Wall clock time and date at job start Tue Mar 31 2020 01:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43199 * 119.99898 * 331.43996 * 3 2 1 5 5 N 3.51032 * 140.68506 * 331.44013 * 2 1 3 6 6 C 1.41167 * 119.99706 * 151.44120 * 3 2 1 7 7 C 1.38991 * 120.00051 * 354.75658 * 6 3 2 8 8 H 1.07997 * 120.00151 * 332.25722 * 7 6 3 9 9 C 1.40885 * 119.99573 * 152.24942 * 7 6 3 10 10 N 1.30307 * 120.00563 * 2.92534 * 9 7 6 11 11 Si 1.86801 * 119.99665 * 182.91674 * 9 7 6 12 12 H 1.48497 * 109.47137 * 60.00269 * 11 9 7 13 13 H 1.48503 * 109.47212 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47396 * 300.00607 * 11 9 7 15 15 N 1.38345 * 119.99998 * 174.76042 * 6 3 2 16 16 C 1.38353 * 119.99790 * 120.19682 * 15 6 3 17 17 C 1.36193 * 119.84323 * 353.92959 * 16 15 6 18 18 C 1.40009 * 120.25682 * 180.02562 * 17 16 15 19 19 C 1.36307 * 119.84127 * 359.97301 * 18 17 16 20 20 C 1.40658 * 119.40411 * 0.02562 * 19 18 17 21 21 N 1.32380 * 133.45392 * 180.02562 * 20 19 18 22 22 N 1.28670 * 109.53554 * 179.97438 * 21 20 19 23 23 C 1.30744 * 110.33803 * 359.74837 * 22 21 20 24 24 N 1.36311 * 107.47299 * 0.40449 * 23 22 21 25 25 H 0.96994 * 120.00489 * 185.00711 * 10 9 7 26 26 H 0.97000 * 119.99810 * 300.20252 * 15 6 3 27 27 H 1.07999 * 119.86662 * 359.97438 * 17 16 15 28 28 H 1.08004 * 120.07503 * 179.97438 * 18 17 16 29 29 H 1.08002 * 120.29755 * 179.97438 * 19 18 17 30 30 H 1.08000 * 126.26087 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2845 -1.0883 0.5929 5 7 3.8519 -1.9534 1.0633 6 6 3.2734 1.0748 -0.5845 7 6 2.5823 2.0769 -1.2553 8 1 1.6331 1.8588 -1.7222 9 6 3.1199 3.3772 -1.3261 10 7 4.2911 3.6270 -0.8122 11 14 2.1539 4.7433 -2.1568 12 1 0.8573 4.9288 -1.4570 13 1 2.9330 6.0062 -2.0993 14 1 1.9035 4.3808 -3.5750 15 7 4.6524 1.1300 -0.4896 16 6 5.4250 1.1387 -1.6373 17 6 4.8348 0.9683 -2.8528 18 6 5.6083 0.9751 -4.0198 19 6 6.9572 1.1535 -3.9385 20 6 7.5558 1.3285 -2.6777 21 7 8.8043 1.5192 -2.2812 22 7 8.8374 1.6241 -0.9992 23 6 7.6328 1.5145 -0.5031 24 7 6.7771 1.3177 -1.5458 25 1 4.6298 4.5357 -0.7960 26 1 5.0777 1.1625 0.3816 27 1 3.7660 0.8266 -2.9166 28 1 5.1372 0.8393 -4.9822 29 1 7.5610 1.1596 -4.8339 30 1 7.3654 1.5641 0.5421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079531.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:34 Heat of formation + Delta-G solvation = 163.199030 kcal Electronic energy + Delta-G solvation = -20674.117684 eV Core-core repulsion = 17471.067027 eV Total energy + Delta-G solvation = -3203.050657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.077 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.37655 -40.38867 -38.19788 -36.95293 -36.57429 -35.47100 -34.45184 -32.29760 -31.28575 -29.36199 -28.83591 -25.08297 -24.33111 -23.73629 -22.48329 -20.65345 -19.81168 -19.00435 -18.36176 -17.95511 -17.31994 -16.91716 -16.53648 -16.34937 -15.45602 -15.26350 -14.69161 -14.42546 -13.94722 -13.90126 -13.57355 -13.49975 -13.40464 -13.15828 -13.00647 -12.92791 -12.81513 -12.69404 -12.57768 -12.13900 -12.04724 -11.59515 -11.49513 -11.30300 -10.25549 -9.69555 -9.19259 -8.10550 -7.20569 -0.06053 0.31333 0.61253 1.17249 1.39923 1.52745 1.57790 1.84684 2.00526 2.06997 2.20655 2.22862 2.54382 2.62557 2.66712 3.33170 3.36091 3.72645 3.75742 3.92523 4.03623 4.39462 4.42727 4.60142 4.64107 4.96494 5.05044 5.20048 5.32592 5.43153 5.53800 5.62919 5.82742 5.99965 6.11299 6.46315 6.68491 7.12980 7.31182 7.57952 7.64944 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.008160 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.986032 B = 3430.569446 C = 4573.501471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C 0.331 3.669 3 C -0.304 4.304 4 C 0.313 3.687 5 N -0.554 5.554 6 C 0.379 3.621 7 C -0.365 4.365 8 H 0.120 0.880 9 C 0.053 3.947 10 N -0.737 5.737 11 Si 0.979 3.021 12 H -0.261 1.261 13 H -0.269 1.269 14 H -0.240 1.240 15 N -0.644 5.644 16 C 0.433 3.567 17 C -0.250 4.250 18 C -0.004 4.004 19 C -0.184 4.184 20 C 0.227 3.773 21 N -0.359 5.359 22 N -0.286 5.286 23 C 0.110 3.890 24 N -0.410 5.410 25 H 0.310 0.690 26 H 0.404 0.596 27 H 0.165 0.835 28 H 0.182 0.818 29 H 0.169 0.831 30 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 5.966 -7.244 9.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.230 5.230 2 C 0.023 3.977 3 C -0.323 4.323 4 C 0.007 3.993 5 N -0.237 5.237 6 C 0.275 3.725 7 C -0.392 4.392 8 H 0.137 0.863 9 C -0.177 4.177 10 N -0.355 5.355 11 Si 0.799 3.201 12 H -0.185 1.185 13 H -0.194 1.194 14 H -0.163 1.163 15 N -0.265 5.265 16 C 0.224 3.776 17 C -0.277 4.277 18 C -0.028 4.028 19 C -0.208 4.208 20 C -0.021 4.021 21 N -0.205 5.205 22 N -0.123 5.123 23 C -0.174 4.174 24 N -0.095 5.095 25 H 0.122 0.878 26 H 0.241 0.759 27 H 0.182 0.818 28 H 0.200 0.800 29 H 0.186 0.814 30 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 1.814 4.983 -6.440 8.342 hybrid contribution -1.043 0.807 0.727 1.506 sum 0.770 5.790 -5.713 8.170 Atomic orbital electron populations 1.81096 1.12732 1.11447 1.17725 1.24714 0.91313 0.91257 0.90409 1.12880 0.82614 1.00699 1.36117 1.25396 0.92129 0.91386 0.90421 1.81138 1.10565 1.13380 1.18608 1.16560 0.79109 0.88257 0.88563 1.20533 1.04382 0.91973 1.22315 0.86268 1.27012 0.95055 1.02351 0.93319 1.69425 1.14981 1.25978 1.25132 0.85148 0.78761 0.75631 0.80556 1.18540 1.19369 1.16331 1.41146 1.04334 1.75664 1.05394 1.17196 0.77248 0.93619 0.89507 1.20714 1.02764 1.15458 0.88809 1.21285 0.91690 0.90325 0.99543 1.20236 0.95753 1.12111 0.92720 1.22832 0.87594 1.02052 0.89672 1.74824 1.15162 1.26728 1.03750 1.73941 1.19714 1.15700 1.02903 1.26666 0.85056 1.09332 0.96306 1.43890 1.06944 1.48923 1.09694 0.87756 0.75920 0.81776 0.80048 0.81391 0.74338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -23.15 18.54 19.01 0.35 -22.80 16 2 C 0.33 13.17 14.05 88.33 1.24 14.41 16 3 C -0.30 -11.33 5.88 -20.07 -0.12 -11.45 16 4 C 0.31 12.59 14.82 88.33 1.31 13.90 16 5 N -0.55 -23.94 18.54 19.01 0.35 -23.59 16 6 C 0.38 12.78 4.92 39.01 0.19 12.97 16 7 C -0.36 -11.75 6.52 23.10 0.15 -11.60 16 8 H 0.12 3.80 7.28 -2.91 -0.02 3.77 16 9 C 0.05 1.60 5.20 85.57 0.44 2.04 16 10 N -0.74 -23.21 10.92 21.99 0.24 -22.97 16 11 Si 0.98 24.66 29.57 68.60 2.03 26.69 16 12 H -0.26 -7.02 7.11 99.48 0.71 -6.31 16 13 H -0.27 -6.82 7.11 99.48 0.71 -6.11 16 14 H -0.24 -5.77 7.11 99.48 0.71 -5.06 16 15 N -0.64 -20.48 3.27 -184.49 -0.60 -21.09 16 16 C 0.43 13.61 6.17 131.26 0.81 14.42 16 17 C -0.25 -7.03 8.69 22.22 0.19 -6.84 16 18 C 0.00 -0.08 10.05 22.25 0.22 0.14 16 19 C -0.18 -4.87 10.10 22.41 0.23 -4.65 16 20 C 0.23 7.74 7.92 133.98 1.06 8.80 16 21 N -0.36 -13.89 12.31 -55.43 -0.68 -14.57 16 22 N -0.29 -10.79 12.18 -59.36 -0.72 -11.51 16 23 C 0.11 3.59 12.53 179.78 2.25 5.85 16 24 N -0.41 -13.52 2.97 -353.80 -1.05 -14.57 16 25 H 0.31 9.26 8.29 -92.71 -0.77 8.49 16 26 H 0.40 12.43 8.29 -92.71 -0.77 11.66 16 27 H 0.16 4.52 6.01 -2.91 -0.02 4.50 16 28 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.24 6.05 7.88 -2.91 -0.02 6.02 16 Total: -1.00 -51.75 290.35 8.37 -43.38 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.47 Total: 23.03 kcal Atomic # 6 Polarization: 30.02 SS G_CDS: 7.99 Total: 38.01 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -2.11 Total: -131.10 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: 2.03 Total: 26.69 kcal Total: -51.75 8.37 -43.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079531.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.575 kcal (2) G-P(sol) polarization free energy of solvation -51.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds