Wall clock time and date at job start Tue Mar 31 2020 01:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99778 * 2 1 4 4 H 1.48502 * 109.47207 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47169 * 120.00116 * 3 2 1 6 6 H 1.48506 * 109.47397 * 240.00161 * 3 2 1 7 7 C 1.37877 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47152 * 300.00268 * 9 7 2 11 11 O 1.42895 * 109.47022 * 60.00859 * 9 7 2 12 12 C 1.53001 * 109.47140 * 180.02562 * 9 7 2 13 13 S 1.81401 * 109.47329 * 180.02562 * 12 9 7 14 14 C 1.81406 * 103.00000 * 185.12727 * 13 12 9 15 15 H 1.09002 * 109.43366 * 53.15990 * 14 13 12 16 16 C 1.53064 * 109.43435 * 293.29372 * 14 13 12 17 17 C 1.53410 * 108.30222 * 191.74456 * 16 14 13 18 18 O 1.42826 * 108.37651 * 64.70736 * 17 16 14 19 19 C 1.35852 * 117.85641 * 310.80328 * 18 17 16 20 20 C 1.39144 * 118.49165 * 196.97673 * 19 18 17 21 21 C 1.37968 * 120.21134 * 180.43901 * 20 19 18 22 22 C 1.38290 * 119.95685 * 359.95465 * 21 20 19 23 23 C 1.38107 * 119.98537 * 359.93952 * 22 21 20 24 24 C 1.38371 * 121.80660 * 17.25148 * 19 18 17 25 25 H 0.96999 * 119.99544 * 179.97438 * 1 2 3 26 26 H 0.96699 * 114.00491 * 60.00112 * 11 9 7 27 27 H 1.09003 * 109.47386 * 300.00023 * 12 9 7 28 28 H 1.09003 * 109.47279 * 59.99957 * 12 9 7 29 29 H 1.09006 * 109.69580 * 311.44331 * 16 14 13 30 30 H 1.08994 * 109.70529 * 72.03727 * 16 14 13 31 31 H 1.08998 * 109.68190 * 304.98841 * 17 16 14 32 32 H 1.08996 * 109.71516 * 184.44764 * 17 16 14 33 33 H 1.07999 * 119.89615 * 0.42707 * 20 19 18 34 34 H 1.07998 * 120.02595 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.01065 * 179.91353 * 22 21 20 36 36 H 1.08000 * 119.83849 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4293 -2.5747 -1.1671 12 6 2.2454 -3.6621 -0.0005 13 16 1.3384 -5.2331 -0.0013 14 6 2.6591 -6.4667 0.1568 15 1 3.2789 -6.2258 1.0204 16 6 3.5217 -6.4542 -1.1076 17 6 4.4341 -7.6871 -1.0805 18 8 3.6153 -8.8549 -1.1563 19 6 2.5554 -8.9430 -0.3112 20 6 1.9682 -10.1884 -0.1104 21 6 0.8842 -10.3170 0.7334 22 6 0.3792 -9.2055 1.3831 23 6 0.9609 -7.9682 1.1878 24 6 2.0495 -7.8331 0.3422 25 1 -0.4849 -0.8401 -0.0004 26 1 0.9211 -2.5292 -1.9984 27 1 2.8721 -3.6043 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 2.8817 -6.4900 -1.9893 30 1 4.1281 -5.5488 -1.1298 31 1 5.0067 -7.6998 -0.1532 32 1 5.1144 -7.6599 -1.9317 33 1 2.3621 -11.0572 -0.6168 34 1 0.4306 -11.2850 0.8868 35 1 -0.4702 -9.3049 2.0427 36 1 0.5648 -7.1019 1.6966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188940087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:44 Heat of formation + Delta-G solvation = -98.510634 kcal Electronic energy + Delta-G solvation = -19203.859495 eV Core-core repulsion = 16163.859048 eV Total energy + Delta-G solvation = -3040.000447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66152 -38.50066 -38.25931 -35.46989 -34.33571 -31.89471 -31.51300 -31.15712 -27.15896 -26.60860 -24.76138 -23.65180 -23.26444 -21.10454 -19.54295 -18.89502 -17.88081 -17.38962 -17.25355 -16.54845 -16.38891 -15.97910 -15.68661 -15.42138 -15.31858 -14.92488 -14.74128 -14.40180 -14.33260 -13.77318 -13.53407 -13.41970 -12.66103 -12.61150 -12.55480 -12.38038 -12.24920 -11.94381 -11.87837 -11.62645 -11.50044 -10.79892 -10.66331 -10.23546 -9.82055 -9.21060 -8.70191 -8.65691 -6.53812 0.09621 0.39050 0.78870 1.52933 1.59946 1.60530 1.80068 2.28954 2.55177 2.76277 3.12325 3.39205 3.48868 3.65849 3.86806 3.97641 3.99747 4.04834 4.17496 4.18468 4.26877 4.41220 4.47497 4.50088 4.57450 4.71677 4.82559 4.91227 5.01978 5.27770 5.28200 5.44921 5.55298 5.72504 5.80416 6.05187 6.38349 6.48012 7.08110 7.43382 8.70618 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.003921 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.580575 B = 7138.712171 C = 7701.788019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.015 4.015 3 Si 1.118 2.882 4 H -0.287 1.287 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.657 4.657 8 H 0.058 0.942 9 C 0.230 3.770 10 H 0.021 0.979 11 O -0.584 6.584 12 C -0.082 4.082 13 S -0.264 6.264 14 C -0.012 4.012 15 H 0.096 0.904 16 C -0.151 4.151 17 C 0.066 3.934 18 O -0.324 6.324 19 C 0.126 3.874 20 C -0.159 4.159 21 C -0.077 4.077 22 C -0.157 4.157 23 C -0.089 4.089 24 C -0.160 4.160 25 H 0.267 0.733 26 H 0.364 0.636 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.145 0.855 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.903 -19.751 0.034 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.939 3.061 4 H -0.212 1.212 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.696 4.696 8 H 0.076 0.924 9 C 0.171 3.829 10 H 0.039 0.961 11 O -0.390 6.390 12 C -0.231 4.231 13 S -0.031 6.031 14 C -0.140 4.140 15 H 0.114 0.886 16 C -0.191 4.191 17 C -0.010 4.010 18 O -0.239 6.239 19 C 0.079 3.921 20 C -0.177 4.177 21 C -0.095 4.095 22 C -0.175 4.175 23 C -0.108 4.108 24 C -0.162 4.162 25 H 0.077 0.923 26 H 0.210 0.790 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.173 -18.438 0.282 19.786 hybrid contribution 1.577 -0.793 -0.009 1.766 sum 8.751 -19.231 0.273 21.130 Atomic orbital electron populations 1.70781 1.08176 1.31259 1.45139 1.27387 0.96406 1.06568 0.91434 0.82940 0.74089 0.70953 0.78101 1.21229 1.19384 1.19121 1.22742 0.94870 0.92962 1.59027 0.92369 1.19094 0.87917 0.90937 0.84919 0.96085 1.86470 1.39558 1.96447 1.16486 1.24052 1.01020 0.93572 1.04420 1.87330 1.17345 1.01413 1.97055 1.21950 0.97068 0.93287 1.01693 0.88629 1.22585 0.99030 1.00830 0.96616 1.23207 0.91325 0.81261 1.05199 1.85957 1.38265 1.43505 1.56135 1.18907 0.88898 0.93514 0.90731 1.20911 0.99182 0.95106 1.02529 1.21354 0.94230 0.99943 0.93973 1.21351 1.01772 0.92054 1.02335 1.21200 0.94267 0.98771 0.96597 1.19335 1.00804 0.92389 1.03652 0.92261 0.78968 0.89961 0.90308 0.90548 0.88680 0.90550 0.84301 0.83243 0.81949 0.83727 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.86 13.53 21.45 0.29 -56.57 16 2 C -0.02 -0.87 5.40 84.65 0.46 -0.42 16 3 Si 1.12 48.60 29.90 68.60 2.05 50.65 16 4 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.66 -35.81 8.76 25.60 0.22 -35.59 16 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.23 11.72 2.48 29.85 0.07 11.80 16 10 H 0.02 1.23 8.01 -2.39 -0.02 1.21 16 11 O -0.58 -30.24 11.61 -148.98 -1.73 -31.97 16 12 C -0.08 -3.31 5.38 71.98 0.39 -2.93 16 13 S -0.26 -9.75 19.28 -56.49 -1.09 -10.84 16 14 C -0.01 -0.34 2.81 29.89 0.08 -0.25 16 15 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 16 C -0.15 -3.60 5.32 30.75 0.16 -3.43 16 17 C 0.07 1.24 7.03 72.12 0.51 1.75 16 18 O -0.32 -7.71 10.27 -91.89 -0.94 -8.66 16 19 C 0.13 3.22 6.47 22.52 0.15 3.36 16 20 C -0.16 -3.32 9.94 22.42 0.22 -3.10 16 21 C -0.08 -1.41 10.04 22.22 0.22 -1.18 16 22 C -0.16 -3.40 10.04 22.25 0.22 -3.17 16 23 C -0.09 -2.44 9.02 22.30 0.20 -2.24 16 24 C -0.16 -4.47 5.44 -19.75 -0.11 -4.58 16 25 H 0.27 17.20 6.47 -92.71 -0.60 16.60 16 26 H 0.36 16.78 9.04 -74.06 -0.67 16.12 16 27 H 0.08 3.08 7.87 -2.39 -0.02 3.06 16 28 H 0.08 3.05 8.14 -2.39 -0.02 3.04 16 29 H 0.08 2.06 8.11 -2.38 -0.02 2.04 16 30 H 0.09 2.07 7.84 -2.39 -0.02 2.05 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 36 H 0.12 3.58 7.16 -2.91 -0.02 3.56 16 Total: -1.00 -68.41 313.03 1.97 -66.44 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.58 Total: 30.92 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 2.81 Total: -39.98 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.29 Total: -56.57 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -2.67 Total: -40.62 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.05 Total: 50.65 kcal Atomic # 16 Polarization: -9.75 SS G_CDS: -1.09 Total: -10.84 kcal Total: -68.41 1.97 -66.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188940087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.066 kcal (2) G-P(sol) polarization free energy of solvation -68.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds