Wall clock time and date at job start Tue Mar 31 2020 01:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99791 * 2 1 4 4 H 1.48501 * 109.47052 * 269.99488 * 3 2 1 5 5 H 1.48499 * 109.47278 * 29.99533 * 3 2 1 6 6 H 1.48508 * 109.47093 * 149.99741 * 3 2 1 7 7 C 1.37871 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00270 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00405 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47061 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47311 * 180.02562 * 11 10 9 13 13 C 1.39640 * 120.00023 * 180.02562 * 12 11 10 14 14 C 1.36790 * 120.41605 * 0.02562 * 13 12 11 15 15 C 1.40271 * 119.54422 * 180.02562 * 14 13 12 16 16 Cl 1.73604 * 119.86669 * 179.97438 * 15 14 13 17 17 C 1.35266 * 120.26437 * 359.97438 * 15 14 13 18 18 N 1.36173 * 120.68644 * 359.97438 * 17 15 14 19 19 N 1.40221 * 133.14930 * 180.36827 * 18 17 15 20 20 C 1.31303 * 107.07468 * 180.09336 * 19 18 17 21 21 N 1.32469 * 109.60295 * 359.58841 * 20 19 18 22 22 C 1.32821 * 109.67730 * 0.26642 * 21 20 19 23 23 H 0.97004 * 120.00349 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46727 * 60.00016 * 9 7 2 25 25 H 1.08994 * 109.46800 * 300.00454 * 9 7 2 26 26 H 1.08998 * 109.47147 * 60.00391 * 10 9 7 27 27 H 1.08994 * 109.47688 * 300.00029 * 10 9 7 28 28 H 1.09000 * 109.47424 * 60.00224 * 11 10 9 29 29 H 1.09005 * 109.47149 * 300.00087 * 11 10 9 30 30 H 0.96996 * 120.00185 * 359.97438 * 12 11 10 31 31 H 1.07997 * 120.22489 * 0.02562 * 14 13 12 32 32 H 1.08005 * 119.65835 * 180.02562 * 17 15 14 33 33 H 1.08002 * 125.20204 * 179.85963 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6364 0.0023 11 6 5.5515 -2.6364 0.0035 12 7 6.0399 -4.0176 0.0040 13 6 7.4128 -4.2728 0.0057 14 6 8.3092 -3.2395 0.0074 15 6 9.6842 -3.5167 0.0085 16 17 10.8292 -2.2118 0.0100 17 6 10.1216 -4.7967 0.0084 18 7 9.2382 -5.8330 0.0078 19 7 9.3945 -7.2264 0.0141 20 6 8.1902 -7.7496 0.0077 21 7 7.2854 -6.7820 0.0067 22 6 7.8934 -5.6011 0.0067 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6586 -3.1508 -0.8875 27 1 3.6579 -3.1497 0.8924 28 1 5.9142 -2.1222 0.8935 29 1 5.9156 -2.1230 -0.8865 30 1 5.4096 -4.7549 0.0039 31 1 7.9606 -2.2173 0.0079 32 1 11.1826 -4.9990 0.0097 33 1 7.9708 -8.8070 0.0080 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168429148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:54 Heat of formation + Delta-G solvation = 106.252468 kcal Electronic energy + Delta-G solvation = -18379.065675 eV Core-core repulsion = 15274.653123 eV Total energy + Delta-G solvation = -3104.412552 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.90295 -38.75678 -37.27402 -36.28305 -34.22614 -32.59036 -31.36481 -31.00120 -29.17236 -26.97370 -24.27143 -23.79647 -22.46016 -21.80669 -20.43993 -18.48045 -17.64171 -16.92406 -16.66635 -16.51211 -15.98353 -15.09198 -15.01946 -14.50698 -14.12339 -13.69002 -13.45222 -12.98422 -12.85247 -12.75043 -12.05334 -12.00458 -11.68147 -11.61647 -11.43348 -11.16073 -10.92845 -10.39015 -10.16446 -9.97953 -9.79719 -9.68431 -9.42276 -9.30221 -8.61420 -7.50297 -6.11260 -4.10780 0.56257 0.59910 1.22853 2.24461 2.43991 3.11128 3.12011 3.25630 3.33808 3.35223 3.56724 4.07775 4.38317 4.45016 4.66227 4.79977 5.21999 5.24212 5.32716 5.41553 5.43565 5.72180 5.79987 6.01891 6.09766 6.27866 6.29082 6.38637 6.65705 6.91009 7.12503 7.25805 7.44443 7.68262 7.69633 8.44654 8.92774 9.50090 11.02020 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.003696 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.802456 B = 7573.028678 C = 8930.082037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.114 4.114 11 C 0.111 3.889 12 N -0.706 5.706 13 C 0.267 3.733 14 C -0.202 4.202 15 C 0.001 3.999 16 Cl -0.031 7.031 17 C 0.033 3.967 18 N -0.250 5.250 19 N -0.334 5.334 20 C 0.227 3.773 21 N -0.532 5.532 22 C 0.243 3.757 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.414 0.586 31 H 0.158 0.842 32 H 0.173 0.827 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.819 -8.820 0.034 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.152 4.152 11 C -0.011 4.011 12 N -0.330 5.330 13 C 0.153 3.847 14 C -0.236 4.236 15 C -0.030 4.030 16 Cl -0.002 7.002 17 C -0.097 4.097 18 N -0.025 5.025 19 N -0.166 5.166 20 C -0.074 4.074 21 N -0.262 5.262 22 C -0.014 4.014 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.251 0.749 31 H 0.175 0.825 32 H 0.190 0.810 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 21.880 -9.040 0.042 23.675 hybrid contribution 0.239 0.858 -0.022 0.891 sum 22.120 -8.182 0.020 23.584 Atomic orbital electron populations 1.69907 1.06348 1.27019 1.50727 1.25031 0.94748 0.99234 0.94437 0.86773 0.80348 0.83568 0.78557 1.20226 1.21334 1.18940 1.21079 0.89246 0.94585 1.51333 0.90973 1.19495 0.97464 0.91143 0.96620 1.21698 0.89970 1.01264 1.02261 1.21910 0.97318 0.80371 1.01539 1.45068 1.01585 1.09895 1.76457 1.16373 0.86555 0.86924 0.94816 1.20281 0.89563 0.99945 1.13848 1.19635 0.90892 0.88128 1.04391 1.98402 1.58791 1.46201 1.96833 1.20634 0.95864 0.83297 1.09866 1.47171 1.05949 1.05886 1.43521 1.78563 1.22594 0.82454 1.33015 1.26134 0.84998 1.00840 0.95393 1.70785 1.32358 0.95636 1.27403 1.21269 0.82386 0.94662 1.03104 0.92625 0.96277 0.96702 0.91810 0.91793 0.91478 0.91487 0.74882 0.82487 0.80963 0.75663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.52 -14.32 9.66 -34.44 -0.33 -14.65 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.20 4.04 -27.88 -0.11 -0.32 16 10 C -0.11 -1.97 5.27 -26.74 -0.14 -2.11 16 11 C 0.11 1.51 4.92 -4.04 -0.02 1.49 16 12 N -0.71 -9.03 5.74 -58.55 -0.34 -9.37 16 13 C 0.27 3.35 6.68 -83.68 -0.56 2.79 16 14 C -0.20 -2.22 9.14 -39.34 -0.36 -2.58 16 15 C 0.00 0.01 6.28 -39.88 -0.25 -0.24 16 16 Cl -0.03 -0.27 28.94 -51.86 -1.50 -1.77 16 17 C 0.03 0.34 10.95 -16.68 -0.18 0.16 16 18 N -0.25 -3.16 3.90 -12.15 -0.05 -3.21 16 19 N -0.33 -4.22 12.79 29.25 0.37 -3.85 16 20 C 0.23 2.57 12.98 -91.99 -1.19 1.38 16 21 N -0.53 -7.21 11.25 -13.88 -0.16 -7.36 16 22 C 0.24 3.27 7.76 -156.26 -1.21 2.06 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 25 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.87 7.96 -51.93 -0.41 0.45 16 29 H 0.07 0.86 7.96 -51.93 -0.41 0.45 16 30 H 0.41 5.33 8.50 -40.82 -0.35 4.98 16 31 H 0.16 1.58 6.74 -52.49 -0.35 1.23 16 32 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.23 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 302.57 15.07 4.56 4.56 Total: -1.00 -31.13 302.57 -9.03 -40.17 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -3.57 Total: 1.30 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -4.46 Total: -10.22 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.61 Total: -50.23 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.50 Total: -1.77 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.13 -9.03 -40.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.418 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds