Wall clock time and date at job start Tue Mar 31 2020 01:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46609 * 181.32371 * 3 2 1 5 5 N 1.46898 * 109.47326 * 173.97147 * 4 3 2 6 6 C 1.46901 * 111.00231 * 71.60181 * 5 4 3 7 7 C 1.50705 * 109.46833 * 283.77432 * 6 5 4 8 8 H 1.07996 * 120.00090 * 357.62737 * 7 6 5 9 9 C 1.37878 * 119.99903 * 177.63045 * 7 6 5 10 10 N 1.31524 * 119.99948 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00380 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47338 * 59.99844 * 11 9 7 13 13 H 1.48495 * 109.47569 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46809 * 300.00147 * 11 9 7 15 15 C 1.46902 * 111.00738 * 195.55792 * 5 4 3 16 16 C 1.50699 * 109.46770 * 66.04366 * 15 5 4 17 17 N 1.32107 * 120.00987 * 90.00809 * 16 15 5 18 18 C 1.32150 * 120.01993 * 180.02562 * 17 16 15 19 19 C 1.38347 * 120.03093 * 359.97168 * 18 17 16 20 20 N 1.32155 * 120.01775 * 0.02562 * 19 18 17 21 21 C 1.32246 * 119.98196 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 120.01414 * 179.97438 * 21 20 19 23 23 H 1.08991 * 109.47420 * 61.32246 * 3 2 1 24 24 H 1.09000 * 109.47201 * 301.32123 * 3 2 1 25 25 H 1.09002 * 109.47456 * 53.97603 * 4 3 2 26 26 H 1.08998 * 109.47381 * 293.97131 * 4 3 2 27 27 H 1.09002 * 109.46828 * 43.76994 * 6 5 4 28 28 H 1.08998 * 109.47951 * 163.77114 * 6 5 4 29 29 H 0.97000 * 119.99955 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.46911 * 306.04975 * 15 5 4 31 31 H 1.08997 * 109.47589 * 186.04441 * 15 5 4 32 32 H 1.07995 * 119.98747 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.99227 * 179.75090 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1172 1.4430 0.0333 5 7 4.5790 1.4431 0.1788 6 6 5.2312 0.9947 -1.0587 7 6 5.1067 -0.5025 -1.1782 8 1 4.6280 -1.0688 -0.3930 9 6 5.6038 -1.1491 -2.2898 10 7 6.1864 -0.4592 -3.2462 11 14 5.4501 -3.0048 -2.4377 12 1 4.0152 -3.3863 -2.4127 13 1 6.0594 -3.4518 -3.7160 14 1 6.1542 -3.6519 -1.3014 15 6 5.0681 2.7685 0.5812 16 6 4.5699 3.0883 1.9670 17 7 5.2877 2.7472 3.0223 18 6 4.8508 3.0271 4.2377 19 6 3.6416 3.6780 4.4059 20 7 2.9224 4.0198 3.3512 21 6 3.3586 3.7391 2.1347 22 17 2.4143 4.1872 0.7487 23 1 2.9716 -0.4923 -0.9015 24 1 2.9716 -0.5334 0.8779 25 1 2.6682 1.9675 0.8768 26 1 2.8444 1.9462 -0.8943 27 1 4.7510 1.4687 -1.9148 28 1 6.2854 1.2708 -1.0346 29 1 6.5365 -0.9142 -4.0281 30 1 4.7013 3.5191 -0.1189 31 1 6.1581 2.7701 0.5776 32 1 5.4378 2.7477 5.1000 33 1 3.2832 3.9028 5.3996 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236616760.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:45 Heat of formation + Delta-G solvation = 83.359170 kcal Electronic energy + Delta-G solvation = -19338.277026 eV Core-core repulsion = 16232.871747 eV Total energy + Delta-G solvation = -3105.405280 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.27411 -37.70823 -36.82815 -35.95203 -34.44048 -32.87389 -31.97430 -30.51824 -27.83847 -25.88643 -24.75850 -23.43100 -22.50446 -20.32933 -18.01389 -17.58114 -17.40409 -16.22654 -15.82134 -15.60328 -14.90509 -14.65562 -14.26139 -14.14166 -13.72825 -13.30179 -12.86520 -12.41660 -12.34468 -12.18096 -12.01803 -11.85646 -11.75136 -11.26370 -11.16403 -10.93374 -10.86620 -10.82811 -10.57485 -10.36001 -9.74725 -9.37315 -9.20865 -9.14727 -8.50134 -7.55068 -6.13110 -4.14376 0.49306 0.92074 1.60114 3.18378 3.25571 3.29178 3.34096 3.35809 3.43430 3.97242 4.12451 4.17558 4.32008 4.44803 4.89125 4.92170 5.06074 5.18526 5.23866 5.56132 5.62621 5.84281 5.93168 6.00799 6.09473 6.43375 6.70500 6.97947 7.00930 7.16468 7.56456 7.64520 7.87651 7.97376 8.03670 8.33277 8.90432 9.48742 10.96764 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.005738 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.170565 B = 4878.737298 C = 5459.227839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.220 3.780 3 C -0.039 4.039 4 C 0.066 3.934 5 N -0.523 5.523 6 C 0.191 3.809 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.098 3.902 16 C 0.129 3.871 17 N -0.404 5.404 18 C 0.055 3.945 19 C 0.055 3.945 20 N -0.434 5.434 21 C 0.119 3.881 22 Cl -0.009 7.009 23 H 0.148 0.852 24 H 0.108 0.892 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.004 0.996 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.177 0.823 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 8.546 11.896 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.097 4.097 3 C -0.079 4.079 4 C -0.063 4.063 5 N -0.248 5.248 6 C 0.067 3.933 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.143 4.143 10 N -0.531 5.531 11 Si 0.720 3.280 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.031 4.031 16 C -0.013 4.013 17 N -0.119 5.119 18 C -0.105 4.105 19 C -0.106 4.106 20 N -0.150 5.150 21 C -0.049 4.049 22 Cl 0.020 6.980 23 H 0.166 0.834 24 H 0.126 0.874 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.021 0.979 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.194 0.806 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.062 8.231 11.927 14.812 hybrid contribution 0.062 -0.382 -0.730 0.826 sum -3.000 7.849 11.198 14.000 Atomic orbital electron populations 1.81099 1.13410 1.09613 1.10733 1.29839 0.95789 0.92251 0.91843 1.19999 0.79180 1.00262 1.08491 1.22122 0.89713 0.94509 1.00005 1.62123 1.03597 1.20838 1.38213 1.19896 0.94309 0.96206 0.82936 1.21221 1.38304 0.91522 1.04315 0.90845 1.24977 0.95160 0.98349 0.95770 1.69935 1.38433 1.35835 1.08903 0.86646 0.78546 0.85382 0.77447 1.20060 1.21368 1.20014 1.21026 1.01870 0.92824 0.87379 1.22230 0.89488 0.92047 0.97545 1.68522 1.31724 1.13414 0.98221 1.23968 0.95280 0.95033 0.96215 1.23721 0.92545 0.96445 0.97878 1.67774 1.32980 1.16324 0.97950 1.22733 0.92468 0.99564 0.90154 1.98428 1.72230 1.90865 1.36492 0.83447 0.87412 0.92336 0.94130 0.97855 0.94846 0.92690 0.92600 0.88018 0.80601 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.07 18.54 42.15 0.78 -8.29 16 2 C 0.22 3.88 15.43 -20.76 -0.32 3.56 16 3 C -0.04 -0.67 4.40 -29.52 -0.13 -0.80 16 4 C 0.07 1.14 3.57 -3.83 -0.01 1.12 16 5 N -0.52 -9.66 4.47 -237.51 -1.06 -10.72 16 6 C 0.19 4.26 4.76 -4.97 -0.02 4.23 16 7 C -0.52 -12.41 6.93 -34.44 -0.24 -12.65 16 8 H 0.07 1.69 5.89 -52.49 -0.31 1.38 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.89 -24.24 13.29 55.43 0.74 -23.51 16 11 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.10 1.57 5.06 -4.98 -0.03 1.55 16 16 C 0.13 1.92 5.84 -82.37 -0.48 1.44 16 17 N -0.40 -5.68 10.42 -9.26 -0.10 -5.78 16 18 C 0.06 0.57 11.22 -17.37 -0.19 0.37 16 19 C 0.05 0.54 11.22 -17.37 -0.19 0.35 16 20 N -0.43 -5.81 10.49 -10.17 -0.11 -5.91 16 21 C 0.12 1.71 6.18 -17.27 -0.11 1.60 16 22 Cl -0.01 -0.12 24.49 -51.86 -1.27 -1.39 16 23 H 0.15 2.80 5.48 -51.93 -0.28 2.51 16 24 H 0.11 1.74 7.93 -51.93 -0.41 1.33 16 25 H 0.06 0.96 4.17 -51.93 -0.22 0.74 16 26 H 0.04 0.71 7.70 -51.93 -0.40 0.31 16 27 H 0.00 0.09 7.78 -51.93 -0.40 -0.32 16 28 H 0.03 0.80 7.73 -51.93 -0.40 0.40 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.06 0.85 6.89 -51.93 -0.36 0.49 16 31 H 0.10 1.63 7.82 -51.93 -0.41 1.22 16 32 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 298.44 15.07 4.50 4.50 Total: -1.00 -29.03 298.44 -6.54 -35.57 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -3.17 Total: -1.51 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.83 Total: 2.21 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.25 Total: -54.21 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.27 Total: -1.39 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.03 -6.54 -35.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236616760.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.927 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds