Wall clock time and date at job start Tue Mar 31 2020 01:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47023 * 269.99970 * 3 2 1 5 5 H 1.48501 * 109.47298 * 29.99632 * 3 2 1 6 6 H 1.48497 * 109.47338 * 149.99885 * 3 2 1 7 7 C 1.38633 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99932 * 0.02562 * 7 2 1 9 9 O 1.34814 * 120.00121 * 179.97438 * 7 2 1 10 10 C 1.35653 * 116.99683 * 185.08767 * 9 7 2 11 11 C 1.38740 * 120.14317 * 354.40954 * 10 9 7 12 12 C 1.38122 * 120.05572 * 180.02562 * 11 10 9 13 13 C 1.38469 * 120.35062 * 359.94872 * 12 11 10 14 14 C 1.37975 * 120.28028 * 0.03005 * 13 12 11 15 15 C 1.39404 * 119.93824 * 359.97438 * 14 13 12 16 16 C 1.48059 * 120.17078 * 179.72915 * 15 14 13 17 17 C 1.39086 * 120.33298 * 64.99696 * 16 15 14 18 18 C 1.38393 * 120.11907 * 180.02562 * 17 16 15 19 19 C 1.38006 * 120.84068 * 359.97438 * 18 17 16 20 20 C 1.38941 * 120.23924 * 0.02562 * 19 18 17 21 21 O 1.34860 * 133.34367 * 179.97438 * 20 19 18 22 22 C 1.34432 * 110.86727 * 180.02562 * 21 20 19 23 23 C 1.34128 * 110.09401 * 359.97438 * 22 21 20 24 24 C 1.40380 * 119.39791 * 359.70254 * 20 19 18 25 25 H 0.97005 * 119.99942 * 359.97438 * 1 2 3 26 26 H 1.07992 * 119.97186 * 359.97438 * 11 10 9 27 27 H 1.08000 * 119.82315 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.85956 * 180.02562 * 13 12 11 29 29 H 1.08002 * 120.03356 * 180.02562 * 14 13 12 30 30 H 1.08007 * 119.94170 * 0.02562 * 17 16 15 31 31 H 1.08001 * 119.58084 * 180.02562 * 18 17 16 32 32 H 1.08004 * 119.87815 * 179.97438 * 19 18 17 33 33 H 1.08000 * 124.95744 * 180.02562 * 22 21 20 34 34 H 1.08001 * 126.90397 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6528 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3570 -1.2006 0.0000 10 6 3.9727 -2.4046 -0.1066 11 6 3.2250 -3.5732 -0.0922 12 6 3.8539 -4.7982 -0.2004 13 6 5.2311 -4.8691 -0.3247 14 6 5.9885 -3.7159 -0.3410 15 6 5.3661 -2.4732 -0.2326 16 6 6.1743 -1.2327 -0.2435 17 6 6.8905 -0.8710 -1.3796 18 6 7.6449 0.2893 -1.3848 19 6 7.6995 1.1026 -0.2712 20 6 6.9939 0.7651 0.8771 21 8 6.8594 1.3480 2.0858 22 6 6.0531 0.6227 2.8801 23 6 5.6227 -0.4674 2.2278 24 6 6.2208 -0.4066 0.8914 25 1 -0.4850 0.8401 0.0004 26 1 2.1505 -3.5250 0.0044 27 1 3.2682 -5.7055 -0.1884 28 1 5.7146 -5.8311 -0.4091 29 1 7.0624 -3.7758 -0.4385 30 1 6.8578 -1.4966 -2.2594 31 1 8.1973 0.5621 -2.2718 32 1 8.2936 2.0043 -0.2922 33 1 5.7895 0.8805 3.8953 34 1 4.9641 -1.2336 2.6093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:00 Heat of formation + Delta-G solvation = 14.663788 kcal Electronic energy + Delta-G solvation = -21203.994921 eV Core-core repulsion = 18033.458133 eV Total energy + Delta-G solvation = -3170.536787 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.30978 -40.95979 -38.85728 -37.96854 -34.51705 -34.03034 -32.68622 -30.85387 -30.59578 -29.35811 -27.23087 -24.73814 -23.34930 -23.32200 -22.65092 -21.53844 -19.79755 -19.15534 -18.15125 -18.00306 -17.04589 -16.78112 -16.60811 -16.22395 -15.77621 -15.62104 -15.39219 -14.82029 -14.57147 -14.30079 -14.09159 -14.02360 -13.60665 -13.25070 -13.03590 -12.82580 -12.72911 -12.55542 -12.35836 -12.20430 -11.83579 -11.26234 -11.06271 -10.94282 -9.83245 -9.52628 -9.19136 -8.82790 -8.54371 -6.23101 -0.12115 0.38541 0.56375 0.69941 1.22679 1.25513 1.45632 1.48477 1.90382 2.21892 2.69569 2.78743 3.02432 3.15109 3.56366 3.75088 4.02457 4.15017 4.17912 4.20604 4.26382 4.48070 4.52879 4.59991 4.65388 4.75639 4.91154 4.94375 5.12078 5.29546 5.35470 5.38687 5.48038 5.54184 5.60594 5.71425 5.73517 5.79694 5.89094 6.21845 6.22688 6.82276 7.60595 8.57422 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.011697 B = 0.010021 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.134893 B = 2793.462092 C = 4269.445718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.391 4.391 8 H 0.084 0.916 9 O -0.227 6.227 10 C 0.138 3.862 11 C -0.243 4.243 12 C -0.071 4.071 13 C -0.181 4.181 14 C -0.060 4.060 15 C -0.133 4.133 16 C 0.003 3.997 17 C -0.136 4.136 18 C -0.087 4.087 19 C -0.119 4.119 20 C 0.021 3.979 21 O -0.205 6.205 22 C 0.004 3.996 23 C -0.220 4.220 24 C -0.136 4.136 25 H 0.283 0.717 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.176 0.824 32 H 0.158 0.842 33 H 0.248 0.752 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.463 -2.105 0.455 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.177 4.177 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.101 0.899 9 O -0.133 6.133 10 C 0.088 3.912 11 C -0.262 4.262 12 C -0.089 4.089 13 C -0.199 4.199 14 C -0.077 4.077 15 C -0.134 4.134 16 C 0.003 3.997 17 C -0.154 4.154 18 C -0.104 4.104 19 C -0.137 4.137 20 C -0.026 4.026 21 O -0.107 6.107 22 C -0.059 4.059 23 C -0.239 4.239 24 C -0.137 4.137 25 H 0.093 0.907 26 H 0.128 0.872 27 H 0.160 0.840 28 H 0.173 0.827 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.193 0.807 32 H 0.176 0.824 33 H 0.264 0.736 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 16.486 -1.510 0.548 16.564 hybrid contribution -1.064 0.337 0.251 1.144 sum 15.421 -1.173 0.799 15.487 Atomic orbital electron populations 1.69715 1.06579 1.29306 1.50485 1.25015 0.95590 1.01253 0.95849 0.85441 0.79076 0.78731 0.78998 1.19810 1.19279 1.19023 1.20709 0.78358 0.95913 1.51802 0.89875 1.83588 1.20715 1.26909 1.82122 1.19593 0.91959 0.85341 0.94267 1.21293 1.00277 0.93227 1.11426 1.21244 0.95585 0.96259 0.95833 1.21138 0.93165 0.98989 1.06604 1.21174 1.00310 0.89764 0.96488 1.18150 0.88885 0.94115 1.12236 1.18287 0.95688 0.93233 0.92509 1.21450 0.98180 0.98753 0.97032 1.21247 0.98202 0.92891 0.98075 1.20335 1.01633 1.02787 0.88989 1.20064 1.01535 0.93526 0.87445 1.83950 1.58185 1.47228 1.21318 1.24598 0.93102 0.90649 0.97598 1.22567 1.05377 1.02200 0.93787 1.20188 1.00788 0.97045 0.95644 0.90686 0.87185 0.84024 0.82700 0.83388 0.83637 0.80653 0.82450 0.73630 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.42 13.96 21.61 0.30 -55.12 16 2 C 0.02 1.28 5.49 84.83 0.47 1.74 16 3 Si 0.95 47.64 28.62 68.60 1.96 49.60 16 4 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.27 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.39 -23.10 9.94 67.91 0.68 -22.42 16 8 H 0.08 5.11 5.44 -2.91 -0.02 5.10 16 9 O -0.23 -12.36 7.79 -21.50 -0.17 -12.53 16 10 C 0.14 6.52 6.62 22.84 0.15 6.67 16 11 C -0.24 -10.61 9.16 22.36 0.20 -10.41 16 12 C -0.07 -2.38 10.03 22.30 0.22 -2.16 16 13 C -0.18 -5.19 10.03 22.26 0.22 -4.97 16 14 C -0.06 -1.86 9.74 22.49 0.22 -1.65 16 15 C -0.13 -5.26 5.26 -19.94 -0.10 -5.36 16 16 C 0.00 0.11 4.96 -19.93 -0.10 0.02 16 17 C -0.14 -4.21 9.73 22.51 0.22 -3.99 16 18 C -0.09 -2.21 9.99 22.25 0.22 -1.98 16 19 C -0.12 -3.37 10.05 22.38 0.23 -3.14 16 20 C 0.02 0.75 7.41 22.96 0.17 0.92 16 21 O -0.20 -6.97 10.58 -9.29 -0.10 -7.07 16 22 C 0.00 0.14 11.97 66.88 0.80 0.94 16 23 C -0.22 -8.44 11.03 23.50 0.26 -8.18 16 24 C -0.14 -5.41 5.87 -20.05 -0.12 -5.53 16 25 H 0.28 15.77 8.31 -92.70 -0.77 15.00 16 26 H 0.11 5.27 5.64 -2.91 -0.02 5.25 16 27 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 28 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 29 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 31 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.25 5.04 8.06 -2.91 -0.02 5.02 16 34 H 0.14 5.57 8.06 -2.91 -0.02 5.55 16 Total: -1.00 -72.54 303.42 6.87 -65.67 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 1.13 Total: 18.95 kcal Atomic # 6 Polarization: -63.25 SS G_CDS: 3.74 Total: -59.51 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.30 Total: -55.12 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.27 Total: -19.60 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.96 Total: 49.60 kcal Total: -72.54 6.87 -65.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.334 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds