Wall clock time and date at job start Tue Mar 31 2020 01:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99778 * 2 1 4 4 H 1.48502 * 109.47207 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47169 * 120.00116 * 3 2 1 6 6 H 1.48506 * 109.47397 * 240.00161 * 3 2 1 7 7 C 1.37877 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47152 * 300.00268 * 9 7 2 11 11 O 1.42895 * 109.47022 * 60.00859 * 9 7 2 12 12 C 1.53001 * 109.47140 * 180.02562 * 9 7 2 13 13 S 1.81401 * 109.47329 * 180.02562 * 12 9 7 14 14 C 1.81406 * 103.00000 * 185.12727 * 13 12 9 15 15 H 1.09002 * 109.43366 * 53.15990 * 14 13 12 16 16 C 1.53064 * 109.43435 * 293.29372 * 14 13 12 17 17 C 1.53410 * 108.30222 * 191.74456 * 16 14 13 18 18 O 1.42826 * 108.37651 * 64.70736 * 17 16 14 19 19 C 1.35852 * 117.85641 * 310.80328 * 18 17 16 20 20 C 1.39144 * 118.49165 * 196.97673 * 19 18 17 21 21 C 1.37968 * 120.21134 * 180.43901 * 20 19 18 22 22 C 1.38290 * 119.95685 * 359.95465 * 21 20 19 23 23 C 1.38107 * 119.98537 * 359.93952 * 22 21 20 24 24 C 1.38371 * 121.80660 * 17.25148 * 19 18 17 25 25 H 0.96999 * 119.99544 * 179.97438 * 1 2 3 26 26 H 0.96699 * 114.00491 * 60.00112 * 11 9 7 27 27 H 1.09003 * 109.47386 * 300.00023 * 12 9 7 28 28 H 1.09003 * 109.47279 * 59.99957 * 12 9 7 29 29 H 1.09006 * 109.69580 * 311.44331 * 16 14 13 30 30 H 1.08994 * 109.70529 * 72.03727 * 16 14 13 31 31 H 1.08998 * 109.68190 * 304.98841 * 17 16 14 32 32 H 1.08996 * 109.71516 * 184.44764 * 17 16 14 33 33 H 1.07999 * 119.89615 * 0.42707 * 20 19 18 34 34 H 1.07998 * 120.02595 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.01065 * 179.91353 * 22 21 20 36 36 H 1.08000 * 119.83849 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4293 -2.5747 -1.1671 12 6 2.2454 -3.6621 -0.0005 13 16 1.3384 -5.2331 -0.0013 14 6 2.6591 -6.4667 0.1568 15 1 3.2789 -6.2258 1.0204 16 6 3.5217 -6.4542 -1.1076 17 6 4.4341 -7.6871 -1.0805 18 8 3.6153 -8.8549 -1.1563 19 6 2.5554 -8.9430 -0.3112 20 6 1.9682 -10.1884 -0.1104 21 6 0.8842 -10.3170 0.7334 22 6 0.3792 -9.2055 1.3831 23 6 0.9609 -7.9682 1.1878 24 6 2.0495 -7.8331 0.3422 25 1 -0.4849 -0.8401 -0.0004 26 1 0.9211 -2.5292 -1.9984 27 1 2.8721 -3.6043 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 2.8817 -6.4900 -1.9893 30 1 4.1281 -5.5488 -1.1298 31 1 5.0067 -7.6998 -0.1532 32 1 5.1144 -7.6599 -1.9317 33 1 2.3621 -11.0572 -0.6168 34 1 0.4306 -11.2850 0.8868 35 1 -0.4702 -9.3049 2.0427 36 1 0.5648 -7.1019 1.6966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188940087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:45 Heat of formation + Delta-G solvation = -79.007739 kcal Electronic energy + Delta-G solvation = -19203.013786 eV Core-core repulsion = 16163.859048 eV Total energy + Delta-G solvation = -3039.154738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71289 -37.57726 -36.26248 -34.44827 -32.19914 -30.80067 -30.33796 -29.70787 -25.99334 -24.74052 -23.79643 -22.59545 -21.40695 -20.13339 -17.93026 -17.46959 -16.82630 -16.30191 -15.91868 -15.14966 -14.88456 -14.52629 -14.28470 -14.05431 -13.83651 -13.79040 -13.40830 -13.40580 -12.78152 -12.48218 -12.18006 -11.76286 -11.58101 -11.42856 -11.24601 -10.98787 -10.83836 -10.55236 -10.24833 -10.15117 -9.69262 -9.30407 -8.85924 -8.55712 -8.26483 -8.16459 -7.23525 -6.44430 -4.30333 1.13064 1.35455 2.07052 3.01960 3.17024 3.37161 3.37811 3.57513 3.71316 4.41240 4.44983 4.50440 4.61077 4.90000 4.96942 5.00910 5.16850 5.25222 5.26953 5.38117 5.40431 5.46142 5.67242 5.72831 5.78848 5.90797 5.96330 6.04556 6.20421 6.40008 6.44221 6.48607 6.69347 7.30267 7.31806 7.82618 8.22238 8.75110 9.01252 9.55980 10.95380 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.003921 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.580575 B = 7138.712171 C = 7701.788019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.037 3.963 3 Si 1.069 2.931 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.650 4.650 8 H 0.050 0.950 9 C 0.231 3.769 10 H 0.058 0.942 11 O -0.573 6.573 12 C -0.098 4.098 13 S -0.231 6.231 14 C -0.027 4.027 15 H 0.092 0.908 16 C -0.154 4.154 17 C 0.065 3.935 18 O -0.316 6.316 19 C 0.139 3.861 20 C -0.155 4.155 21 C -0.086 4.086 22 C -0.154 4.154 23 C -0.068 4.068 24 C -0.138 4.138 25 H 0.286 0.714 26 H 0.354 0.646 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -18.122 0.350 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.173 4.173 3 Si 0.896 3.104 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.689 4.689 8 H 0.069 0.931 9 C 0.172 3.828 10 H 0.075 0.925 11 O -0.377 6.377 12 C -0.246 4.246 13 S 0.001 5.999 14 C -0.155 4.155 15 H 0.110 0.890 16 C -0.194 4.194 17 C -0.012 4.012 18 O -0.230 6.230 19 C 0.092 3.908 20 C -0.174 4.174 21 C -0.105 4.105 22 C -0.172 4.172 23 C -0.087 4.087 24 C -0.140 4.140 25 H 0.097 0.903 26 H 0.199 0.801 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.304 -16.796 0.603 17.624 hybrid contribution 2.176 -1.122 -0.124 2.452 sum 7.481 -17.919 0.479 19.423 Atomic orbital electron populations 1.70633 1.06915 1.32443 1.42074 1.25828 0.96472 1.02432 0.92555 0.83572 0.74947 0.75305 0.76550 1.20585 1.21386 1.21348 1.22341 0.94333 0.91865 1.60394 0.93130 1.19306 0.87949 0.89353 0.86217 0.92470 1.86518 1.38942 1.96295 1.15923 1.24486 1.02396 0.93961 1.03749 1.87259 1.14700 1.01023 1.96898 1.21928 0.98578 0.94578 1.00409 0.89015 1.22624 0.99121 0.99141 0.98481 1.23001 0.91825 0.83182 1.03152 1.85968 1.38249 1.42647 1.56177 1.18671 0.88356 0.93089 0.90645 1.20528 0.99178 0.95081 1.02570 1.20935 0.95137 0.98849 0.95549 1.21050 1.01436 0.92559 1.02186 1.21156 0.93543 0.98117 0.95902 1.19287 0.99875 0.92384 1.02431 0.90255 0.80060 0.91095 0.90703 0.89053 0.89535 0.91818 0.87203 0.85318 0.85493 0.85728 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.53 55.43 0.75 -26.02 16 2 C 0.04 1.03 5.40 -17.82 -0.10 0.94 16 3 Si 1.07 24.39 29.90 -169.99 -5.08 19.31 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.65 -17.61 8.76 -34.44 -0.30 -17.91 16 8 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 9 C 0.23 5.72 2.48 -27.88 -0.07 5.65 16 10 H 0.06 1.56 8.01 -51.93 -0.42 1.15 16 11 O -0.57 -14.38 11.61 -35.23 -0.41 -14.79 16 12 C -0.10 -1.95 5.38 37.16 0.20 -1.75 16 13 S -0.23 -4.19 19.28 -107.50 -2.07 -6.26 16 14 C -0.03 -0.39 2.81 -27.82 -0.08 -0.46 16 15 H 0.09 1.28 8.14 -51.92 -0.42 0.85 16 16 C -0.15 -1.94 5.32 -26.49 -0.14 -2.08 16 17 C 0.07 0.69 7.03 37.37 0.26 0.95 16 18 O -0.32 -4.10 10.27 -19.28 -0.20 -4.29 16 19 C 0.14 1.88 6.47 -39.20 -0.25 1.63 16 20 C -0.15 -1.82 9.94 -39.34 -0.39 -2.21 16 21 C -0.09 -0.92 10.04 -39.66 -0.40 -1.31 16 22 C -0.15 -1.79 10.04 -39.61 -0.40 -2.19 16 23 C -0.07 -0.94 9.02 -39.53 -0.36 -1.29 16 24 C -0.14 -1.97 5.44 -104.44 -0.57 -2.54 16 25 H 0.29 8.81 6.47 -40.82 -0.26 8.55 16 26 H 0.35 8.01 9.04 45.56 0.41 8.42 16 27 H 0.07 1.35 7.87 -51.92 -0.41 0.94 16 28 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 29 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 30 H 0.09 1.02 7.84 -51.93 -0.41 0.61 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.14 1.93 7.16 -52.49 -0.38 1.56 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -31.07 313.03 -8.93 -40.00 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.04 Total: 9.93 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.59 Total: -22.59 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.75 Total: -26.02 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.61 Total: -19.09 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.31 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -2.07 Total: -6.26 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.07 -8.93 -40.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188940087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.010 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds