Wall clock time and date at job start Tue Mar 31 2020 01:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.43192 * 120.00359 * 290.52270 * 3 2 1 5 5 N 3.51039 * 140.68963 * 290.52918 * 2 1 3 6 6 C 1.41162 * 119.99456 * 110.52941 * 3 2 1 7 7 C 1.38984 * 120.00388 * 354.44496 * 6 3 2 8 8 H 1.08005 * 119.99985 * 341.00120 * 7 6 3 9 9 C 1.40842 * 120.00282 * 160.99839 * 7 6 3 10 10 N 1.30337 * 119.99938 * 349.95871 * 9 7 6 11 11 Si 1.86797 * 120.00154 * 169.95619 * 9 7 6 12 12 H 1.48501 * 109.47158 * 60.00181 * 11 9 7 13 13 H 1.48501 * 109.47053 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47284 * 300.00161 * 11 9 7 15 15 N 1.38334 * 119.99631 * 174.45449 * 6 3 2 16 16 C 1.39235 * 119.99980 * 118.09774 * 15 6 3 17 17 C 1.40987 * 120.34860 * 353.78650 * 16 15 6 18 18 C 1.34920 * 120.12373 * 180.02562 * 17 16 15 19 19 N 1.36034 * 120.82074 * 359.97438 * 18 17 16 20 20 N 1.40259 * 132.99713 * 179.97438 * 19 18 17 21 21 C 1.31175 * 107.14546 * 180.02562 * 20 19 18 22 22 N 1.32581 * 109.66967 * 0.22697 * 21 20 19 23 23 C 1.32977 * 109.63197 * 359.62294 * 22 21 20 24 24 C 1.38017 * 120.34187 * 173.80668 * 16 15 6 25 25 H 0.96994 * 119.99852 * 185.05071 * 10 9 7 26 26 H 0.96994 * 119.99974 * 298.09166 * 15 6 3 27 27 H 1.07995 * 119.93424 * 359.97438 * 17 16 15 28 28 H 1.08002 * 119.58481 * 179.97438 * 18 17 16 29 29 H 1.08002 * 125.16295 * 179.97438 * 21 20 19 30 30 H 1.07998 * 120.45828 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.4338 1.1613 5 7 3.8520 -0.7799 2.0827 6 6 3.2735 0.4297 -1.1449 7 6 2.5833 0.7414 -2.3103 8 1 1.5768 0.3776 -2.4555 9 6 3.1964 1.5316 -3.3019 10 7 4.3257 2.1319 -3.0509 11 14 2.3910 1.7193 -4.9769 12 1 1.0461 2.3276 -4.8141 13 1 3.2301 2.5944 -5.8344 14 1 2.2567 0.3846 -5.6140 15 7 4.6520 0.5397 -1.1070 16 6 5.4362 -0.2411 -1.9519 17 6 4.8441 -1.2376 -2.7544 18 6 5.6084 -1.9921 -3.5712 19 7 6.9544 -1.8058 -3.6350 20 7 7.9720 -2.4268 -4.3739 21 6 9.1005 -1.8463 -4.0418 22 7 8.8684 -0.9031 -3.1394 23 6 7.5666 -0.8499 -2.8734 24 6 6.8015 -0.0479 -2.0122 25 1 4.7110 2.7342 -3.7065 26 1 5.0721 1.1609 -0.4919 27 1 3.7768 -1.3979 -2.7147 28 1 5.1457 -2.7533 -4.1818 29 1 10.0716 -2.1009 -4.4398 30 1 7.2744 0.7102 -1.4056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:19 Heat of formation + Delta-G solvation = 166.216593 kcal Electronic energy + Delta-G solvation = -20343.731767 eV Core-core repulsion = 17140.811961 eV Total energy + Delta-G solvation = -3202.919806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.077 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.36078 -40.22442 -37.98555 -36.85411 -36.50770 -35.29548 -33.90782 -32.22108 -31.19736 -29.62844 -28.79383 -24.84952 -24.34768 -23.12925 -22.46519 -20.67714 -19.18227 -18.96174 -18.03365 -17.64948 -17.56023 -16.91580 -16.53530 -15.55062 -15.28616 -14.88811 -14.58210 -14.44598 -14.35329 -13.87355 -13.70802 -13.61808 -13.38089 -13.32217 -13.13705 -13.02525 -12.68995 -12.65145 -12.36954 -12.27007 -12.01899 -11.52240 -11.07248 -10.95125 -10.00620 -9.54567 -9.16085 -8.33745 -7.16349 -0.04015 0.15160 0.69789 1.36931 1.40040 1.53404 1.56535 1.92747 2.05240 2.09367 2.26167 2.28736 2.57078 2.67866 2.69293 3.35166 3.41981 3.47195 3.78387 3.93600 4.20692 4.31655 4.46928 4.63546 4.67862 4.83482 5.13837 5.24083 5.39955 5.44631 5.62385 5.67548 5.98112 6.02083 6.16123 6.62198 6.84097 7.16099 7.22335 7.38216 7.67321 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.007095 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.141676 B = 3945.767641 C = 5134.611143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C 0.330 3.670 3 C -0.317 4.317 4 C 0.316 3.684 5 N -0.559 5.559 6 C 0.365 3.635 7 C -0.358 4.358 8 H 0.116 0.884 9 C 0.049 3.951 10 N -0.714 5.714 11 Si 0.968 3.032 12 H -0.259 1.259 13 H -0.268 1.268 14 H -0.241 1.241 15 N -0.635 5.635 16 C 0.313 3.687 17 C -0.186 4.186 18 C 0.136 3.864 19 N -0.322 5.322 20 N -0.387 5.387 21 C 0.235 3.765 22 N -0.605 5.605 23 C 0.310 3.690 24 C -0.238 4.238 25 H 0.314 0.686 26 H 0.412 0.588 27 H 0.180 0.820 28 H 0.200 0.800 29 H 0.255 0.745 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 -0.270 -10.001 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.239 5.239 2 C 0.023 3.977 3 C -0.336 4.336 4 C 0.010 3.990 5 N -0.242 5.242 6 C 0.261 3.739 7 C -0.385 4.385 8 H 0.133 0.867 9 C -0.183 4.183 10 N -0.332 5.332 11 Si 0.788 3.212 12 H -0.183 1.183 13 H -0.192 1.192 14 H -0.165 1.165 15 N -0.254 5.254 16 C 0.197 3.803 17 C -0.210 4.210 18 C 0.009 3.991 19 N -0.097 5.097 20 N -0.219 5.219 21 C -0.066 4.066 22 N -0.338 5.338 23 C 0.061 3.939 24 C -0.269 4.269 25 H 0.126 0.874 26 H 0.250 0.750 27 H 0.197 0.803 28 H 0.217 0.783 29 H 0.270 0.730 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.869 -1.136 -9.098 9.951 hybrid contribution 0.073 0.884 -0.348 0.953 sum 3.942 -0.252 -9.445 10.238 Atomic orbital electron populations 1.81083 1.12872 1.19135 1.10798 1.24832 0.91451 0.90048 0.91366 1.12889 0.82444 1.44117 0.94120 1.25352 0.92036 0.90091 0.91567 1.81111 1.10597 1.19684 1.12832 1.16681 0.80566 0.86470 0.90177 1.20587 1.01265 1.18512 0.98097 0.86662 1.26959 0.94268 0.93382 1.03696 1.69456 1.13020 1.13188 1.37506 0.85305 0.79442 0.81035 0.75409 1.18260 1.19229 1.16451 1.41397 1.03525 1.41212 1.39226 1.17554 0.89100 0.87178 0.86443 1.21084 1.02630 0.97686 0.99606 1.21705 0.78409 1.00132 0.98888 1.47711 1.07482 1.25304 1.29241 1.78261 0.95659 1.25068 1.22893 1.26740 0.99053 0.89262 0.91515 1.70943 1.11911 1.27138 1.23842 1.21458 0.89243 0.90307 0.92926 1.19357 0.91100 1.07606 1.08809 0.87368 0.74998 0.80327 0.78287 0.72969 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -24.06 18.54 19.01 0.35 -23.71 16 2 C 0.33 13.44 13.94 88.33 1.23 14.67 16 3 C -0.32 -12.02 5.88 -20.07 -0.12 -12.14 16 4 C 0.32 12.94 14.82 88.33 1.31 14.25 16 5 N -0.56 -24.61 18.54 19.01 0.35 -24.26 16 6 C 0.36 12.38 4.95 39.01 0.19 12.58 16 7 C -0.36 -11.63 6.99 23.09 0.16 -11.47 16 8 H 0.12 3.78 7.09 -2.91 -0.02 3.76 16 9 C 0.05 1.49 4.82 85.55 0.41 1.90 16 10 N -0.71 -22.23 10.94 21.98 0.24 -21.99 16 11 Si 0.97 24.50 29.58 68.60 2.03 26.53 16 12 H -0.26 -6.88 7.11 99.48 0.71 -6.18 16 13 H -0.27 -6.81 7.11 99.48 0.71 -6.11 16 14 H -0.24 -5.87 7.11 99.48 0.71 -5.16 16 15 N -0.64 -20.18 3.26 -179.24 -0.58 -20.77 16 16 C 0.31 9.69 5.14 38.59 0.20 9.89 16 17 C -0.19 -5.18 8.57 22.18 0.19 -4.99 16 18 C 0.14 3.61 11.18 83.28 0.93 4.54 16 19 N -0.32 -10.37 3.90 -193.17 -0.75 -11.13 16 20 N -0.39 -12.31 12.78 -61.38 -0.78 -13.09 16 21 C 0.23 6.82 12.98 180.83 2.35 9.16 16 22 N -0.60 -20.98 11.26 -198.29 -2.23 -23.21 16 23 C 0.31 10.75 7.87 133.96 1.05 11.80 16 24 C -0.24 -7.73 10.01 22.74 0.23 -7.51 16 25 H 0.31 9.10 8.29 -92.71 -0.77 8.33 16 26 H 0.41 12.76 8.83 -92.71 -0.82 11.94 16 27 H 0.18 4.63 6.33 -2.91 -0.02 4.61 16 28 H 0.20 3.81 8.06 -2.91 -0.02 3.78 16 29 H 0.25 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.15 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -51.91 291.98 7.18 -44.73 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.42 Total: 24.20 kcal Atomic # 6 Polarization: 34.56 SS G_CDS: 8.14 Total: 42.69 kcal Atomic # 7 Polarization: -134.74 SS G_CDS: -3.41 Total: -138.15 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: 2.03 Total: 26.53 kcal Total: -51.91 7.18 -44.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.947 kcal (2) G-P(sol) polarization free energy of solvation -51.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds