Wall clock time and date at job start Tue Mar 31 2020 01:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.43201 * 119.99847 * 284.30552 * 3 2 1 5 5 N 3.51041 * 140.68592 * 284.31205 * 2 1 3 6 6 C 1.41150 * 120.00097 * 104.30741 * 3 2 1 7 7 C 1.38991 * 119.99841 * 354.07374 * 6 3 2 8 8 H 1.07997 * 119.99967 * 335.19896 * 7 6 3 9 9 C 1.40840 * 120.00129 * 155.20797 * 7 6 3 10 10 N 1.30339 * 119.99939 * 359.47523 * 9 7 6 11 11 Si 1.86797 * 120.00293 * 179.47714 * 9 7 6 12 12 H 1.48500 * 109.47261 * 89.99404 * 11 9 7 13 13 H 1.48495 * 109.47502 * 209.99929 * 11 9 7 14 14 H 1.48503 * 109.46899 * 329.99562 * 11 9 7 15 15 N 1.38319 * 120.00414 * 174.06753 * 6 3 2 16 16 C 1.39349 * 119.99863 * 118.98952 * 15 6 3 17 17 C 1.39357 * 120.60580 * 354.46551 * 16 15 6 18 18 N 1.31319 * 121.34144 * 179.97438 * 17 16 15 19 19 C 1.33221 * 121.83575 * 0.02562 * 18 17 16 20 20 C 1.40054 * 119.35308 * 359.97438 * 19 18 17 21 21 C 1.37041 * 120.62849 * 359.73608 * 20 19 18 22 22 C 1.50974 * 104.18702 * 180.02562 * 20 19 18 23 23 N 1.47311 * 103.14797 * 359.97438 * 22 20 19 24 24 N 1.23115 * 109.26794 * 0.02562 * 23 22 20 25 25 H 0.97002 * 119.99897 * 185.02509 * 10 9 7 26 26 H 0.97000 * 119.99583 * 298.72570 * 15 6 3 27 27 H 1.08003 * 119.32947 * 359.97438 * 17 16 15 28 28 H 1.08004 * 120.97616 * 180.28119 * 21 20 19 29 29 H 1.09002 * 110.68215 * 118.41698 * 22 20 19 30 30 H 1.09002 * 110.68445 * 241.58627 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2842 -0.3055 1.2017 5 7 3.8520 -0.5498 2.1551 6 6 3.2737 0.3030 -1.1845 7 6 2.5842 0.4790 -2.3784 8 1 1.6184 0.0162 -2.5175 9 6 3.1452 1.2606 -3.4070 10 7 4.3063 1.8273 -3.2354 11 14 2.2253 1.4850 -5.0172 12 1 1.3499 2.6810 -4.9246 13 1 3.1996 1.6691 -6.1226 14 1 1.3948 0.2833 -5.2844 15 7 4.6513 0.4244 -1.1571 16 6 5.4414 -0.4302 -1.9233 17 6 4.8664 -1.4837 -2.6315 18 7 5.5971 -2.2974 -3.3584 19 6 6.9185 -2.1585 -3.4551 20 6 7.5517 -1.1171 -2.7650 21 6 6.8245 -0.2428 -2.0003 22 6 9.0124 -1.2786 -3.1106 23 7 9.0187 -2.4537 -3.9990 24 7 7.8667 -2.8664 -4.1348 25 1 4.6597 2.4241 -3.9136 26 1 5.0671 1.1070 -0.6074 27 1 3.7980 -1.6340 -2.5815 28 1 7.3064 0.5649 -1.4694 29 1 9.3837 -0.3976 -3.6343 30 1 9.6013 -1.4713 -2.2138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082844.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:04 Heat of formation + Delta-G solvation = 146.559973 kcal Electronic energy + Delta-G solvation = -20245.633241 eV Core-core repulsion = 17041.861060 eV Total energy + Delta-G solvation = -3203.772181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.077 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.91041 -40.50906 -38.54334 -37.02561 -36.56468 -35.33226 -33.89261 -32.47920 -30.22540 -29.59872 -28.85784 -25.43539 -24.19440 -22.62005 -22.08305 -20.70412 -19.13483 -19.00011 -18.11368 -17.64699 -17.50874 -17.01135 -16.44159 -15.34225 -15.07624 -14.72255 -14.59298 -14.49403 -14.33246 -13.94724 -13.91136 -13.50667 -13.45376 -13.38051 -13.28305 -13.04645 -12.97591 -12.71108 -12.67599 -12.15542 -11.72490 -11.59450 -11.49293 -10.62301 -10.31392 -9.86359 -9.30915 -8.38894 -7.21341 -0.67552 0.20239 0.48531 1.28812 1.36399 1.49315 1.51309 1.99136 2.05245 2.13483 2.22589 2.49565 2.56846 2.79481 2.89723 3.15265 3.35718 3.48946 3.71409 3.81381 3.86818 4.24437 4.35209 4.40762 4.57626 4.58271 4.64635 4.89703 5.01074 5.25206 5.37318 5.62868 5.94489 6.10680 6.50375 6.67215 6.80493 7.14916 7.31873 7.32946 7.63641 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.006947 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.986945 B = 4029.514372 C = 5230.867939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C 0.328 3.672 3 C -0.310 4.310 4 C 0.316 3.684 5 N -0.552 5.552 6 C 0.366 3.634 7 C -0.370 4.370 8 H 0.111 0.889 9 C 0.050 3.950 10 N -0.721 5.721 11 Si 0.971 3.029 12 H -0.255 1.255 13 H -0.265 1.265 14 H -0.253 1.253 15 N -0.625 5.625 16 C 0.247 3.753 17 C 0.050 3.950 18 N -0.418 5.418 19 C 0.067 3.933 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.027 4.027 23 N -0.161 5.161 24 N -0.148 5.148 25 H 0.314 0.686 26 H 0.414 0.586 27 H 0.170 0.830 28 H 0.169 0.831 29 H 0.169 0.831 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.215 4.371 -6.214 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.234 5.234 2 C 0.021 3.979 3 C -0.328 4.328 4 C 0.009 3.991 5 N -0.235 5.235 6 C 0.262 3.738 7 C -0.397 4.397 8 H 0.129 0.871 9 C -0.181 4.181 10 N -0.339 5.339 11 Si 0.791 3.209 12 H -0.179 1.179 13 H -0.189 1.189 14 H -0.177 1.177 15 N -0.243 5.243 16 C 0.134 3.866 17 C -0.122 4.122 18 N -0.128 5.128 19 C -0.167 4.167 20 C -0.136 4.136 21 C -0.158 4.158 22 C -0.157 4.157 23 N -0.059 5.059 24 N -0.041 5.041 25 H 0.126 0.874 26 H 0.253 0.747 27 H 0.187 0.813 28 H 0.187 0.813 29 H 0.186 0.814 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.606 2.525 -6.040 10.813 hybrid contribution -0.333 2.154 0.576 2.254 sum 8.273 4.679 -5.464 10.963 Atomic orbital electron populations 1.81080 1.12853 1.19463 1.10028 1.24835 0.91490 0.90048 0.91503 1.12927 0.82535 1.47456 0.89931 1.25290 0.92117 0.90025 0.91659 1.81102 1.10550 1.19858 1.11959 1.16719 0.80792 0.85971 0.90333 1.20576 1.03631 1.19138 0.96327 0.87063 1.26904 0.95091 0.93451 1.02684 1.69422 1.13784 1.14873 1.35868 0.85214 0.79259 0.80937 0.75482 1.17884 1.18871 1.17672 1.41384 1.03452 1.34226 1.45272 1.18799 0.90984 0.88636 0.88190 1.22663 1.00450 0.92231 0.96827 1.66480 1.05296 1.26023 1.15051 1.21577 0.92114 0.98426 1.04603 1.22217 0.98606 0.95947 0.96860 1.20057 0.90643 1.01873 1.03265 1.23540 0.91879 0.98695 1.01574 1.78118 1.11859 1.06778 1.09106 1.72450 0.97194 1.21894 1.12582 0.87354 0.74701 0.81305 0.81324 0.81409 0.81434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -24.46 18.54 19.01 0.35 -24.10 16 2 C 0.33 13.74 14.02 88.33 1.24 14.98 16 3 C -0.31 -11.98 5.88 -20.07 -0.12 -12.10 16 4 C 0.32 12.84 14.82 88.33 1.31 14.15 16 5 N -0.55 -23.76 18.54 19.01 0.35 -23.41 16 6 C 0.37 12.84 4.97 39.01 0.19 13.04 16 7 C -0.37 -12.90 6.72 23.09 0.16 -12.75 16 8 H 0.11 4.00 7.21 -2.91 -0.02 3.98 16 9 C 0.05 1.60 5.14 85.55 0.44 2.04 16 10 N -0.72 -22.30 10.87 21.98 0.24 -22.06 16 11 Si 0.97 26.98 29.57 68.60 2.03 29.00 16 12 H -0.25 -7.04 7.11 99.48 0.71 -6.34 16 13 H -0.26 -7.28 7.11 99.48 0.71 -6.57 16 14 H -0.25 -7.40 7.11 99.48 0.71 -6.69 16 15 N -0.63 -19.42 3.26 -179.10 -0.58 -20.01 16 16 C 0.25 7.70 5.23 38.59 0.20 7.90 16 17 C 0.05 1.76 9.92 85.04 0.84 2.60 16 18 N -0.42 -15.74 10.39 -193.30 -2.01 -17.74 16 19 C 0.07 2.32 8.36 133.89 1.12 3.44 16 20 C -0.13 -3.48 6.51 -19.62 -0.13 -3.61 16 21 C -0.13 -3.39 10.03 22.36 0.22 -3.17 16 22 C -0.03 -0.55 8.03 85.56 0.69 0.14 16 23 N -0.16 -4.41 12.77 -188.81 -2.41 -6.82 16 24 N -0.15 -4.96 11.95 -55.96 -0.67 -5.63 16 25 H 0.31 8.78 8.29 -92.71 -0.77 8.01 16 26 H 0.41 11.65 8.85 -92.71 -0.82 10.82 16 27 H 0.17 6.01 6.19 -2.91 -0.02 6.00 16 28 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.17 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.17 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -50.77 291.74 3.90 -46.88 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.43 Total: 17.26 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 6.17 Total: 26.64 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -4.73 Total: -119.78 kcal Atomic # 14 Polarization: 26.98 SS G_CDS: 2.03 Total: 29.00 kcal Total: -50.77 3.90 -46.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082844.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.435 kcal (2) G-P(sol) polarization free energy of solvation -50.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds