Wall clock time and date at job start Tue Mar 31 2020 01:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99791 * 2 1 4 4 H 1.48501 * 109.47052 * 269.99488 * 3 2 1 5 5 H 1.48499 * 109.47278 * 29.99533 * 3 2 1 6 6 H 1.48508 * 109.47093 * 149.99741 * 3 2 1 7 7 C 1.37871 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00270 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00405 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47061 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47311 * 180.02562 * 11 10 9 13 13 C 1.39640 * 120.00023 * 180.02562 * 12 11 10 14 14 C 1.36790 * 120.41605 * 0.02562 * 13 12 11 15 15 C 1.40271 * 119.54422 * 180.02562 * 14 13 12 16 16 Cl 1.73604 * 119.86669 * 179.97438 * 15 14 13 17 17 C 1.35266 * 120.26437 * 359.97438 * 15 14 13 18 18 N 1.36173 * 120.68644 * 359.97438 * 17 15 14 19 19 N 1.40221 * 133.14930 * 180.36827 * 18 17 15 20 20 C 1.31303 * 107.07468 * 180.09336 * 19 18 17 21 21 N 1.32469 * 109.60295 * 359.58841 * 20 19 18 22 22 C 1.32821 * 109.67730 * 0.26642 * 21 20 19 23 23 H 0.97004 * 120.00349 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46727 * 60.00016 * 9 7 2 25 25 H 1.08994 * 109.46800 * 300.00454 * 9 7 2 26 26 H 1.08998 * 109.47147 * 60.00391 * 10 9 7 27 27 H 1.08994 * 109.47688 * 300.00029 * 10 9 7 28 28 H 1.09000 * 109.47424 * 60.00224 * 11 10 9 29 29 H 1.09005 * 109.47149 * 300.00087 * 11 10 9 30 30 H 0.96996 * 120.00185 * 359.97438 * 12 11 10 31 31 H 1.07997 * 120.22489 * 0.02562 * 14 13 12 32 32 H 1.08005 * 119.65835 * 180.02562 * 17 15 14 33 33 H 1.08002 * 125.20204 * 179.85963 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6364 0.0023 11 6 5.5515 -2.6364 0.0035 12 7 6.0399 -4.0176 0.0040 13 6 7.4128 -4.2728 0.0057 14 6 8.3092 -3.2395 0.0074 15 6 9.6842 -3.5167 0.0085 16 17 10.8292 -2.2118 0.0100 17 6 10.1216 -4.7967 0.0084 18 7 9.2382 -5.8330 0.0078 19 7 9.3945 -7.2264 0.0141 20 6 8.1902 -7.7496 0.0077 21 7 7.2854 -6.7820 0.0067 22 6 7.8934 -5.6011 0.0067 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6586 -3.1508 -0.8875 27 1 3.6579 -3.1497 0.8924 28 1 5.9142 -2.1222 0.8935 29 1 5.9156 -2.1230 -0.8865 30 1 5.4096 -4.7549 0.0039 31 1 7.9606 -2.2173 0.0079 32 1 11.1826 -4.9990 0.0097 33 1 7.9708 -8.8070 0.0080 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168429148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:53 Heat of formation + Delta-G solvation = 87.854996 kcal Electronic energy + Delta-G solvation = -18379.863449 eV Core-core repulsion = 15274.653123 eV Total energy + Delta-G solvation = -3105.210326 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.78724 -39.64775 -38.14882 -37.17894 -35.75219 -34.16572 -32.68452 -31.90320 -30.28159 -28.37933 -25.50703 -24.67052 -23.73125 -22.71785 -21.98954 -19.41843 -18.97665 -18.35043 -17.73940 -17.42520 -16.81775 -16.41541 -16.31529 -15.74419 -15.26431 -14.74236 -14.53833 -14.39830 -14.03291 -13.98746 -13.60509 -12.98068 -12.96734 -12.59423 -12.51269 -12.40734 -12.15161 -11.80107 -11.68834 -11.53271 -11.30697 -11.30591 -10.73742 -10.60887 -10.28517 -8.40762 -8.26603 -6.31695 -0.30772 -0.27136 0.43392 1.41006 1.41954 1.43026 1.54452 1.59327 2.16359 2.22172 2.39776 2.72333 3.09588 3.23864 3.67143 3.84201 3.97070 4.05521 4.22757 4.48140 4.54096 4.55943 4.86528 4.92068 4.94510 5.04471 5.17048 5.29923 5.48419 5.52245 5.59397 5.67270 5.95664 6.30023 6.45597 6.77529 6.80070 7.33286 8.90347 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.003696 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.802456 B = 7573.028678 C = 8930.082037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.236 1.236 7 C -0.535 4.535 8 H 0.028 0.972 9 C -0.008 4.008 10 C -0.105 4.105 11 C 0.126 3.874 12 N -0.712 5.712 13 C 0.250 3.750 14 C -0.189 4.189 15 C 0.001 3.999 16 Cl -0.013 7.013 17 C 0.036 3.964 18 N -0.257 5.257 19 N -0.353 5.353 20 C 0.229 3.771 21 N -0.559 5.559 22 C 0.226 3.774 23 H 0.265 0.735 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.411 0.589 31 H 0.171 0.829 32 H 0.196 0.804 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.849 -7.798 0.040 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.159 1.159 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.046 4.046 10 C -0.143 4.143 11 C 0.003 3.997 12 N -0.337 5.337 13 C 0.138 3.862 14 C -0.223 4.223 15 C -0.031 4.031 16 Cl 0.015 6.985 17 C -0.094 4.094 18 N -0.032 5.032 19 N -0.185 5.185 20 C -0.071 4.071 21 N -0.290 5.290 22 C -0.030 4.030 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.247 0.753 31 H 0.188 0.812 32 H 0.213 0.787 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 24.956 -8.040 0.048 26.219 hybrid contribution -0.675 0.460 -0.026 0.817 sum 24.282 -7.580 0.022 25.437 Atomic orbital electron populations 1.70084 1.08586 1.28184 1.52773 1.26097 0.95620 1.03871 0.94091 0.85612 0.79775 0.77721 0.79260 1.19147 1.21571 1.15919 1.21521 0.92446 0.92970 1.50389 0.95346 1.19444 0.93570 0.94202 0.97415 1.21469 0.93007 0.98319 1.01532 1.21643 0.94144 0.81104 1.02779 1.44855 1.01829 1.09302 1.77717 1.16434 0.86425 0.87064 0.96256 1.20528 0.89829 1.00152 1.11790 1.19667 0.90915 0.88541 1.03987 1.98415 1.58056 1.45280 1.96710 1.21119 0.96734 0.83056 1.08463 1.47353 1.06049 1.06300 1.43516 1.78517 1.23374 0.82590 1.34065 1.26896 0.84255 1.02123 0.93853 1.70784 1.33333 0.96251 1.28620 1.21466 0.82918 0.95037 1.03606 0.92595 0.95255 0.95383 0.92664 0.92679 0.90248 0.90193 0.75262 0.81187 0.78732 0.72159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.38 13.96 21.44 0.30 -59.08 16 2 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 3 Si 0.95 42.22 27.47 68.60 1.88 44.10 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 7 C -0.54 -29.76 9.66 25.60 0.25 -29.51 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.11 -3.56 5.27 30.59 0.16 -3.40 16 11 C 0.13 3.14 4.92 86.38 0.43 3.56 16 12 N -0.71 -17.35 5.74 -339.15 -1.95 -19.30 16 13 C 0.25 5.90 6.68 38.30 0.26 6.16 16 14 C -0.19 -3.67 9.14 22.42 0.20 -3.47 16 15 C 0.00 0.01 6.28 22.08 0.14 0.15 16 16 Cl -0.01 -0.19 28.94 -2.72 -0.08 -0.27 16 17 C 0.04 0.66 10.95 83.33 0.91 1.57 16 18 N -0.26 -6.14 3.90 -192.36 -0.75 -6.89 16 19 N -0.35 -8.48 12.79 -61.37 -0.78 -9.26 16 20 C 0.23 4.92 12.98 180.83 2.35 7.27 16 21 N -0.56 -14.81 11.25 -197.82 -2.23 -17.04 16 22 C 0.23 5.87 7.76 134.31 1.04 6.91 16 23 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 24 H 0.03 1.18 7.20 -2.39 -0.02 1.17 16 25 H 0.03 1.12 7.57 -2.39 -0.02 1.10 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.79 7.96 -2.39 -0.02 1.77 16 29 H 0.08 1.80 7.96 -2.38 -0.02 1.78 16 30 H 0.41 10.47 8.50 -92.71 -0.79 9.69 16 31 H 0.17 2.82 6.74 -2.91 -0.02 2.80 16 32 H 0.20 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.26 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -68.68 302.57 3.02 -65.66 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.30 Total: 12.65 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 6.32 Total: -10.56 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -5.41 Total: -111.58 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.10 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.08 Total: -0.27 kcal Total: -68.68 3.02 -65.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.515 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds