Wall clock time and date at job start Tue Mar 31 2020 01:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86799 * 119.99884 * 2 1 4 4 H 1.48504 * 109.47120 * 270.00600 * 3 2 1 5 5 H 1.48503 * 109.47050 * 30.00102 * 3 2 1 6 6 H 1.48492 * 109.47372 * 150.00544 * 3 2 1 7 7 C 1.38621 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99375 * 179.97438 * 7 2 1 9 9 O 1.34801 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.35683 * 116.99887 * 185.06455 * 9 7 2 11 11 C 1.38720 * 120.13669 * 354.40323 * 10 9 7 12 12 C 1.38143 * 120.05305 * 180.02562 * 11 10 9 13 13 C 1.38443 * 120.33590 * 359.95830 * 12 11 10 14 14 C 1.38012 * 120.27291 * 0.02562 * 13 12 11 15 15 C 1.39334 * 119.94008 * 359.97438 * 14 13 12 16 16 C 1.48189 * 120.16546 * 179.73137 * 15 14 13 17 17 C 1.35353 * 127.05571 * 65.02082 * 16 15 14 18 18 O 1.34347 * 109.90717 * 179.97438 * 17 16 15 19 19 C 1.34870 * 111.15943 * 359.97438 * 18 17 16 20 20 C 1.38979 * 133.19033 * 180.02562 * 19 18 17 21 21 C 1.37819 * 119.96514 * 180.02562 * 20 19 18 22 22 C 1.38728 * 120.67087 * 0.02562 * 21 20 19 23 23 C 1.37793 * 120.23130 * 359.97438 * 22 21 20 24 24 C 1.39227 * 119.62273 * 359.72162 * 23 22 21 25 25 H 0.96995 * 120.00105 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.97182 * 0.02562 * 11 10 9 27 27 H 1.08000 * 119.83220 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.86546 * 180.02562 * 13 12 11 29 29 H 1.08007 * 120.02795 * 180.02562 * 14 13 12 30 30 H 1.08000 * 125.04616 * 0.02562 * 17 16 15 31 31 H 1.07993 * 120.01371 * 359.97438 * 20 19 18 32 32 H 1.07996 * 119.66523 * 180.02562 * 21 20 19 33 33 H 1.07997 * 119.88593 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.18703 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4402 0.6999 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2004 -0.0010 9 8 1.3349 -2.3679 -0.0005 10 6 2.0699 -3.5035 0.1056 11 6 3.4555 -3.4402 0.0912 12 6 4.2021 -4.5975 0.1989 13 6 3.5747 -5.8254 0.3225 14 6 2.1970 -5.9042 0.3388 15 6 1.4327 -4.7441 0.2309 16 6 -0.0470 -4.8236 0.2418 17 6 -0.8345 -5.2286 1.2654 18 8 -2.1263 -5.1644 0.9019 19 6 -2.2540 -4.7184 -0.3645 20 6 -3.3517 -4.4812 -1.1833 21 6 -3.1652 -4.0140 -2.4664 22 6 -1.8885 -3.7766 -2.9545 23 6 -0.7876 -4.0057 -2.1582 24 6 -0.9636 -4.4716 -0.8580 25 1 -0.4850 0.8400 0.0004 26 1 3.9510 -2.4854 -0.0043 27 1 5.2807 -4.5441 0.1868 28 1 4.1659 -6.7253 0.4066 29 1 1.7116 -6.8642 0.4358 30 1 -0.4775 -5.5543 2.2313 31 1 -4.3501 -4.6636 -0.8145 32 1 -4.0216 -3.8310 -3.0984 33 1 -1.7570 -3.4109 -3.9621 34 1 0.2060 -3.8202 -2.5387 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239065759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:41 Heat of formation + Delta-G solvation = 28.904981 kcal Electronic energy + Delta-G solvation = -20911.026636 eV Core-core repulsion = 17741.107393 eV Total energy + Delta-G solvation = -3169.919243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.81270 -38.97415 -37.28152 -36.38868 -33.04302 -32.27023 -30.18559 -29.64502 -28.93318 -28.02891 -25.36360 -22.98509 -22.40317 -21.82179 -21.26270 -19.62208 -17.97568 -17.28674 -16.72778 -16.24951 -15.54551 -15.28462 -14.75667 -14.49685 -14.28447 -13.76226 -13.57567 -13.52655 -13.26905 -12.70569 -12.43382 -12.27239 -11.75413 -11.70842 -11.56491 -11.28205 -10.93217 -10.83876 -10.78130 -10.47878 -10.43865 -9.49695 -9.36378 -8.86894 -8.20248 -8.09659 -7.59919 -7.16169 -6.45985 -4.05474 1.43050 1.85487 2.01970 2.33902 2.95478 3.10452 3.11691 3.16185 3.30965 3.93710 4.24388 4.49150 5.02635 5.05955 5.10140 5.22512 5.37742 5.49014 5.62244 5.71744 5.77632 5.83696 5.92154 6.01658 6.07976 6.26711 6.34898 6.64986 6.69960 6.74216 6.78379 6.89522 6.98773 7.05248 7.14629 7.21047 7.32487 7.38497 7.69342 7.76341 7.96335 8.97924 9.67977 10.70234 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.007897 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.980826 B = 3544.964868 C = 5075.715629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.043 3.957 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.397 4.397 8 H 0.091 0.909 9 O -0.160 6.160 10 C 0.166 3.834 11 C -0.236 4.236 12 C -0.069 4.069 13 C -0.217 4.217 14 C -0.059 4.059 15 C -0.111 4.111 16 C -0.089 4.089 17 C -0.009 4.009 18 O -0.198 6.198 19 C 0.049 3.951 20 C -0.117 4.117 21 C -0.099 4.099 22 C -0.144 4.144 23 C -0.044 4.044 24 C -0.099 4.099 25 H 0.270 0.730 26 H 0.129 0.871 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.204 0.796 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 -8.302 -1.851 8.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.473 4.473 8 H 0.109 0.891 9 O -0.062 6.062 10 C 0.111 3.889 11 C -0.255 4.255 12 C -0.087 4.087 13 C -0.236 4.236 14 C -0.077 4.077 15 C -0.112 4.112 16 C -0.090 4.090 17 C -0.073 4.073 18 O -0.100 6.100 19 C 0.002 3.998 20 C -0.135 4.135 21 C -0.117 4.117 22 C -0.162 4.162 23 C -0.062 4.062 24 C -0.100 4.100 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.221 0.779 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.710 -8.127 -1.709 8.479 hybrid contribution 0.813 1.058 0.056 1.335 sum -0.897 -7.069 -1.653 7.315 Atomic orbital electron populations 1.70075 1.05843 1.27610 1.45017 1.25266 0.95789 0.98718 0.96460 0.85765 0.78991 0.80278 0.78732 1.19867 1.20247 1.19191 1.21333 0.91789 0.80926 1.53244 0.89126 1.84018 1.33931 1.11119 1.77086 1.19359 0.89954 0.87494 0.92083 1.21117 0.93493 0.99144 1.11734 1.20822 0.98517 0.92368 0.97003 1.20499 0.94058 0.97009 1.12006 1.20704 0.93400 0.95799 0.97831 1.17095 0.89002 0.91177 1.13967 1.19508 0.92669 1.03923 0.92887 1.23902 0.79352 1.04637 0.99448 1.83886 1.27913 1.70917 1.27320 1.19549 0.95561 1.00885 0.83758 1.19750 0.95707 1.04925 0.93118 1.20756 0.97307 0.99227 0.94370 1.20916 0.92198 1.02886 1.00201 1.20490 0.99238 0.94915 0.91559 1.19753 0.92067 1.02932 0.95267 0.92033 0.85382 0.87446 0.87442 0.86937 0.77930 0.85776 0.85477 0.85905 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.86 13.67 55.48 0.76 -24.10 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 3 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.40 -10.93 9.48 30.87 0.29 -10.63 16 8 H 0.09 2.31 5.21 -52.48 -0.27 2.04 16 9 O -0.16 -4.46 9.21 0.34 0.00 -4.46 16 10 C 0.17 3.98 6.65 -38.73 -0.26 3.72 16 11 C -0.24 -5.05 9.16 -39.44 -0.36 -5.41 16 12 C -0.07 -1.24 10.03 -39.54 -0.40 -1.64 16 13 C -0.22 -3.68 10.03 -39.59 -0.40 -4.08 16 14 C -0.06 -1.06 9.78 -39.26 -0.38 -1.45 16 15 C -0.11 -2.36 5.81 -104.73 -0.61 -2.97 16 16 C -0.09 -1.86 5.28 -103.09 -0.54 -2.41 16 17 C -0.01 -0.17 11.96 29.70 0.36 0.19 16 18 O -0.20 -3.80 10.56 4.01 0.04 -3.76 16 19 C 0.05 0.98 7.40 -38.52 -0.28 0.69 16 20 C -0.12 -1.95 10.06 -39.46 -0.40 -2.34 16 21 C -0.10 -1.53 10.01 -39.55 -0.40 -1.92 16 22 C -0.14 -2.46 10.04 -39.56 -0.40 -2.85 16 23 C -0.04 -0.89 10.09 -39.38 -0.40 -1.29 16 24 C -0.10 -2.12 6.39 -104.99 -0.67 -2.79 16 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.20 2.90 8.06 -52.49 -0.42 2.48 16 31 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 33 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 305.59 15.07 4.61 4.61 Total: -1.00 -31.67 305.59 -7.64 -39.31 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.09 Total: 7.11 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: -4.94 Total: -34.11 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.76 Total: -24.10 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.05 Total: -8.21 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.67 -7.64 -39.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239065759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.213 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds