3.2652 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:01 Heat of formation + Delta-G solvation = 82.251575 kcal Electronic energy + Delta-G solvation = -19734.701485 eV Core-core repulsion = 16629.248177 eV Total energy + Delta-G solvation = -3105.453308 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.13155 -37.00306 -36.33804 -35.63874 -34.46776 -32.18370 -31.70631 -30.86509 -28.14132 -25.10502 -24.45150 -23.52692 -21.41165 -20.55602 -18.52554 -18.23710 -17.17300 -16.04655 -15.31385 -15.07027 -14.25158 -14.00717 -13.80495 -13.66758 -13.44150 -12.80237 -12.54670 -12.47076 -12.22350 -11.95243 -11.67943 -11.54506 -11.31644 -11.09375 -11.01077 -10.88551 -10.74313 -10.62655 -10.31427 -10.23020 -10.08281 -9.39478 -9.36929 -8.54698 -8.48238 -7.59672 -6.24380 -3.73266 1.26781 1.93253 2.11284 3.19560 3.25437 3.28467 3.44558 3.81199 4.03964 4.45803 4.55486 4.81259 4.95785 5.07353 5.23548 5.25860 5.43240 5.58341 5.68401 5.82033 6.00863 6.02093 6.10924 6.14553 6.23848 6.27589 6.42462 6.67370 6.81432 6.91801 7.33429 7.63784 7.78798 8.29194 8.71737 8.97478 9.26539 9.62013 10.80663 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.008533 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.558531 B = 3280.556889 C = 4450.734668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.137 4.137 4 C 0.151 3.849 5 N -0.548 5.548 6 C -0.254 4.254 7 H 0.097 0.903 8 C 0.001 3.999 9 N -0.903 5.903 10 Si 0.932 3.068 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.589 3.411 15 N -0.520 5.520 16 C 0.346 3.654 17 N -0.555 5.555 18 C 0.266 3.734 19 Cl -0.042 7.042 20 C -0.126 4.126 21 C 0.294 3.706 22 N -0.438 5.438 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.271 0.729 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 -4.597 -4.323 8.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.177 4.177 4 C 0.027 3.973 5 N -0.264 5.264 6 C -0.381 4.381 7 H 0.115 0.885 8 C -0.197 4.197 9 N -0.547 5.547 10 Si 0.761 3.239 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.350 3.650 15 N -0.239 5.239 16 C 0.056 3.944 17 N -0.275 5.275 18 C 0.090 3.910 19 Cl -0.013 7.013 20 C -0.141 4.141 21 C -0.021 4.021 22 N -0.115 5.115 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.248 -4.922 -3.999 7.633 hybrid contribution 0.679 0.730 0.873 1.325 sum -3.568 -4.192 -3.126 6.331 Atomic orbital electron populations 1.21744 0.96283 1.00798 1.01795 1.21493 0.95542 0.97653 1.01438 1.22171 0.97293 0.95295 1.02926 1.21032 0.92664 0.83025 1.00626 1.41495 1.74537 1.09909 1.00488 1.19571 1.32983 1.01749 0.83811 0.88511 1.24962 0.98693 0.97690 0.98384 1.68889 1.49092 1.12879 1.23878 0.85715 0.78226 0.78859 0.81120 1.19874 1.21140 1.21164 1.17448 0.84336 0.80367 0.82877 1.68557 1.34985 1.09544 1.10847 1.24498 0.91022 0.92347 0.86521 1.67652 1.02128 1.20369 1.37351 1.21736 0.88912 0.91964 0.88347 1.98382 1.31435 1.96086 1.75439 1.17800 0.94168 1.04705 0.97448 1.24858 0.92295 0.92433 0.92544 1.81058 1.10388 1.11267 1.08808 0.92908 0.93394 0.92843 0.92544 0.92311 0.91453 0.91968 0.91524 0.93710 0.91531 0.79501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.14 -2.20 5.54 -26.73 -0.15 -2.35 16 4 C 0.15 2.78 5.65 -4.04 -0.02 2.76 16 5 N -0.55 -12.28 2.08 -114.57 -0.24 -12.51 16 6 C -0.25 -6.20 9.78 -15.05 -0.15 -6.34 16 7 H 0.10 2.27 7.84 -52.49 -0.41 1.86 16 8 C 0.00 0.03 5.44 -17.45 -0.09 -0.07 16 9 N -0.90 -23.50 9.77 55.49 0.54 -22.96 16 10 Si 0.93 20.70 29.56 -169.99 -5.03 15.68 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 14 C 0.59 13.24 3.62 -154.71 -0.56 12.68 16 15 N -0.52 -11.19 9.88 -13.55 -0.13 -11.33 16 16 C 0.35 6.48 12.26 -92.13 -1.13 5.35 16 17 N -0.56 -10.76 10.41 -11.38 -0.12 -10.88 16 18 C 0.27 5.38 7.37 -16.66 -0.12 5.25 16 19 Cl -0.04 -0.74 28.32 -51.86 -1.47 -2.21 16 20 C -0.13 -2.77 5.08 -106.23 -0.54 -3.31 16 21 C 0.29 6.59 14.11 -22.44 -0.32 6.28 16 22 N -0.44 -9.97 18.54 41.88 0.78 -9.19 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 30 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 31 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 32 H 0.27 7.06 8.32 -40.82 -0.34 6.72 16 33 H 0.19 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -27.19 311.88 -7.60 -34.79 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -3.76 Total: -3.26 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: -2.87 Total: 17.19 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: 0.83 Total: -66.88 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.68 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.47 Total: -2.21 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.19 -7.60 -34.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.041 kcal (2) G-P(sol) polarization free energy of solvation -27.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds