Wall clock time and date at job start Tue Mar 31 2020 01:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.43192 * 120.00359 * 290.52270 * 3 2 1 5 5 N 3.51039 * 140.68963 * 290.52918 * 2 1 3 6 6 C 1.41162 * 119.99456 * 110.52941 * 3 2 1 7 7 C 1.38984 * 120.00388 * 354.44496 * 6 3 2 8 8 H 1.08005 * 119.99985 * 341.00120 * 7 6 3 9 9 C 1.40842 * 120.00282 * 160.99839 * 7 6 3 10 10 N 1.30337 * 119.99938 * 349.95871 * 9 7 6 11 11 Si 1.86797 * 120.00154 * 169.95619 * 9 7 6 12 12 H 1.48501 * 109.47158 * 60.00181 * 11 9 7 13 13 H 1.48501 * 109.47053 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47284 * 300.00161 * 11 9 7 15 15 N 1.38334 * 119.99631 * 174.45449 * 6 3 2 16 16 C 1.39235 * 119.99980 * 118.09774 * 15 6 3 17 17 C 1.40987 * 120.34860 * 353.78650 * 16 15 6 18 18 C 1.34920 * 120.12373 * 180.02562 * 17 16 15 19 19 N 1.36034 * 120.82074 * 359.97438 * 18 17 16 20 20 N 1.40259 * 132.99713 * 179.97438 * 19 18 17 21 21 C 1.31175 * 107.14546 * 180.02562 * 20 19 18 22 22 N 1.32581 * 109.66967 * 0.22697 * 21 20 19 23 23 C 1.32977 * 109.63197 * 359.62294 * 22 21 20 24 24 C 1.38017 * 120.34187 * 173.80668 * 16 15 6 25 25 H 0.96994 * 119.99852 * 185.05071 * 10 9 7 26 26 H 0.96994 * 119.99974 * 298.09166 * 15 6 3 27 27 H 1.07995 * 119.93424 * 359.97438 * 17 16 15 28 28 H 1.08002 * 119.58481 * 179.97438 * 18 17 16 29 29 H 1.08002 * 125.16295 * 179.97438 * 21 20 19 30 30 H 1.07998 * 120.45828 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.4338 1.1613 5 7 3.8520 -0.7799 2.0827 6 6 3.2735 0.4297 -1.1449 7 6 2.5833 0.7414 -2.3103 8 1 1.5768 0.3776 -2.4555 9 6 3.1964 1.5316 -3.3019 10 7 4.3257 2.1319 -3.0509 11 14 2.3910 1.7193 -4.9769 12 1 1.0461 2.3276 -4.8141 13 1 3.2301 2.5944 -5.8344 14 1 2.2567 0.3846 -5.6140 15 7 4.6520 0.5397 -1.1070 16 6 5.4362 -0.2411 -1.9519 17 6 4.8441 -1.2376 -2.7544 18 6 5.6084 -1.9921 -3.5712 19 7 6.9544 -1.8058 -3.6350 20 7 7.9720 -2.4268 -4.3739 21 6 9.1005 -1.8463 -4.0418 22 7 8.8684 -0.9031 -3.1394 23 6 7.5666 -0.8499 -2.8734 24 6 6.8015 -0.0479 -2.0122 25 1 4.7110 2.7342 -3.7065 26 1 5.0721 1.1609 -0.4919 27 1 3.7768 -1.3979 -2.7147 28 1 5.1457 -2.7533 -4.1818 29 1 10.0716 -2.1009 -4.4398 30 1 7.2744 0.7102 -1.4056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:20 Heat of formation + Delta-G solvation = 177.294367 kcal Electronic energy + Delta-G solvation = -20343.251398 eV Core-core repulsion = 17140.811961 eV Total energy + Delta-G solvation = -3202.439438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.077 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.11548 -38.91242 -36.60976 -35.34980 -34.86902 -33.97650 -32.58464 -30.85985 -29.97321 -28.30842 -27.35399 -23.64157 -23.02528 -21.86689 -21.14481 -19.20438 -17.89485 -17.52801 -16.72336 -16.38675 -16.29712 -15.64892 -15.24621 -14.36089 -14.05310 -13.62389 -13.31995 -12.94419 -12.77161 -12.55450 -12.35489 -12.27158 -11.87722 -11.80588 -11.74228 -11.66030 -11.28866 -11.12656 -11.06084 -11.02225 -10.69870 -10.27589 -9.77349 -9.66773 -8.67207 -8.23273 -7.86759 -7.01633 -5.67944 1.16151 1.44494 2.02601 2.56333 2.56864 2.62895 2.72070 3.13606 3.23367 3.58027 3.74349 3.91015 3.92750 4.01227 4.20161 4.52224 4.59065 4.98663 5.04881 5.36531 5.41006 5.51926 5.63764 6.00496 6.04372 6.15317 6.40774 6.46609 6.67901 6.78132 6.83348 7.03588 7.21817 7.41834 7.53528 7.95233 8.19231 8.40814 8.81078 8.96426 8.99330 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.007095 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.141676 B = 3945.767641 C = 5134.611143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C 0.323 3.677 3 C -0.305 4.305 4 C 0.306 3.694 5 N -0.527 5.527 6 C 0.365 3.635 7 C -0.371 4.371 8 H 0.115 0.885 9 C 0.068 3.932 10 N -0.711 5.711 11 Si 0.922 3.078 12 H -0.251 1.251 13 H -0.268 1.268 14 H -0.248 1.248 15 N -0.636 5.636 16 C 0.313 3.687 17 C -0.179 4.179 18 C 0.130 3.870 19 N -0.314 5.314 20 N -0.372 5.372 21 C 0.233 3.767 22 N -0.579 5.579 23 C 0.328 3.672 24 C -0.230 4.230 25 H 0.307 0.693 26 H 0.411 0.589 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.214 0.786 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -0.176 -8.155 9.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C 0.014 3.986 3 C -0.323 4.323 4 C -0.002 4.002 5 N -0.209 5.209 6 C 0.262 3.738 7 C -0.398 4.398 8 H 0.133 0.867 9 C -0.165 4.165 10 N -0.329 5.329 11 Si 0.743 3.257 12 H -0.175 1.175 13 H -0.192 1.192 14 H -0.172 1.172 15 N -0.254 5.254 16 C 0.198 3.802 17 C -0.203 4.203 18 C 0.002 3.998 19 N -0.089 5.089 20 N -0.204 5.204 21 C -0.068 4.068 22 N -0.312 5.312 23 C 0.079 3.921 24 C -0.261 4.261 25 H 0.119 0.881 26 H 0.249 0.751 27 H 0.188 0.812 28 H 0.184 0.816 29 H 0.231 0.769 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.657 -1.037 -7.259 8.194 hybrid contribution 0.060 0.796 -0.807 1.135 sum 3.718 -0.241 -8.066 8.884 Atomic orbital electron populations 1.81087 1.12206 1.17670 1.09983 1.24670 0.91287 0.90618 0.91983 1.12891 0.83042 1.42577 0.93821 1.25190 0.92559 0.90687 0.91747 1.81114 1.09687 1.18074 1.11975 1.16761 0.80112 0.86366 0.90561 1.20403 1.01404 1.19803 0.98207 0.86698 1.26532 0.94046 0.93790 1.02146 1.69452 1.12914 1.13777 1.36795 0.85992 0.80649 0.80936 0.78080 1.17500 1.19204 1.17194 1.41457 1.03953 1.41042 1.38994 1.17445 0.89251 0.87066 0.86479 1.20951 1.02115 0.97744 0.99520 1.21169 0.79219 1.00088 0.99281 1.47523 1.06707 1.25401 1.29279 1.78306 0.95263 1.24463 1.22335 1.25916 0.97801 0.90513 0.92617 1.70948 1.11592 1.25922 1.22701 1.21250 0.88791 0.89688 0.92357 1.19303 0.90848 1.07339 1.08579 0.88095 0.75138 0.81248 0.81596 0.76922 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.52 18.54 41.84 0.78 -10.75 16 2 C 0.32 6.65 13.94 -22.47 -0.31 6.34 16 3 C -0.31 -5.87 5.88 -104.94 -0.62 -6.49 16 4 C 0.31 6.28 14.82 -22.47 -0.33 5.95 16 5 N -0.53 -11.55 18.54 41.85 0.78 -10.77 16 6 C 0.37 6.40 4.95 -83.54 -0.41 5.99 16 7 C -0.37 -6.36 6.99 -38.32 -0.27 -6.63 16 8 H 0.12 1.99 7.09 -52.48 -0.37 1.62 16 9 C 0.07 1.09 4.82 -17.20 -0.08 1.01 16 10 N -0.71 -11.76 10.94 55.60 0.61 -11.16 16 11 Si 0.92 13.07 29.58 -169.99 -5.03 8.04 16 12 H -0.25 -3.70 7.11 56.52 0.40 -3.30 16 13 H -0.27 -3.85 7.11 56.52 0.40 -3.44 16 14 H -0.25 -3.49 7.11 56.52 0.40 -3.09 16 15 N -0.64 -10.39 3.26 -8.01 -0.03 -10.41 16 16 C 0.31 5.03 5.14 -83.54 -0.43 4.60 16 17 C -0.18 -2.66 8.57 -39.72 -0.34 -3.00 16 18 C 0.13 1.88 11.18 -16.87 -0.19 1.69 16 19 N -0.31 -5.32 3.90 -12.41 -0.05 -5.37 16 20 N -0.37 -6.27 12.78 29.25 0.37 -5.89 16 21 C 0.23 3.60 12.98 -92.00 -1.19 2.41 16 22 N -0.58 -10.36 11.26 -14.03 -0.16 -10.52 16 23 C 0.33 5.86 7.87 -156.26 -1.23 4.63 16 24 C -0.23 -3.81 10.01 -38.86 -0.39 -4.20 16 25 H 0.31 4.78 8.29 -40.82 -0.34 4.44 16 26 H 0.41 6.45 8.83 -40.82 -0.36 6.09 16 27 H 0.17 2.38 6.33 -52.49 -0.33 2.04 16 28 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 29 H 0.21 2.27 8.06 -52.49 -0.42 1.84 16 30 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 291.98 15.07 4.40 4.40 Total: -1.00 -25.05 291.98 -5.59 -30.64 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -1.47 Total: 9.49 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: -5.80 Total: 12.30 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: 2.30 Total: -64.87 kcal Atomic # 14 Polarization: 13.07 SS G_CDS: -5.03 Total: 8.04 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -25.05 -5.59 -30.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.934 kcal (2) G-P(sol) polarization free energy of solvation -25.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds