Wall clock time and date at job start Tue Mar 31 2020 01:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46609 * 181.32371 * 3 2 1 5 5 N 1.46898 * 109.47326 * 173.97147 * 4 3 2 6 6 C 1.46901 * 111.00231 * 71.60181 * 5 4 3 7 7 C 1.50705 * 109.46833 * 283.77432 * 6 5 4 8 8 H 1.07996 * 120.00090 * 357.62737 * 7 6 5 9 9 C 1.37878 * 119.99903 * 177.63045 * 7 6 5 10 10 N 1.31524 * 119.99948 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00380 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47338 * 59.99844 * 11 9 7 13 13 H 1.48495 * 109.47569 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46809 * 300.00147 * 11 9 7 15 15 C 1.46902 * 111.00738 * 195.55792 * 5 4 3 16 16 C 1.50699 * 109.46770 * 66.04366 * 15 5 4 17 17 N 1.32107 * 120.00987 * 90.00809 * 16 15 5 18 18 C 1.32150 * 120.01993 * 180.02562 * 17 16 15 19 19 C 1.38347 * 120.03093 * 359.97168 * 18 17 16 20 20 N 1.32155 * 120.01775 * 0.02562 * 19 18 17 21 21 C 1.32246 * 119.98196 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 120.01414 * 179.97438 * 21 20 19 23 23 H 1.08991 * 109.47420 * 61.32246 * 3 2 1 24 24 H 1.09000 * 109.47201 * 301.32123 * 3 2 1 25 25 H 1.09002 * 109.47456 * 53.97603 * 4 3 2 26 26 H 1.08998 * 109.47381 * 293.97131 * 4 3 2 27 27 H 1.09002 * 109.46828 * 43.76994 * 6 5 4 28 28 H 1.08998 * 109.47951 * 163.77114 * 6 5 4 29 29 H 0.97000 * 119.99955 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.46911 * 306.04975 * 15 5 4 31 31 H 1.08997 * 109.47589 * 186.04441 * 15 5 4 32 32 H 1.07995 * 119.98747 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.99227 * 179.75090 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1172 1.4430 0.0333 5 7 4.5790 1.4431 0.1788 6 6 5.2312 0.9947 -1.0587 7 6 5.1067 -0.5025 -1.1782 8 1 4.6280 -1.0688 -0.3930 9 6 5.6038 -1.1491 -2.2898 10 7 6.1864 -0.4592 -3.2462 11 14 5.4501 -3.0048 -2.4377 12 1 4.0152 -3.3863 -2.4127 13 1 6.0594 -3.4518 -3.7160 14 1 6.1542 -3.6519 -1.3014 15 6 5.0681 2.7685 0.5812 16 6 4.5699 3.0883 1.9670 17 7 5.2877 2.7472 3.0223 18 6 4.8508 3.0271 4.2377 19 6 3.6416 3.6780 4.4059 20 7 2.9224 4.0198 3.3512 21 6 3.3586 3.7391 2.1347 22 17 2.4143 4.1872 0.7487 23 1 2.9716 -0.4923 -0.9015 24 1 2.9716 -0.5334 0.8779 25 1 2.6682 1.9675 0.8768 26 1 2.8444 1.9462 -0.8943 27 1 4.7510 1.4687 -1.9148 28 1 6.2854 1.2708 -1.0346 29 1 6.5365 -0.9142 -4.0281 30 1 4.7013 3.5191 -0.1189 31 1 6.1581 2.7701 0.5776 32 1 5.4378 2.7477 5.1000 33 1 3.2832 3.9028 5.3996 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236616760.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:45 Heat of formation + Delta-G solvation = 63.495564 kcal Electronic energy + Delta-G solvation = -19339.138377 eV Core-core repulsion = 16232.871747 eV Total energy + Delta-G solvation = -3106.266630 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.24368 -39.13202 -37.91765 -37.41817 -35.50219 -34.61144 -33.22532 -31.87420 -29.43244 -27.25877 -25.78359 -24.85413 -23.88984 -21.81649 -19.21752 -18.96197 -18.34557 -17.73028 -17.06929 -16.89351 -16.42633 -16.08922 -15.71275 -15.25310 -15.06073 -14.57428 -14.32917 -13.90636 -13.70919 -13.60818 -13.42520 -13.27632 -12.86429 -12.74583 -12.57465 -12.44456 -12.30590 -12.18814 -12.08728 -11.93180 -11.33439 -11.13767 -10.44640 -10.20399 -10.15307 -9.09226 -8.07829 -6.13458 -0.44430 -0.02677 0.58425 1.52756 1.53883 1.59794 1.73828 1.81068 2.43473 2.53611 2.95000 3.00753 3.21038 3.26538 3.28441 3.61970 3.98808 4.08798 4.17260 4.28815 4.37262 4.53227 4.59776 4.70662 5.01016 5.18865 5.21756 5.31980 5.34810 5.78682 6.07187 6.13697 6.27893 6.53575 6.59911 6.64169 6.99550 7.53375 9.02258 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.005738 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.170565 B = 4878.737298 C = 5459.227839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.238 3.762 3 C -0.030 4.030 4 C 0.071 3.929 5 N -0.523 5.523 6 C 0.205 3.795 7 C -0.512 4.512 8 H 0.086 0.914 9 C 0.010 3.990 10 N -0.932 5.932 11 Si 0.950 3.050 12 H -0.266 1.266 13 H -0.295 1.295 14 H -0.269 1.269 15 C 0.100 3.900 16 C 0.112 3.888 17 N -0.431 5.431 18 C 0.067 3.933 19 C 0.072 3.928 20 N -0.454 5.454 21 C 0.105 3.895 22 Cl -0.020 7.020 23 H 0.132 0.868 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.033 0.967 27 H -0.020 1.020 28 H 0.011 0.989 29 H 0.261 0.739 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.221 0.779 33 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 8.181 14.694 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.078 4.078 3 C -0.070 4.070 4 C -0.058 4.058 5 N -0.247 5.247 6 C 0.079 3.921 7 C -0.550 4.550 8 H 0.104 0.896 9 C -0.189 4.189 10 N -0.573 5.573 11 Si 0.776 3.224 12 H -0.191 1.191 13 H -0.221 1.221 14 H -0.194 1.194 15 C -0.029 4.029 16 C -0.029 4.029 17 N -0.146 5.146 18 C -0.095 4.095 19 C -0.090 4.090 20 N -0.171 5.171 21 C -0.061 4.061 22 Cl 0.009 6.991 23 H 0.149 0.851 24 H 0.141 0.859 25 H 0.090 0.910 26 H 0.051 0.949 27 H -0.002 1.002 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.238 0.762 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.513 7.873 14.710 17.051 hybrid contribution 0.219 -0.180 -1.387 1.415 sum -3.294 7.693 13.324 15.734 Atomic orbital electron populations 1.81120 1.14079 1.10469 1.11583 1.29771 0.95566 0.91433 0.91027 1.19882 0.78740 1.00143 1.08253 1.22096 0.88904 0.94646 1.00203 1.62001 1.04132 1.22830 1.35757 1.19559 0.93089 0.95543 0.83878 1.21604 1.36889 0.92442 1.04080 0.89615 1.25718 0.95243 1.02185 0.95752 1.70066 1.40220 1.37364 1.09606 0.85720 0.78817 0.80824 0.77037 1.19072 1.22102 1.19389 1.20946 1.01465 0.91505 0.88967 1.21796 0.90193 0.93876 0.96985 1.68486 1.32378 1.14327 0.99393 1.24744 0.95539 0.93235 0.95948 1.24573 0.91703 0.93930 0.98761 1.67836 1.33935 1.17126 0.98172 1.22617 0.92383 1.00496 0.90555 1.98417 1.72427 1.90989 1.37307 0.85072 0.85890 0.91039 0.94889 1.00205 0.97073 0.93050 0.92316 0.88717 0.76224 0.76063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.53 18.54 20.01 0.37 -18.16 16 2 C 0.24 8.16 15.43 89.44 1.38 9.54 16 3 C -0.03 -1.00 4.40 28.79 0.13 -0.87 16 4 C 0.07 2.42 3.57 86.30 0.31 2.73 16 5 N -0.52 -19.40 4.47 -905.36 -4.04 -23.45 16 6 C 0.20 9.38 4.76 85.56 0.41 9.79 16 7 C -0.51 -24.71 6.93 25.60 0.18 -24.53 16 8 H 0.09 3.85 5.89 -2.91 -0.02 3.83 16 9 C 0.01 0.49 5.46 84.65 0.46 0.95 16 10 N -0.93 -51.82 13.29 21.45 0.28 -51.53 16 11 Si 0.95 40.63 29.54 68.60 2.03 42.66 16 12 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 13 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 15 C 0.10 3.25 5.06 85.56 0.43 3.68 16 16 C 0.11 3.22 5.84 42.58 0.25 3.47 16 17 N -0.43 -11.21 10.42 -183.21 -1.91 -13.12 16 18 C 0.07 1.10 11.22 84.67 0.95 2.05 16 19 C 0.07 1.13 11.22 84.67 0.95 2.08 16 20 N -0.45 -11.00 10.49 -186.09 -1.95 -12.96 16 21 C 0.11 2.90 6.18 84.70 0.52 3.42 16 22 Cl -0.02 -0.55 24.49 -2.72 -0.07 -0.62 16 23 H 0.13 4.90 5.48 -2.39 -0.01 4.89 16 24 H 0.12 3.73 7.93 -2.39 -0.02 3.71 16 25 H 0.07 2.29 4.17 -2.39 -0.01 2.28 16 26 H 0.03 1.17 7.70 -2.39 -0.02 1.16 16 27 H -0.02 -0.99 7.78 -2.39 -0.02 -1.01 16 28 H 0.01 0.56 7.73 -2.39 -0.02 0.54 16 29 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.06 1.84 6.89 -2.39 -0.02 1.82 16 31 H 0.09 3.14 7.82 -2.39 -0.02 3.12 16 32 H 0.22 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.22 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -63.21 298.44 1.83 -61.38 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.15 Total: 3.49 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.97 Total: 12.30 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -7.25 Total: -119.21 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.07 Total: -0.62 kcal Total: -63.21 1.83 -61.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236616760.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.876 kcal (2) G-P(sol) polarization free energy of solvation -63.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds