Wall clock time and date at job start Tue Mar 31 2020 01:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36888 * 119.99505 * 2 1 4 4 H 1.08002 * 120.00027 * 187.82611 * 3 2 1 5 5 C 1.39040 * 120.00228 * 7.83129 * 3 2 1 6 6 N 1.31366 * 119.99985 * 7.92480 * 5 3 2 7 7 Si 1.86797 * 119.99921 * 187.93239 * 5 3 2 8 8 H 1.48500 * 109.47467 * 89.99977 * 7 5 3 9 9 H 1.48503 * 109.46952 * 209.99614 * 7 5 3 10 10 H 1.48495 * 109.47196 * 329.99638 * 7 5 3 11 11 C 1.34775 * 120.00331 * 180.02562 * 2 1 3 12 12 O 1.21598 * 119.99990 * 183.50889 * 11 2 1 13 13 C 1.47661 * 119.99782 * 3.78890 * 11 2 1 14 14 C 1.40157 * 120.55245 * 305.67293 * 13 11 2 15 15 C 1.38229 * 118.30585 * 179.80772 * 14 13 11 16 16 C 1.38580 * 119.29705 * 0.47386 * 15 14 13 17 17 Cl 1.73596 * 119.46727 * 179.74510 * 16 15 14 18 18 N 1.32041 * 121.06187 * 359.76746 * 16 15 14 19 19 C 1.31687 * 121.86835 * 359.97438 * 18 16 15 20 20 C 1.50701 * 119.71461 * 179.97438 * 19 18 16 21 21 C 1.53003 * 117.49788 * 13.16973 * 20 19 18 22 22 C 1.52996 * 117.49771 * 304.54525 * 20 19 18 23 23 H 1.09001 * 109.47025 * 174.13851 * 1 2 3 24 24 H 1.09006 * 109.47179 * 294.12519 * 1 2 3 25 25 H 1.08999 * 109.47922 * 54.12944 * 1 2 3 26 26 H 0.96999 * 120.00317 * 180.02562 * 6 5 3 27 27 H 1.08007 * 120.84465 * 0.02562 * 14 13 11 28 28 H 1.07996 * 120.35247 * 180.22147 * 15 14 13 29 29 H 1.09000 * 115.54674 * 158.86975 * 20 19 18 30 30 H 1.09000 * 117.49793 * 359.97438 * 21 20 19 31 31 H 1.08998 * 117.49812 * 145.02113 * 21 20 19 32 32 H 1.09006 * 117.49570 * 214.97669 * 22 20 19 33 33 H 1.08995 * 117.50447 * 359.97364 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.2218 1.1900 -0.1274 5 6 1.4638 2.3840 0.1641 6 7 0.1872 2.3734 0.4737 7 14 2.3580 4.0092 -0.0561 8 1 2.2649 4.4373 -1.4750 9 1 1.7346 5.0389 0.8136 10 1 3.7854 3.8434 0.3183 11 6 2.1389 -1.1671 -0.0005 12 8 3.3532 -1.1681 0.0639 13 6 1.4031 -2.4445 -0.0856 14 6 0.3830 -2.7413 0.8286 15 6 -0.2782 -3.9488 0.7037 16 6 0.0918 -4.8233 -0.3057 17 17 -0.7312 -6.3437 -0.4626 18 7 1.0604 -4.5188 -1.1498 19 6 1.7158 -3.3791 -1.0742 20 6 2.8136 -3.0816 -2.0629 21 6 2.9142 -3.9791 -3.2980 22 6 3.9525 -4.0964 -2.1803 23 1 -0.3633 -1.0223 -0.1050 24 1 -0.3634 0.4201 0.9379 25 1 -0.3635 0.6021 -0.8327 26 1 -0.2912 3.2095 0.5878 27 1 0.1179 -2.0429 1.6086 28 1 -1.0719 -4.2097 1.3879 29 1 3.0638 -2.0277 -2.1845 30 1 2.1867 -4.7849 -3.3952 31 1 3.2308 -3.5157 -4.2324 32 1 4.9522 -3.7101 -2.3795 33 1 3.9081 -4.9789 -1.5422 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197268908.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:00 Heat of formation + Delta-G solvation = 37.531459 kcal Electronic energy + Delta-G solvation = -19536.155269 eV Core-core repulsion = 16396.469999 eV Total energy + Delta-G solvation = -3139.685269 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48519 -38.16638 -36.91731 -36.23798 -34.83382 -32.63093 -31.52281 -30.65345 -26.58304 -25.14490 -24.41997 -23.35018 -22.05287 -20.66206 -19.69038 -17.21156 -17.14375 -16.59299 -16.01958 -15.30054 -14.90778 -14.46247 -14.09404 -13.98409 -13.77722 -13.31936 -13.19905 -12.36673 -12.01006 -11.81277 -11.64575 -11.35056 -11.29616 -11.22237 -11.11551 -11.03555 -10.48510 -10.44909 -10.30864 -10.19227 -9.54052 -9.47078 -9.21564 -8.63817 -8.35970 -8.01103 -6.42641 -3.96740 0.94966 1.29620 1.86337 3.05886 3.16447 3.21674 3.47539 3.85261 3.98670 4.32793 4.37716 4.64849 4.80298 4.98304 5.08378 5.24235 5.25852 5.37526 5.44941 5.56638 5.77643 5.90913 6.06596 6.10528 6.19844 6.33746 6.42442 6.51538 6.63074 6.88937 7.22804 7.40574 7.82778 7.93653 8.30684 9.00552 9.23542 9.78985 10.51053 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.005303 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.445561 B = 5279.150650 C = 6183.181533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.426 5.426 3 C -0.299 4.299 4 H 0.109 0.891 5 C 0.029 3.971 6 N -0.878 5.878 7 Si 0.934 3.066 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.267 1.267 11 C 0.469 3.531 12 O -0.581 6.581 13 C -0.124 4.124 14 C -0.040 4.040 15 C -0.165 4.165 16 C 0.176 3.824 17 Cl -0.044 7.044 18 N -0.481 5.481 19 C 0.209 3.791 20 C -0.106 4.106 21 C -0.165 4.165 22 C -0.150 4.150 23 H 0.029 0.971 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.270 0.730 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 -10.128 -1.951 10.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.142 5.142 3 C -0.427 4.427 4 H 0.126 0.874 5 C -0.174 4.174 6 N -0.518 5.518 7 Si 0.761 3.239 8 H -0.202 1.202 9 H -0.207 1.207 10 H -0.192 1.192 11 C 0.256 3.744 12 O -0.467 6.467 13 C -0.130 4.130 14 C -0.067 4.067 15 C -0.186 4.186 16 C 0.011 3.989 17 Cl -0.016 7.016 18 N -0.192 5.192 19 C 0.071 3.929 20 C -0.124 4.124 21 C -0.202 4.202 22 C -0.188 4.188 23 H 0.047 0.953 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.148 0.852 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.604 -10.646 -2.536 11.249 hybrid contribution -0.329 1.282 0.660 1.479 sum -2.934 -9.364 -1.876 9.991 Atomic orbital electron populations 1.22049 0.80303 0.97039 1.04843 1.43664 1.06167 1.04688 1.59685 1.19871 0.94212 0.81829 1.46772 0.87366 1.25399 0.95928 1.00070 0.96026 1.70074 1.08509 1.27857 1.45374 0.85783 0.79559 0.80233 0.78366 1.20154 1.20732 1.19154 1.17396 0.87286 0.82363 0.87321 1.90647 1.12832 1.86227 1.57009 1.21134 0.97143 0.98159 0.96529 1.21831 0.92179 0.95275 0.97385 1.21662 1.02999 0.94332 0.99624 1.21530 0.94263 0.89146 0.93945 1.98376 1.75826 1.29805 1.97552 1.66547 1.07106 1.19610 1.25943 1.20193 0.93044 0.86859 0.92821 1.20945 0.96001 0.98639 0.96854 1.22981 1.02518 1.02416 0.92271 1.22846 0.94094 1.00018 1.01855 0.95260 0.89682 0.92103 0.91967 0.83222 0.83734 0.85170 0.87794 0.88745 0.88363 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.20 8.01 59.85 0.48 2.68 16 2 N -0.43 -10.53 3.02 -123.34 -0.37 -10.90 16 3 C -0.30 -7.94 9.53 -15.00 -0.14 -8.08 16 4 H 0.11 3.00 7.21 -52.49 -0.38 2.62 16 5 C 0.03 0.73 5.38 -17.45 -0.09 0.63 16 6 N -0.88 -21.90 9.67 55.50 0.54 -21.36 16 7 Si 0.93 19.80 29.56 -169.99 -5.02 14.78 16 8 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 9 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 11 C 0.47 11.20 6.21 -12.41 -0.08 11.13 16 12 O -0.58 -15.59 15.50 5.28 0.08 -15.51 16 13 C -0.12 -2.47 4.85 -104.82 -0.51 -2.98 16 14 C -0.04 -0.67 7.55 -38.86 -0.29 -0.96 16 15 C -0.17 -2.36 9.86 -39.46 -0.39 -2.75 16 16 C 0.18 2.73 7.27 -17.34 -0.13 2.60 16 17 Cl -0.04 -0.57 29.10 -51.86 -1.51 -2.08 16 18 N -0.48 -8.35 9.34 -6.26 -0.06 -8.41 16 19 C 0.21 3.94 6.48 -82.15 -0.53 3.40 16 20 C -0.11 -1.89 5.19 -91.77 -0.48 -2.37 16 21 C -0.16 -2.39 10.02 -26.73 -0.27 -2.65 16 22 C -0.15 -2.30 10.22 -26.73 -0.27 -2.57 16 23 H 0.03 0.55 4.61 -51.93 -0.24 0.31 16 24 H 0.08 1.93 6.74 -51.93 -0.35 1.58 16 25 H 0.06 1.40 7.44 -51.93 -0.39 1.01 16 26 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 27 H 0.15 2.32 7.43 -52.48 -0.39 1.93 16 28 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 29 H 0.13 2.60 6.82 -51.93 -0.35 2.25 16 30 H 0.10 1.51 7.61 -51.93 -0.40 1.12 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 296.74 15.07 4.47 4.47 Total: -1.00 -28.46 296.74 -7.90 -36.35 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.32 Total: 4.57 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.70 Total: -1.92 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.11 Total: -40.67 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.08 Total: -15.51 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.51 Total: -2.08 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.46 -7.90 -36.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197268908.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.885 kcal (2) G-P(sol) polarization free energy of solvation -28.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds