Wall clock time and date at job start Tue Mar 31 2020 01:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43199 * 119.99898 * 331.43996 * 3 2 1 5 5 N 3.51032 * 140.68506 * 331.44013 * 2 1 3 6 6 C 1.41167 * 119.99706 * 151.44120 * 3 2 1 7 7 C 1.38991 * 120.00051 * 354.75658 * 6 3 2 8 8 H 1.07997 * 120.00151 * 332.25722 * 7 6 3 9 9 C 1.40885 * 119.99573 * 152.24942 * 7 6 3 10 10 N 1.30307 * 120.00563 * 2.92534 * 9 7 6 11 11 Si 1.86801 * 119.99665 * 182.91674 * 9 7 6 12 12 H 1.48497 * 109.47137 * 60.00269 * 11 9 7 13 13 H 1.48503 * 109.47212 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47396 * 300.00607 * 11 9 7 15 15 N 1.38345 * 119.99998 * 174.76042 * 6 3 2 16 16 C 1.38353 * 119.99790 * 120.19682 * 15 6 3 17 17 C 1.36193 * 119.84323 * 353.92959 * 16 15 6 18 18 C 1.40009 * 120.25682 * 180.02562 * 17 16 15 19 19 C 1.36307 * 119.84127 * 359.97301 * 18 17 16 20 20 C 1.40658 * 119.40411 * 0.02562 * 19 18 17 21 21 N 1.32380 * 133.45392 * 180.02562 * 20 19 18 22 22 N 1.28670 * 109.53554 * 179.97438 * 21 20 19 23 23 C 1.30744 * 110.33803 * 359.74837 * 22 21 20 24 24 N 1.36311 * 107.47299 * 0.40449 * 23 22 21 25 25 H 0.96994 * 120.00489 * 185.00711 * 10 9 7 26 26 H 0.97000 * 119.99810 * 300.20252 * 15 6 3 27 27 H 1.07999 * 119.86662 * 359.97438 * 17 16 15 28 28 H 1.08004 * 120.07503 * 179.97438 * 18 17 16 29 29 H 1.08002 * 120.29755 * 179.97438 * 19 18 17 30 30 H 1.08000 * 126.26087 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2845 -1.0883 0.5929 5 7 3.8519 -1.9534 1.0633 6 6 3.2734 1.0748 -0.5845 7 6 2.5823 2.0769 -1.2553 8 1 1.6331 1.8588 -1.7222 9 6 3.1199 3.3772 -1.3261 10 7 4.2911 3.6270 -0.8122 11 14 2.1539 4.7433 -2.1568 12 1 0.8573 4.9288 -1.4570 13 1 2.9330 6.0062 -2.0993 14 1 1.9035 4.3808 -3.5750 15 7 4.6524 1.1300 -0.4896 16 6 5.4250 1.1387 -1.6373 17 6 4.8348 0.9683 -2.8528 18 6 5.6083 0.9751 -4.0198 19 6 6.9572 1.1535 -3.9385 20 6 7.5558 1.3285 -2.6777 21 7 8.8043 1.5192 -2.2812 22 7 8.8374 1.6241 -0.9992 23 6 7.6328 1.5145 -0.5031 24 7 6.7771 1.3177 -1.5458 25 1 4.6298 4.5357 -0.7960 26 1 5.0777 1.1625 0.3816 27 1 3.7660 0.8266 -2.9166 28 1 5.1372 0.8393 -4.9822 29 1 7.5610 1.1596 -4.8339 30 1 7.3654 1.5641 0.5421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079531.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:34 Heat of formation + Delta-G solvation = 172.500888 kcal Electronic energy + Delta-G solvation = -20673.714326 eV Core-core repulsion = 17471.067027 eV Total energy + Delta-G solvation = -3202.647298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.077 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.08316 -39.07790 -36.83821 -35.46055 -34.96923 -34.18794 -33.14075 -30.92578 -29.97341 -28.11344 -27.40400 -23.81162 -23.09595 -22.39300 -21.14734 -19.19684 -18.53778 -17.59492 -17.12488 -16.61525 -16.00398 -15.64642 -15.27902 -15.11394 -14.28271 -14.01327 -13.15749 -12.86372 -12.59230 -12.51050 -12.26009 -12.00003 -11.91454 -11.79899 -11.75668 -11.72212 -11.36875 -11.23911 -11.16002 -10.95990 -10.81635 -10.26768 -10.23945 -9.97296 -8.95696 -8.30976 -7.88750 -6.83182 -5.74944 1.17263 1.55302 1.93197 2.43050 2.56132 2.62126 2.73369 3.17187 3.23139 3.52089 3.63037 3.82297 3.85686 3.95882 4.10466 4.55337 4.87674 4.91563 5.10534 5.20503 5.32396 5.54125 5.67600 5.97108 6.00973 6.13143 6.29847 6.36604 6.59254 6.72324 6.73966 6.94339 7.06339 7.35917 7.46869 7.77972 8.01146 8.68850 8.87652 8.91038 8.96181 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.008160 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.986032 B = 3430.569446 C = 4573.501471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.323 3.677 3 C -0.292 4.292 4 C 0.303 3.697 5 N -0.522 5.522 6 C 0.378 3.622 7 C -0.375 4.375 8 H 0.117 0.883 9 C 0.072 3.928 10 N -0.733 5.733 11 Si 0.931 3.069 12 H -0.252 1.252 13 H -0.269 1.269 14 H -0.248 1.248 15 N -0.644 5.644 16 C 0.450 3.550 17 C -0.248 4.248 18 C -0.018 4.018 19 C -0.180 4.180 20 C 0.241 3.759 21 N -0.325 5.325 22 N -0.258 5.258 23 C 0.109 3.891 24 N -0.407 5.407 25 H 0.305 0.695 26 H 0.403 0.597 27 H 0.162 0.838 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 4.916 -5.661 7.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C 0.014 3.986 3 C -0.310 4.310 4 C -0.005 4.005 5 N -0.203 5.203 6 C 0.275 3.725 7 C -0.403 4.403 8 H 0.135 0.865 9 C -0.159 4.159 10 N -0.352 5.352 11 Si 0.752 3.248 12 H -0.175 1.175 13 H -0.193 1.193 14 H -0.172 1.172 15 N -0.264 5.264 16 C 0.240 3.760 17 C -0.276 4.276 18 C -0.043 4.043 19 C -0.204 4.204 20 C -0.007 4.007 21 N -0.170 5.170 22 N -0.096 5.096 23 C -0.174 4.174 24 N -0.092 5.092 25 H 0.117 0.883 26 H 0.240 0.760 27 H 0.179 0.821 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.354 3.943 -4.851 6.680 hybrid contribution -1.232 1.029 0.301 1.633 sum 1.122 4.971 -4.550 6.832 Atomic orbital electron populations 1.81098 1.12086 1.10578 1.16365 1.24569 0.91167 0.91875 0.90989 1.12902 0.83195 1.00251 1.34693 1.25241 0.92664 0.91648 0.90964 1.81140 1.09654 1.12394 1.17124 1.16639 0.78665 0.88662 0.88546 1.20323 1.04604 0.91808 1.23562 0.86531 1.26533 0.94596 1.01574 0.93187 1.69405 1.14535 1.25327 1.25940 0.85859 0.80337 0.77538 0.81029 1.17530 1.19310 1.17187 1.41260 1.04753 1.75272 1.05163 1.17005 0.77391 0.92458 0.89136 1.20389 1.02283 1.16509 0.88430 1.20851 0.92398 0.92568 0.98498 1.19798 0.94920 1.12627 0.93077 1.22300 0.87808 1.02174 0.88459 1.74916 1.13869 1.24849 1.03378 1.74026 1.18442 1.14418 1.02701 1.26139 0.85545 1.10496 0.95237 1.43838 1.06773 1.48859 1.09718 0.88268 0.76042 0.82105 0.84320 0.83802 0.76906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.15 18.54 41.84 0.78 -10.37 16 2 C 0.32 6.54 14.05 -22.47 -0.32 6.22 16 3 C -0.29 -5.55 5.88 -104.94 -0.62 -6.17 16 4 C 0.30 6.13 14.82 -22.46 -0.33 5.79 16 5 N -0.52 -11.27 18.54 41.86 0.78 -10.49 16 6 C 0.38 6.63 4.92 -83.53 -0.41 6.22 16 7 C -0.38 -6.43 6.52 -38.30 -0.25 -6.68 16 8 H 0.12 1.98 7.28 -52.49 -0.38 1.60 16 9 C 0.07 1.17 5.20 -17.20 -0.09 1.08 16 10 N -0.73 -12.32 10.92 55.60 0.61 -11.72 16 11 Si 0.93 13.21 29.57 -169.99 -5.03 8.18 16 12 H -0.25 -3.73 7.11 56.52 0.40 -3.33 16 13 H -0.27 -3.86 7.11 56.52 0.40 -3.45 16 14 H -0.25 -3.48 7.11 56.52 0.40 -3.08 16 15 N -0.64 -10.63 3.27 -9.67 -0.03 -10.67 16 16 C 0.45 7.44 6.17 -152.91 -0.94 6.50 16 17 C -0.25 -3.82 8.69 -39.65 -0.34 -4.17 16 18 C -0.02 -0.24 10.05 -39.61 -0.40 -0.64 16 19 C -0.18 -2.62 10.10 -39.36 -0.40 -3.02 16 20 C 0.24 4.26 7.92 -156.00 -1.23 3.02 16 21 N -0.32 -6.31 12.31 31.13 0.38 -5.93 16 22 N -0.26 -4.87 12.18 29.89 0.36 -4.51 16 23 C 0.11 1.81 12.53 -89.00 -1.11 0.69 16 24 N -0.41 -6.94 2.97 -63.18 -0.19 -7.13 16 25 H 0.31 4.89 8.29 -40.82 -0.34 4.55 16 26 H 0.40 6.36 8.29 -40.82 -0.34 6.02 16 27 H 0.16 2.44 6.01 -52.49 -0.32 2.13 16 28 H 0.14 1.35 8.06 -52.48 -0.42 0.92 16 29 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.21 2.78 7.88 -52.49 -0.41 2.37 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -24.50 290.35 -5.84 -30.35 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -1.43 Total: 9.05 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: -6.45 Total: 8.87 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 2.69 Total: -60.82 kcal Atomic # 14 Polarization: 13.21 SS G_CDS: -5.03 Total: 8.18 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -24.50 -5.84 -30.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079531.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.849 kcal (2) G-P(sol) polarization free energy of solvation -24.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds