Wall clock time and date at job start Tue Mar 31 2020 01:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47238 * 2 1 4 4 C 1.52999 * 109.47238 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47043 * 179.97438 * 4 3 2 6 6 C 1.36894 * 119.99988 * 89.99848 * 5 4 3 7 7 H 1.07999 * 119.99807 * 352.78031 * 6 5 4 8 8 C 1.38893 * 120.00055 * 172.77043 * 6 5 4 9 9 N 1.31495 * 119.99966 * 7.76751 * 8 6 5 10 10 Si 1.86802 * 119.99871 * 187.76512 * 8 6 5 11 11 H 1.48494 * 109.47225 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46774 * 120.00258 * 10 8 6 13 13 H 1.48503 * 109.46815 * 239.99922 * 10 8 6 14 14 C 1.38011 * 120.00024 * 269.99942 * 5 4 3 15 15 N 1.33026 * 120.63987 * 95.86754 * 14 5 4 16 16 C 1.31665 * 120.89366 * 180.02562 * 15 14 5 17 17 N 1.31953 * 122.26754 * 0.02562 * 16 15 14 18 18 C 1.32350 * 121.17925 * 359.97438 * 17 16 15 19 19 Cl 1.73604 * 120.51928 * 180.02562 * 18 17 16 20 20 C 1.40022 * 118.95494 * 359.72081 * 18 17 16 21 21 C 1.43209 * 121.00926 * 180.29443 * 20 18 17 22 22 N 6.18165 * 160.77642 * 332.79700 * 2 1 3 23 23 H 1.08999 * 109.47435 * 60.00274 * 1 2 3 24 24 H 1.09006 * 109.47157 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47429 * 299.99858 * 1 2 3 26 26 H 1.09003 * 109.47209 * 239.99575 * 2 1 3 27 27 H 1.09000 * 109.46819 * 120.00437 * 2 1 3 28 28 H 1.09003 * 109.46910 * 59.99945 * 3 2 1 29 29 H 1.09007 * 109.46985 * 300.00171 * 3 2 1 30 30 H 1.08996 * 109.46937 * 299.99682 * 4 3 2 31 31 H 1.09003 * 109.47215 * 60.00132 * 4 3 2 32 32 H 0.96999 * 120.00088 * 175.00055 * 9 8 6 33 33 H 1.07995 * 118.86665 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.2869 3.4694 1.1840 7 1 3.9986 3.0058 2.1158 8 6 4.8899 4.7206 1.1882 9 7 5.1021 5.3520 0.0544 10 14 5.3992 5.5066 2.8045 11 1 5.0533 4.5983 3.9272 12 1 6.8644 5.7483 2.7972 13 1 4.6853 6.7977 2.9736 14 6 4.2878 3.4739 -1.1968 15 7 3.3610 4.2684 -1.7252 16 6 3.5744 4.8908 -2.8657 17 7 4.7027 4.7624 -3.5379 18 6 5.6829 3.9936 -3.0909 19 17 7.1604 3.8376 -3.9889 20 6 5.5119 3.3131 -1.8791 21 6 6.5461 2.4747 -1.3515 22 7 7.3670 1.8102 -0.9304 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9285 0.8891 31 1 3.9330 0.9288 -0.8909 32 1 5.4561 6.2550 0.0610 33 1 2.7991 5.5276 -3.2652 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:01 Heat of formation + Delta-G solvation = 69.822093 kcal Electronic energy + Delta-G solvation = -19735.240468 eV Core-core repulsion = 16629.248177 eV Total energy + Delta-G solvation = -3105.992291 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73891 -38.57097 -37.89032 -37.33878 -35.77727 -33.86671 -33.36951 -32.42248 -29.52276 -26.85908 -26.02685 -24.93926 -22.88534 -21.80864 -20.24365 -19.90351 -18.77754 -17.65592 -17.06550 -16.32588 -15.92486 -15.56610 -15.34905 -15.12663 -14.69591 -14.53462 -14.21281 -13.84839 -13.70903 -13.44406 -13.24108 -13.11635 -12.92473 -12.69135 -12.45521 -12.37861 -12.15986 -11.96394 -11.87112 -11.74267 -11.35830 -11.11439 -10.98875 -10.18212 -10.13591 -9.32964 -8.10007 -5.59459 -0.34726 0.30583 0.55649 1.42268 1.46059 1.53317 1.69767 2.09674 2.31135 2.77827 2.91824 3.15817 3.21132 3.50903 3.88901 4.08204 4.15056 4.28679 4.40623 4.46320 4.55372 4.73025 4.92268 5.00490 5.04843 5.16827 5.32498 5.39989 5.46144 5.47797 5.60321 5.94845 6.04863 6.55430 6.90446 7.33110 7.55354 7.81679 8.91815 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.008533 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.558531 B = 3280.556889 C = 4450.734668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.123 4.123 4 C 0.147 3.853 5 N -0.563 5.563 6 C -0.256 4.256 7 H 0.100 0.900 8 C -0.044 4.044 9 N -0.922 5.922 10 Si 0.981 3.019 11 H -0.263 1.263 12 H -0.299 1.299 13 H -0.288 1.288 14 C 0.585 3.415 15 N -0.539 5.539 16 C 0.349 3.651 17 N -0.551 5.551 18 C 0.266 3.734 19 Cl -0.020 7.020 20 C -0.149 4.149 21 C 0.299 3.701 22 N -0.454 5.454 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.261 0.739 33 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 -5.016 -4.744 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.162 4.162 4 C 0.023 3.977 5 N -0.281 5.281 6 C -0.384 4.384 7 H 0.118 0.882 8 C -0.239 4.239 9 N -0.567 5.567 10 Si 0.809 3.191 11 H -0.187 1.187 12 H -0.226 1.226 13 H -0.215 1.215 14 C 0.346 3.654 15 N -0.258 5.258 16 C 0.061 3.939 17 N -0.270 5.270 18 C 0.090 3.910 19 Cl 0.009 6.991 20 C -0.163 4.163 21 C -0.016 4.016 22 N -0.131 5.131 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.068 -5.371 -4.429 8.611 hybrid contribution 0.920 0.838 0.901 1.537 sum -4.148 -4.532 -3.528 7.085 Atomic orbital electron populations 1.21721 0.94987 1.02018 1.01652 1.21459 0.96628 0.95286 1.02223 1.21990 0.95469 0.97307 1.01483 1.21228 0.94086 0.81458 1.00922 1.41691 1.75158 1.11107 1.00120 1.19780 1.32239 1.01531 0.84802 0.88190 1.25549 0.99522 0.98464 1.00411 1.69071 1.50208 1.12554 1.24898 0.84954 0.76736 0.78137 0.79264 1.18700 1.22638 1.21488 1.17616 0.84452 0.80314 0.83061 1.68574 1.35252 1.09952 1.12030 1.25354 0.91549 0.91531 0.85451 1.67819 1.02140 1.19869 1.37163 1.21925 0.89753 0.91221 0.88080 1.98386 1.30079 1.95941 1.74735 1.17889 0.94179 1.05766 0.98498 1.25017 0.92189 0.92200 0.92221 1.81041 1.10854 1.11905 1.09271 0.93057 0.91490 0.93036 0.91764 0.91520 0.92914 0.93268 0.91269 0.93247 0.92663 0.75368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.91 71.98 0.71 -2.31 16 2 C -0.12 -2.81 5.93 30.59 0.18 -2.63 16 3 C -0.12 -3.86 5.54 30.59 0.17 -3.69 16 4 C 0.15 5.32 5.65 86.38 0.49 5.81 16 5 N -0.56 -25.13 2.08 -516.38 -1.08 -26.20 16 6 C -0.26 -12.43 9.78 84.06 0.82 -11.61 16 7 H 0.10 4.66 7.84 -2.91 -0.02 4.64 16 8 C -0.04 -2.21 5.44 84.90 0.46 -1.74 16 9 N -0.92 -47.99 9.77 21.66 0.21 -47.78 16 10 Si 0.98 42.58 29.56 68.60 2.03 44.60 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 12 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 14 C 0.58 26.03 3.62 133.69 0.48 26.51 16 15 N -0.54 -22.70 9.88 -196.78 -1.94 -24.65 16 16 C 0.35 12.45 12.26 180.88 2.22 14.67 16 17 N -0.55 -20.40 10.41 -189.93 -1.98 -22.38 16 18 C 0.27 10.48 7.37 85.05 0.63 11.11 16 19 Cl -0.02 -0.68 28.32 -2.72 -0.08 -0.76 16 20 C -0.15 -6.45 5.08 -20.91 -0.11 -6.56 16 21 C 0.30 13.31 14.11 88.32 1.25 14.56 16 22 N -0.45 -20.51 18.54 19.02 0.35 -20.15 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 31 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 32 H 0.26 13.69 8.32 -92.71 -0.77 12.92 16 33 H 0.23 5.94 8.06 -2.91 -0.02 5.91 16 Total: -1.00 -56.75 311.88 5.95 -50.80 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.13 Total: 2.39 kcal Atomic # 6 Polarization: 36.82 SS G_CDS: 7.31 Total: 44.13 kcal Atomic # 7 Polarization: -136.73 SS G_CDS: -4.43 Total: -141.16 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -56.75 5.95 -50.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.620 kcal (2) G-P(sol) polarization free energy of solvation -56.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds