Wall clock time and date at job start Tue Mar 31 2020 00:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39857 * 125.46972 * 2 1 4 4 C 1.30232 * 110.09532 * 180.02562 * 3 2 1 5 5 C 1.45971 * 107.79308 * 359.97438 * 4 3 2 6 6 C 1.39967 * 133.87079 * 180.02562 * 5 4 3 7 7 C 1.36339 * 119.85589 * 179.97438 * 6 5 4 8 8 C 1.39467 * 120.57820 * 0.02562 * 7 6 5 9 9 O 1.35896 * 119.72678 * 179.97438 * 8 7 6 10 10 C 1.42901 * 117.00346 * 5.68218 * 9 8 7 11 11 H 1.09003 * 109.46760 * 21.35868 * 10 9 8 12 12 C 1.50699 * 109.47196 * 141.36006 * 10 9 8 13 13 H 1.08001 * 120.00044 * 95.02215 * 12 10 9 14 14 C 1.37872 * 119.99931 * 275.01830 * 12 10 9 15 15 N 1.31516 * 120.00151 * 7.52641 * 14 12 10 16 16 Si 1.86806 * 119.99993 * 187.53016 * 14 12 10 17 17 H 1.48502 * 109.46965 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.46807 * 299.99858 * 16 14 12 19 19 H 1.48501 * 109.46875 * 60.00045 * 16 14 12 20 20 C 1.53001 * 109.46948 * 261.36354 * 10 9 8 21 21 Cl 1.80291 * 109.47450 * 65.48991 * 20 10 9 22 22 C 1.38079 * 120.54243 * 0.27101 * 8 7 6 23 23 C 1.37068 * 125.45791 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47179 * 89.96659 * 1 2 3 25 25 H 1.08997 * 109.47647 * 209.97329 * 1 2 3 26 26 H 1.09004 * 109.46730 * 329.97667 * 1 2 3 27 27 H 1.07997 * 126.09671 * 180.02562 * 4 3 2 28 28 H 1.08008 * 120.07524 * 0.02562 * 6 5 4 29 29 H 1.07998 * 119.71192 * 179.97438 * 7 6 5 30 30 H 0.97001 * 119.99877 * 355.31192 * 15 14 12 31 31 H 1.09003 * 109.46812 * 185.49028 * 20 10 9 32 32 H 1.09002 * 109.47055 * 305.48522 * 20 10 9 33 33 H 1.07998 * 120.14674 * 179.72439 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2766 1.1390 0.0000 4 6 3.5323 0.7938 -0.0005 5 6 3.5939 -0.6647 -0.0003 6 6 4.6429 -1.5912 -0.0002 7 6 4.3689 -2.9268 0.0005 8 6 3.0501 -3.3804 0.0006 9 8 2.7967 -4.7156 0.0009 10 6 3.9205 -5.5892 0.1270 11 1 4.7536 -5.0471 0.5744 12 6 3.5523 -6.7578 1.0045 13 1 3.2116 -7.6810 0.5594 14 6 3.6505 -6.6484 2.3753 15 7 3.9215 -5.4844 2.9244 16 14 3.3987 -8.1534 3.4529 17 1 3.5566 -7.7727 4.8795 18 1 2.0343 -8.6967 3.2331 19 1 4.4056 -9.1871 3.1024 20 6 4.3281 -6.0989 -1.2568 21 17 4.9217 -4.7196 -2.2546 22 6 1.9997 -2.4841 -0.0056 23 6 2.2602 -1.1165 -0.0005 24 1 -0.3633 0.0006 -1.0277 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 4.3771 1.4665 -0.0003 28 1 5.6674 -1.2490 0.0001 29 1 5.1801 -3.6397 0.0002 30 1 4.1193 -4.7180 2.3637 31 1 5.1211 -6.8394 -1.1522 32 1 3.4666 -6.5555 -1.7441 33 1 0.9809 -2.8425 -0.0100 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234523227.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:54 Heat of formation + Delta-G solvation = 35.858665 kcal Electronic energy + Delta-G solvation = -19512.474722 eV Core-core repulsion = 16372.716915 eV Total energy + Delta-G solvation = -3139.757807 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.79924 -38.74407 -35.72911 -35.12467 -33.40848 -32.97669 -30.44143 -29.67617 -28.23639 -26.24961 -24.85990 -22.74262 -22.27151 -20.81000 -20.14786 -17.70849 -17.22632 -16.47536 -15.70550 -15.21798 -14.81744 -14.51820 -14.09947 -13.91156 -13.76343 -13.38730 -13.04385 -12.73990 -12.52160 -12.20608 -12.07809 -11.96991 -11.63537 -10.99696 -10.85883 -10.63512 -10.47263 -10.28196 -10.27178 -9.82201 -9.62831 -9.37419 -8.93443 -8.80663 -7.50077 -7.27343 -6.81001 -4.63652 1.51205 2.07745 2.68271 2.87553 2.91307 3.26212 3.28699 3.47529 4.13619 4.30462 4.36153 4.72891 5.04154 5.13387 5.19556 5.32134 5.47672 5.53412 5.62537 5.63882 5.71552 5.89869 5.91882 6.02435 6.15026 6.43771 6.49196 6.80444 6.86641 7.00225 7.20935 7.42914 7.52101 7.96770 7.97933 8.36446 8.51553 9.15941 10.58150 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.005932 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.397845 B = 4718.895950 C = 5561.702101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.419 5.419 3 N -0.276 5.276 4 C 0.080 3.920 5 C -0.231 4.231 6 C -0.011 4.011 7 C -0.217 4.217 8 C 0.212 3.788 9 O -0.310 6.310 10 C 0.174 3.826 11 H 0.058 0.942 12 C -0.601 4.601 13 H 0.066 0.934 14 C 0.035 3.965 15 N -0.872 5.872 16 Si 1.076 2.924 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.030 4.030 21 Cl -0.215 7.215 22 C -0.217 4.217 23 C 0.168 3.832 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.190 0.810 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.276 0.724 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 5.655 -5.435 7.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.208 5.208 3 N -0.088 5.088 4 C -0.118 4.118 5 C -0.239 4.239 6 C -0.032 4.032 7 C -0.237 4.237 8 C 0.161 3.839 9 O -0.222 6.222 10 C 0.121 3.879 11 H 0.075 0.925 12 C -0.637 4.637 13 H 0.084 0.916 14 C -0.175 4.175 15 N -0.505 5.505 16 Si 0.901 3.099 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.093 4.093 21 Cl -0.189 7.189 22 C -0.241 4.241 23 C 0.054 3.946 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.206 0.794 28 H 0.140 0.860 29 H 0.153 0.847 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.816 6.121 -3.968 7.517 hybrid contribution 0.665 -0.069 -1.733 1.857 sum -1.151 6.052 -5.700 8.393 Atomic orbital electron populations 1.21628 0.74844 1.03787 1.02415 1.47949 1.05372 1.01106 1.66412 1.76439 1.02664 1.09106 1.20604 1.24889 0.94443 0.93297 0.99127 1.19656 0.93083 0.92936 1.18207 1.19991 0.97210 0.91462 0.94543 1.21028 0.96602 0.96321 1.09758 1.18889 0.91888 0.85540 0.87609 1.86658 1.40184 1.11176 1.84185 1.20852 0.87141 0.89489 0.90377 0.92495 1.21855 1.51811 0.96850 0.93174 0.91614 1.26185 0.92495 1.02382 0.96451 1.70781 1.39052 1.00627 1.40000 0.83444 0.76953 0.73440 0.76025 1.20303 1.20899 1.20766 1.25242 1.01395 0.89013 0.93611 1.98679 1.90785 1.54038 1.75441 1.18904 0.98743 0.87863 1.18551 1.18293 0.90369 0.88602 0.97293 0.91850 0.89949 0.90028 0.79370 0.86022 0.84691 0.91188 0.88249 0.89361 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.44 11.40 59.85 0.68 2.12 16 2 N -0.42 -7.12 4.05 -65.48 -0.27 -7.38 16 3 N -0.28 -4.63 12.40 31.88 0.40 -4.23 16 4 C 0.08 1.23 12.28 -15.14 -0.19 1.04 16 5 C -0.23 -4.16 6.36 -105.18 -0.67 -4.83 16 6 C -0.01 -0.20 10.05 -39.62 -0.40 -0.60 16 7 C -0.22 -4.33 7.13 -39.81 -0.28 -4.62 16 8 C 0.21 4.60 6.23 -39.18 -0.24 4.36 16 9 O -0.31 -7.38 9.68 -19.41 -0.19 -7.57 16 10 C 0.17 4.01 1.66 -27.88 -0.05 3.97 16 11 H 0.06 1.37 4.33 -51.93 -0.22 1.14 16 12 C -0.60 -15.22 8.68 -34.44 -0.30 -15.52 16 13 H 0.07 1.62 7.82 -52.49 -0.41 1.21 16 14 C 0.04 0.91 5.45 -17.82 -0.10 0.82 16 15 N -0.87 -24.37 13.63 55.43 0.76 -23.61 16 16 Si 1.08 22.76 29.91 -169.99 -5.08 17.68 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 C -0.03 -0.57 6.31 37.16 0.23 -0.34 16 21 Cl -0.22 -3.90 25.71 -51.86 -1.33 -5.23 16 22 C -0.22 -4.41 9.94 -39.27 -0.39 -4.80 16 23 C 0.17 3.20 6.86 -84.18 -0.58 2.62 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.95 8.13 -51.93 -0.42 0.53 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.14 2.71 4.77 -52.49 -0.25 2.46 16 30 H 0.28 7.75 6.84 -40.82 -0.28 7.47 16 31 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 297.68 15.07 4.49 4.49 Total: -1.00 -29.97 297.68 -6.85 -36.82 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.34 Total: 4.81 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -2.28 Total: -15.77 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.89 Total: -35.22 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.19 Total: -7.57 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.08 Total: 17.68 kcal Atomic # 17 Polarization: -3.90 SS G_CDS: -1.33 Total: -5.23 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.97 -6.85 -36.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234523227.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.678 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds